Wall clock time and date at job start Tue Mar 31 2020 06:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33648 * 126.28345 * 2 1 4 4 C 1.30629 * 109.01015 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.41754 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47555 * 239.99800 * 5 4 3 7 7 C 1.53004 * 109.47255 * 119.99814 * 5 4 3 8 8 O 1.33651 * 109.17264 * 0.24309 * 4 3 2 9 9 C 1.35362 * 107.67924 * 359.61057 * 8 4 3 10 10 C 1.46545 * 126.65267 * 180.11264 * 9 8 4 11 11 O 1.21609 * 120.00316 * 180.32735 * 10 9 8 12 12 O 1.34884 * 119.99913 * 0.31995 * 10 9 8 13 13 C 1.45204 * 116.99955 * 177.71727 * 12 10 9 14 14 C 1.50704 * 112.84925 * 65.17611 * 13 12 10 15 15 H 1.08000 * 119.99863 * 242.51200 * 14 13 12 16 16 C 1.37874 * 119.99818 * 62.51015 * 14 13 12 17 17 N 1.31518 * 120.00583 * 353.77304 * 16 14 13 18 18 Si 1.86801 * 119.99770 * 173.77241 * 16 14 13 19 19 H 1.48506 * 109.46879 * 60.00043 * 18 16 14 20 20 H 1.48504 * 109.47244 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47253 * 299.99899 * 18 16 14 22 22 C 1.53772 * 113.61318 * 293.97882 * 13 12 10 23 23 C 1.53954 * 87.02184 * 220.04960 * 22 13 12 24 24 C 1.53776 * 113.61289 * 196.37089 * 13 12 10 25 25 H 1.09006 * 109.47535 * 89.96989 * 1 2 3 26 26 H 1.09000 * 109.47561 * 209.97632 * 1 2 3 27 27 H 1.09008 * 109.46638 * 329.97579 * 1 2 3 28 28 H 1.09003 * 109.46879 * 0.02562 * 5 4 3 29 29 H 1.09000 * 109.46981 * 59.99834 * 6 5 4 30 30 H 1.08994 * 109.47171 * 299.99951 * 6 5 4 31 31 H 1.08994 * 109.47398 * 179.97438 * 6 5 4 32 32 H 1.08994 * 109.47083 * 60.00287 * 7 5 4 33 33 H 1.09003 * 109.46763 * 180.02562 * 7 5 4 34 34 H 1.08999 * 109.47078 * 300.00059 * 7 5 4 35 35 H 0.97002 * 120.00251 * 185.02136 * 17 16 14 36 36 H 1.08999 * 113.61646 * 334.56786 * 22 13 12 37 37 H 1.08996 * 113.61644 * 105.47195 * 22 13 12 38 38 H 1.09001 * 113.53498 * 270.81424 * 23 22 13 39 39 H 1.08996 * 113.74960 * 139.94267 * 23 22 13 40 40 H 1.09008 * 113.61855 * 254.53155 * 24 13 12 41 41 H 1.09001 * 113.61764 * 25.34834 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0773 0.0000 4 6 3.5453 0.6895 -0.0006 5 6 4.7439 1.6029 -0.0013 6 6 5.5862 1.3382 -1.2508 7 6 5.5873 1.3386 1.2476 8 8 3.5896 -0.6463 -0.0063 9 6 2.3142 -1.0999 -0.0006 10 6 1.8840 -2.5008 -0.0015 11 8 0.6987 -2.7729 -0.0019 12 8 2.8027 -3.4884 -0.0020 13 6 2.3050 -4.8516 0.0487 14 6 1.5204 -5.2342 -1.1798 15 1 0.4764 -5.4970 -1.0935 16 6 2.1353 -5.2486 -2.4137 17 7 3.3696 -4.8121 -2.5386 18 14 1.2152 -5.8882 -3.9083 19 1 -0.0055 -5.0707 -4.1253 20 1 2.0903 -5.7973 -5.1047 21 1 0.8291 -7.3043 -3.6833 22 6 1.5937 -5.1990 1.3669 23 6 2.2890 -6.5703 1.2874 24 6 3.3749 -5.8836 0.4424 25 1 -0.3634 0.0005 -1.0277 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3633 0.8899 0.5143 28 1 4.4099 2.6405 -0.0008 29 1 4.9853 1.5265 -2.1406 30 1 5.9201 0.3006 -1.2508 31 1 6.4528 1.9991 -1.2516 32 1 5.9213 0.3010 1.2476 33 1 6.4540 1.9996 1.2472 34 1 4.9873 1.5272 2.1378 35 1 3.7770 -4.7539 -3.4170 36 1 1.9197 -4.5927 2.2120 37 1 0.5088 -5.2527 1.2767 38 1 1.7160 -7.3176 0.7384 39 1 2.6499 -6.9359 2.2487 40 1 3.7260 -6.4892 -0.3932 41 1 4.1896 -5.4645 1.0330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797242899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:37 Heat of formation + Delta-G solvation = -53.205997 kcal Electronic energy + Delta-G solvation = -24450.292349 eV Core-core repulsion = 20911.684630 eV Total energy + Delta-G solvation = -3538.607719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.13552 -39.26082 -37.15850 -35.68092 -35.11861 -34.14168 -32.34954 -30.86449 -27.71658 -27.34587 -26.19565 -24.63026 -24.39597 -23.01892 -21.50817 -20.80222 -19.78803 -18.62756 -17.48162 -16.61013 -16.53425 -15.60065 -15.28861 -14.99669 -14.83056 -14.23862 -14.10475 -13.86437 -13.33051 -13.24007 -12.98375 -12.86490 -12.35753 -12.31911 -12.09210 -11.66275 -11.61125 -11.44596 -11.19084 -11.17108 -11.07148 -10.95855 -10.73002 -10.63245 -10.50198 -10.33898 -10.00015 -9.88697 -9.60221 -8.88925 -8.65507 -8.61814 -8.44711 -6.15875 -4.29442 1.19631 2.65019 2.71233 3.25329 3.29801 3.33448 3.68618 3.80168 4.09640 4.31292 4.73391 4.86678 4.90429 5.09721 5.14124 5.40130 5.46521 5.58782 5.66409 5.68817 5.71681 5.75266 5.86102 5.88489 5.93319 6.04081 6.07847 6.12170 6.14440 6.23108 6.37244 6.46718 6.56154 6.59409 6.86091 7.05998 7.22316 7.46109 7.65436 7.79432 7.84848 8.20456 8.73623 8.99805 9.40932 10.88046 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.005221 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.609230 B = 5361.445837 C = 5499.812667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.061 3.939 3 N -0.490 5.490 4 C 0.209 3.791 5 C 0.003 3.997 6 C -0.152 4.152 7 C -0.151 4.151 8 O -0.167 6.167 9 C -0.072 4.072 10 C 0.552 3.448 11 O -0.481 6.481 12 O -0.330 6.330 13 C 0.238 3.762 14 C -0.517 4.517 15 H 0.070 0.930 16 C 0.076 3.924 17 N -0.858 5.858 18 Si 0.894 3.106 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.160 4.160 23 C -0.130 4.130 24 C -0.107 4.107 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.112 0.888 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.265 0.735 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.446 9.781 5.656 11.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.062 4.062 3 N -0.220 5.220 4 C 0.003 3.997 5 C -0.016 4.016 6 C -0.210 4.210 7 C -0.209 4.209 8 O -0.052 6.052 9 C -0.126 4.126 10 C 0.394 3.606 11 O -0.371 6.371 12 O -0.245 6.245 13 C 0.205 3.795 14 C -0.554 4.554 15 H 0.088 0.912 16 C -0.131 4.131 17 N -0.494 5.494 18 Si 0.721 3.279 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.198 4.198 23 C -0.168 4.168 24 C -0.145 4.145 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.091 0.909 28 H 0.130 0.870 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.176 10.173 5.534 12.008 hybrid contribution -0.241 -0.923 -1.024 1.399 sum 2.935 9.250 4.510 10.701 Atomic orbital electron populations 1.20339 0.85383 1.03970 1.03626 1.21983 0.98213 0.86314 0.99696 1.70260 1.00357 1.31169 1.20243 1.26404 0.95231 0.79985 0.98066 1.19767 0.88008 0.95968 0.97860 1.21913 0.99599 1.03442 0.96041 1.21909 0.99616 1.03326 0.96023 1.84538 1.29807 1.22701 1.68133 1.22606 0.80997 0.95014 1.14033 1.18703 0.84831 0.82712 0.74366 1.90807 1.17296 1.82600 1.46409 1.86693 1.39164 1.18025 1.80647 1.21345 0.91735 0.74206 0.92233 1.20917 0.96764 1.47101 0.90636 0.91152 1.25109 0.94615 0.94142 0.99230 1.70033 1.12627 1.42780 1.23943 0.86612 0.79853 0.79834 0.81601 1.19930 1.21094 1.19702 1.23577 1.00580 0.96896 0.98725 1.22558 0.99017 0.96472 0.98725 1.22907 0.95980 0.97054 0.98546 0.90203 0.88605 0.90910 0.87002 0.91899 0.91242 0.90884 0.91385 0.90861 0.91987 0.92558 0.92168 0.91536 0.90093 0.92850 0.90600 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 9.87 36.01 0.36 -0.88 16 2 C 0.06 1.18 7.16 -82.45 -0.59 0.59 16 3 N -0.49 -8.76 11.25 -7.06 -0.08 -8.84 16 4 C 0.21 3.47 6.82 -12.79 -0.09 3.38 16 5 C 0.00 0.04 3.39 -91.77 -0.31 -0.27 16 6 C -0.15 -1.61 9.18 37.16 0.34 -1.27 16 7 C -0.15 -1.47 9.18 37.16 0.34 -1.13 16 8 O -0.17 -3.35 10.79 4.39 0.05 -3.31 16 9 C -0.07 -1.57 7.25 -36.88 -0.27 -1.84 16 10 C 0.55 13.55 7.49 34.08 0.26 13.80 16 11 O -0.48 -12.06 13.29 -19.35 -0.26 -12.32 16 12 O -0.33 -8.67 9.77 -41.99 -0.41 -9.08 16 13 C 0.24 6.02 0.47 -90.96 -0.04 5.97 16 14 C -0.52 -14.14 7.09 -34.44 -0.24 -14.39 16 15 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 16 C 0.08 2.08 5.30 -17.82 -0.09 1.98 16 17 N -0.86 -24.29 12.79 55.43 0.71 -23.58 16 18 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 C -0.16 -3.50 6.57 -25.83 -0.17 -3.67 16 23 C -0.13 -2.58 7.81 -25.83 -0.20 -2.78 16 24 C -0.11 -2.45 7.28 -25.92 -0.19 -2.63 16 25 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.10 1.64 6.47 -51.93 -0.34 1.30 16 27 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 28 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.26 7.16 8.32 -40.82 -0.34 6.82 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.47 8.08 -51.93 -0.42 1.05 16 38 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 1.84 7.98 -51.92 -0.41 1.43 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 348.14 15.07 5.25 5.25 Total: -1.00 -31.31 348.14 -6.88 -38.19 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.21 Total: 0.68 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -0.91 Total: -3.14 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.63 Total: -32.42 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.62 Total: -24.71 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.31 -6.88 -38.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797242899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.017 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds