Wall clock time and date at job start Tue Mar 31 2020 06:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33648 * 126.28345 * 2 1 4 4 C 1.30629 * 109.01015 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.41754 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47555 * 239.99800 * 5 4 3 7 7 C 1.53004 * 109.47255 * 119.99814 * 5 4 3 8 8 O 1.33651 * 109.17264 * 0.24309 * 4 3 2 9 9 C 1.35362 * 107.67924 * 359.61057 * 8 4 3 10 10 C 1.46545 * 126.65267 * 180.11264 * 9 8 4 11 11 O 1.21609 * 120.00316 * 180.32735 * 10 9 8 12 12 O 1.34884 * 119.99913 * 0.31995 * 10 9 8 13 13 C 1.45204 * 116.99955 * 177.71727 * 12 10 9 14 14 C 1.50704 * 112.84925 * 65.17611 * 13 12 10 15 15 H 1.08000 * 119.99863 * 242.51200 * 14 13 12 16 16 C 1.37874 * 119.99818 * 62.51015 * 14 13 12 17 17 N 1.31518 * 120.00583 * 353.77304 * 16 14 13 18 18 Si 1.86801 * 119.99770 * 173.77241 * 16 14 13 19 19 H 1.48506 * 109.46879 * 60.00043 * 18 16 14 20 20 H 1.48504 * 109.47244 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47253 * 299.99899 * 18 16 14 22 22 C 1.53772 * 113.61318 * 293.97882 * 13 12 10 23 23 C 1.53954 * 87.02184 * 220.04960 * 22 13 12 24 24 C 1.53776 * 113.61289 * 196.37089 * 13 12 10 25 25 H 1.09006 * 109.47535 * 89.96989 * 1 2 3 26 26 H 1.09000 * 109.47561 * 209.97632 * 1 2 3 27 27 H 1.09008 * 109.46638 * 329.97579 * 1 2 3 28 28 H 1.09003 * 109.46879 * 0.02562 * 5 4 3 29 29 H 1.09000 * 109.46981 * 59.99834 * 6 5 4 30 30 H 1.08994 * 109.47171 * 299.99951 * 6 5 4 31 31 H 1.08994 * 109.47398 * 179.97438 * 6 5 4 32 32 H 1.08994 * 109.47083 * 60.00287 * 7 5 4 33 33 H 1.09003 * 109.46763 * 180.02562 * 7 5 4 34 34 H 1.08999 * 109.47078 * 300.00059 * 7 5 4 35 35 H 0.97002 * 120.00251 * 185.02136 * 17 16 14 36 36 H 1.08999 * 113.61646 * 334.56786 * 22 13 12 37 37 H 1.08996 * 113.61644 * 105.47195 * 22 13 12 38 38 H 1.09001 * 113.53498 * 270.81424 * 23 22 13 39 39 H 1.08996 * 113.74960 * 139.94267 * 23 22 13 40 40 H 1.09008 * 113.61855 * 254.53155 * 24 13 12 41 41 H 1.09001 * 113.61764 * 25.34834 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0773 0.0000 4 6 3.5453 0.6895 -0.0006 5 6 4.7439 1.6029 -0.0013 6 6 5.5862 1.3382 -1.2508 7 6 5.5873 1.3386 1.2476 8 8 3.5896 -0.6463 -0.0063 9 6 2.3142 -1.0999 -0.0006 10 6 1.8840 -2.5008 -0.0015 11 8 0.6987 -2.7729 -0.0019 12 8 2.8027 -3.4884 -0.0020 13 6 2.3050 -4.8516 0.0487 14 6 1.5204 -5.2342 -1.1798 15 1 0.4764 -5.4970 -1.0935 16 6 2.1353 -5.2486 -2.4137 17 7 3.3696 -4.8121 -2.5386 18 14 1.2152 -5.8882 -3.9083 19 1 -0.0055 -5.0707 -4.1253 20 1 2.0903 -5.7973 -5.1047 21 1 0.8291 -7.3043 -3.6833 22 6 1.5937 -5.1990 1.3669 23 6 2.2890 -6.5703 1.2874 24 6 3.3749 -5.8836 0.4424 25 1 -0.3634 0.0005 -1.0277 26 1 -0.3634 -0.8902 0.5135 27 1 -0.3633 0.8899 0.5143 28 1 4.4099 2.6405 -0.0008 29 1 4.9853 1.5265 -2.1406 30 1 5.9201 0.3006 -1.2508 31 1 6.4528 1.9991 -1.2516 32 1 5.9213 0.3010 1.2476 33 1 6.4540 1.9996 1.2472 34 1 4.9873 1.5272 2.1378 35 1 3.7770 -4.7539 -3.4170 36 1 1.9197 -4.5927 2.2120 37 1 0.5088 -5.2527 1.2767 38 1 1.7160 -7.3176 0.7384 39 1 2.6499 -6.9359 2.2487 40 1 3.7260 -6.4892 -0.3932 41 1 4.1896 -5.4645 1.0330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797242899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:37 Heat of formation + Delta-G solvation = -72.673344 kcal Electronic energy + Delta-G solvation = -24451.136516 eV Core-core repulsion = 20911.684630 eV Total energy + Delta-G solvation = -3539.451886 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.60967 -41.12731 -38.96137 -36.70418 -36.66008 -35.94714 -34.42215 -32.25468 -29.24959 -28.16227 -28.15642 -26.42244 -25.85832 -24.67566 -23.03509 -22.24406 -21.13716 -20.51815 -19.28962 -18.35205 -18.12175 -17.15902 -16.84650 -16.83791 -16.24035 -16.09976 -15.63842 -15.19844 -15.04379 -14.38552 -14.29530 -14.21123 -14.12082 -13.56687 -13.36979 -13.11124 -13.02705 -12.97983 -12.84217 -12.60935 -12.40008 -12.33046 -12.18516 -12.15076 -12.04293 -12.00802 -11.85938 -11.72278 -11.39815 -10.84534 -10.62223 -10.52757 -9.99079 -8.23248 -6.42859 -0.36535 1.20003 1.24524 1.35468 1.37328 1.44464 1.93488 2.20723 2.33775 2.69949 3.07028 3.52724 3.74362 3.91150 3.96183 3.97635 3.98681 4.13481 4.29124 4.38890 4.40013 4.57990 4.62077 4.72045 4.74414 4.79976 4.81611 4.85694 4.86916 4.89847 5.01523 5.13318 5.22015 5.25974 5.28416 5.33685 5.37136 5.57547 5.69420 5.82627 6.23965 6.37891 6.63234 7.08419 7.31631 8.80140 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.005221 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.609230 B = 5361.445837 C = 5499.812667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.080 3.920 3 N -0.501 5.501 4 C 0.229 3.771 5 C 0.001 3.999 6 C -0.150 4.150 7 C -0.147 4.147 8 O -0.186 6.186 9 C -0.124 4.124 10 C 0.546 3.454 11 O -0.500 6.500 12 O -0.350 6.350 13 C 0.211 3.789 14 C -0.530 4.530 15 H 0.057 0.943 16 C 0.031 3.969 17 N -0.887 5.887 18 Si 0.951 3.049 19 H -0.279 1.279 20 H -0.279 1.279 21 H -0.259 1.259 22 C -0.153 4.153 23 C -0.108 4.108 24 C -0.108 4.108 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.104 0.896 28 H 0.140 0.860 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.111 0.889 32 H 0.049 0.951 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.264 0.736 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.053 0.947 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.904 11.209 6.186 13.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.043 4.043 3 N -0.231 5.231 4 C 0.024 3.976 5 C -0.018 4.018 6 C -0.207 4.207 7 C -0.205 4.205 8 O -0.073 6.073 9 C -0.177 4.177 10 C 0.390 3.610 11 O -0.392 6.392 12 O -0.266 6.266 13 C 0.177 3.823 14 C -0.567 4.567 15 H 0.075 0.925 16 C -0.172 4.172 17 N -0.524 5.524 18 Si 0.776 3.224 19 H -0.205 1.205 20 H -0.205 1.205 21 H -0.183 1.183 22 C -0.191 4.191 23 C -0.145 4.145 24 C -0.146 4.146 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.122 0.878 28 H 0.157 0.843 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.129 0.871 32 H 0.069 0.931 33 H 0.128 0.872 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.626 11.596 6.074 13.583 hybrid contribution -0.328 -1.194 -1.160 1.696 sum 3.297 10.402 4.914 11.968 Atomic orbital electron populations 1.20442 0.83563 1.04914 1.04314 1.22479 0.99422 0.85876 0.96528 1.70372 1.00705 1.30302 1.21674 1.27783 0.96617 0.79269 0.93955 1.20261 0.86475 0.95910 0.99184 1.21932 1.00635 1.03067 0.95100 1.21926 1.00519 1.03168 0.94875 1.84518 1.29373 1.24406 1.68983 1.22236 0.82223 0.94252 1.18972 1.19036 0.84609 0.83600 0.73735 1.90763 1.17642 1.83306 1.47491 1.86659 1.40017 1.18772 1.81153 1.21667 0.93287 0.74227 0.93077 1.21075 0.96339 1.47230 0.92025 0.92455 1.25805 0.95395 0.94278 1.01764 1.70141 1.13873 1.44020 1.24337 0.85725 0.78398 0.79725 0.78584 1.20464 1.20451 1.18311 1.23507 0.99915 0.98307 0.97373 1.22480 0.96913 0.95205 0.99907 1.22901 0.96599 0.96561 0.98493 0.89445 0.89755 0.87777 0.84254 0.92728 0.93391 0.87051 0.93141 0.87228 0.92037 0.92688 0.91104 0.92405 0.90130 0.88892 0.92807 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.40 9.87 71.24 0.70 -1.69 16 2 C 0.08 3.08 7.16 41.86 0.30 3.38 16 3 N -0.50 -17.31 11.25 -291.03 -3.28 -20.58 16 4 C 0.23 7.41 6.82 88.29 0.60 8.01 16 5 C 0.00 0.02 3.39 -11.54 -0.04 -0.02 16 6 C -0.15 -2.86 9.18 71.98 0.66 -2.20 16 7 C -0.15 -2.50 9.18 71.98 0.66 -1.84 16 8 O -0.19 -7.65 10.79 -7.14 -0.08 -7.73 16 9 C -0.12 -5.52 7.25 24.02 0.17 -5.35 16 10 C 0.55 27.87 7.49 69.99 0.52 28.39 16 11 O -0.50 -26.06 13.29 19.48 0.26 -25.80 16 12 O -0.35 -19.11 9.77 -57.04 -0.56 -19.67 16 13 C 0.21 10.90 0.47 -11.02 -0.01 10.90 16 14 C -0.53 -29.74 7.09 25.60 0.18 -29.56 16 15 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 16 C 0.03 1.74 5.30 84.65 0.45 2.19 16 17 N -0.89 -51.64 12.79 21.45 0.27 -51.36 16 18 Si 0.95 44.15 29.54 68.60 2.03 46.18 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 22 C -0.15 -6.72 6.57 31.18 0.20 -6.51 16 23 C -0.11 -4.14 7.81 31.18 0.24 -3.90 16 24 C -0.11 -4.96 7.28 31.12 0.23 -4.73 16 25 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 26 H 0.08 2.90 6.47 -2.39 -0.02 2.89 16 27 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 28 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.26 14.66 8.32 -92.71 -0.77 13.89 16 36 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 37 H 0.06 2.59 8.08 -2.39 -0.02 2.57 16 38 H 0.08 3.09 8.14 -2.39 -0.02 3.08 16 39 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 40 H 0.05 2.67 7.98 -2.38 -0.02 2.65 16 41 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -70.30 348.14 4.56 -65.75 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 1.02 Total: 16.14 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 4.89 Total: -2.93 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: -3.00 Total: -71.95 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -0.38 Total: -53.19 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -70.30 4.56 -65.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797242899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.925 kcal (2) G-P(sol) polarization free energy of solvation -70.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds