Wall clock time and date at job start Tue Mar 31 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34811 * 126.63512 * 2 1 4 4 C 1.47681 * 125.45178 * 359.94563 * 3 2 1 5 5 O 1.21570 * 119.99905 * 354.69792 * 4 3 2 6 6 N 1.34778 * 120.00027 * 174.69754 * 4 3 2 7 7 C 1.46504 * 120.00159 * 185.44984 * 6 4 3 8 8 C 1.52993 * 109.47125 * 184.71158 * 7 6 4 9 9 C 1.50703 * 115.54727 * 305.46982 * 8 7 6 10 10 H 1.08002 * 119.99858 * 145.12031 * 9 8 7 11 11 C 1.37878 * 120.00262 * 325.11620 * 9 8 7 12 12 N 1.31513 * 119.99690 * 1.08218 * 11 9 8 13 13 Si 1.86802 * 119.99977 * 181.08022 * 11 9 8 14 14 H 1.48506 * 109.47066 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46682 * 120.00134 * 13 11 9 16 16 H 1.48496 * 109.46995 * 240.00270 * 13 11 9 17 17 C 1.53003 * 117.50099 * 159.80652 * 8 7 6 18 18 C 1.52999 * 117.50184 * 91.14566 * 8 7 6 19 19 C 1.47181 * 109.09896 * 180.10611 * 3 2 1 20 20 O 1.21496 * 125.02233 * 179.83767 * 19 3 2 21 21 O 1.34477 * 109.95799 * 359.57695 * 19 3 2 22 22 C 1.45445 * 107.98586 * 0.24259 * 21 19 3 23 23 C 1.52997 * 110.10696 * 119.19129 * 22 21 19 24 24 C 1.53007 * 110.10391 * 240.81249 * 22 21 19 25 25 H 1.09002 * 109.46992 * 270.35478 * 1 2 3 26 26 H 1.09004 * 109.47244 * 30.35043 * 1 2 3 27 27 H 1.08998 * 109.47328 * 150.35324 * 1 2 3 28 28 H 0.97004 * 120.00151 * 5.44352 * 6 4 3 29 29 H 1.09008 * 109.46800 * 304.70460 * 7 6 4 30 30 H 1.08994 * 109.47024 * 64.70276 * 7 6 4 31 31 H 0.97004 * 119.99455 * 185.00139 * 12 11 9 32 32 H 1.09005 * 117.49441 * 359.97438 * 17 8 7 33 33 H 1.08999 * 117.50003 * 145.01137 * 17 8 7 34 34 H 1.09007 * 117.49516 * 214.97616 * 18 8 7 35 35 H 1.08998 * 117.50025 * 359.97438 * 18 8 7 36 36 H 1.09000 * 109.47322 * 61.45333 * 23 22 21 37 37 H 1.09004 * 109.47481 * 181.45144 * 23 22 21 38 38 H 1.08995 * 109.47144 * 301.45456 * 23 22 21 39 39 H 1.09001 * 109.47233 * 58.54029 * 24 22 21 40 40 H 1.08996 * 109.47607 * 178.54730 * 24 22 21 41 41 H 1.09009 * 109.46889 * 298.54651 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3114 1.0818 0.0000 4 6 1.8572 2.4870 -0.0011 5 8 0.6728 2.7429 -0.0995 6 7 2.7557 3.4858 0.1068 7 6 2.2987 4.8726 0.2260 8 6 3.5073 5.8106 0.2150 9 6 4.5687 5.5151 1.2432 10 1 5.6097 5.6800 1.0075 11 6 4.2108 5.0343 2.4849 12 7 2.9449 4.8134 2.7646 13 14 5.5241 4.6966 3.7698 14 1 6.8599 5.0253 3.2105 15 1 5.2702 5.5347 4.9691 16 1 5.4860 3.2620 4.1512 17 6 3.2601 7.2773 -0.1436 18 6 3.9674 6.3543 -1.1391 19 6 3.7148 0.6383 -0.0026 20 8 4.6795 1.3770 -0.0060 21 8 3.7717 -0.7052 0.0052 22 6 2.4085 -1.2124 0.0074 23 6 2.1606 -2.0598 -1.2421 24 6 2.1593 -2.0453 1.2665 25 1 -0.3633 0.0064 1.0277 26 1 -0.3634 0.8868 -0.5193 27 1 -0.3634 -0.8931 -0.5083 28 1 3.7050 3.2864 0.1058 29 1 1.6447 5.1129 -0.6124 30 1 1.7515 4.9958 1.1605 31 1 2.6859 4.5448 3.6600 32 1 2.2364 7.5738 -0.3722 33 1 3.8654 8.0284 0.3639 34 1 5.0378 6.4986 -1.2861 35 1 3.4092 6.0434 -2.0223 36 1 2.8373 -2.9143 -1.2418 37 1 1.1294 -2.4130 -1.2429 38 1 2.3384 -1.4558 -2.1319 39 1 2.3363 -1.4311 2.1494 40 1 1.1282 -2.3985 1.2704 41 1 2.8361 -2.8998 1.2767 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797560749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:02 Heat of formation + Delta-G solvation = -72.854032 kcal Electronic energy + Delta-G solvation = -24546.460651 eV Core-core repulsion = 21007.000929 eV Total energy + Delta-G solvation = -3539.459722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.66373 -38.64291 -37.68066 -36.64224 -34.57992 -32.98171 -32.28959 -32.10795 -28.74570 -27.80612 -26.11545 -25.34598 -23.39693 -22.28921 -21.17699 -20.06500 -19.34992 -19.06110 -17.01366 -16.36359 -16.33961 -15.88783 -15.26891 -14.81839 -14.73690 -14.39314 -14.15979 -13.78335 -13.67831 -13.41333 -13.22935 -12.94007 -12.58090 -12.54905 -12.46772 -12.44321 -12.02742 -11.75192 -11.47368 -11.37645 -11.03984 -10.92530 -10.68414 -10.46004 -10.21207 -10.17305 -9.67063 -9.37402 -9.17906 -8.90694 -8.82063 -8.23298 -7.80728 -5.96723 -4.13385 0.67567 2.63587 2.92294 3.27151 3.36204 3.40657 3.61205 3.87349 3.95566 4.24213 4.36612 4.46005 4.49708 4.94917 5.02332 5.17908 5.21454 5.31805 5.33438 5.44183 5.52569 5.53617 5.65040 5.74129 5.81102 5.93906 6.07149 6.24253 6.35597 6.58164 6.66025 6.67460 6.74805 6.92695 7.13533 7.30572 7.57926 7.59987 7.65944 7.99573 8.36122 8.59790 8.88170 9.13978 9.49764 10.94258 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.005655 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.706379 B = 4950.448664 C = 5626.148624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.017 4.017 3 C -0.248 4.248 4 C 0.567 3.433 5 O -0.561 6.561 6 N -0.664 5.664 7 C 0.162 3.838 8 C 0.033 3.967 9 C -0.489 4.489 10 H 0.062 0.938 11 C 0.073 3.927 12 N -0.874 5.874 13 Si 0.894 3.106 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.196 4.196 18 C -0.211 4.211 19 C 0.504 3.496 20 O -0.435 6.435 21 O -0.317 6.317 22 C 0.113 3.887 23 C -0.147 4.147 24 C -0.148 4.148 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.412 0.588 29 H 0.026 0.974 30 H 0.117 0.883 31 H 0.260 0.740 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.384 -14.710 -4.885 16.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.020 4.020 3 C -0.253 4.253 4 C 0.351 3.649 5 O -0.444 6.444 6 N -0.311 5.311 7 C 0.039 3.961 8 C 0.032 3.968 9 C -0.526 4.526 10 H 0.081 0.919 11 C -0.130 4.130 12 N -0.511 5.511 13 Si 0.721 3.279 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.235 4.235 18 C -0.249 4.249 19 C 0.346 3.654 20 O -0.318 6.318 21 O -0.234 6.234 22 C 0.075 3.925 23 C -0.204 4.204 24 C -0.205 4.205 25 H 0.110 0.890 26 H 0.126 0.874 27 H 0.093 0.907 28 H 0.250 0.750 29 H 0.044 0.956 30 H 0.134 0.866 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.598 -14.398 -4.788 16.173 hybrid contribution 1.251 -0.094 0.788 1.482 sum -4.347 -14.492 -3.999 15.650 Atomic orbital electron populations 1.20791 0.86562 1.04899 1.04225 1.23962 0.97835 0.92866 0.87368 1.22699 0.94331 0.96967 1.11306 1.17107 0.86070 0.83025 0.78693 1.90653 1.16337 1.83892 1.53491 1.45831 1.10565 1.06909 1.67810 1.21191 0.95405 0.78009 1.01459 1.19240 0.95262 0.90340 0.91915 1.20579 0.92032 1.43117 0.96904 0.91945 1.24977 0.95501 0.94053 0.98473 1.69856 1.15107 1.45965 1.20165 0.86493 0.82096 0.77960 0.81328 1.19577 1.20921 1.20934 1.22935 0.98847 0.96739 1.04934 1.22952 0.99039 1.08585 0.94298 1.20989 0.89472 0.81173 0.73796 1.90924 1.42510 1.54249 1.44149 1.87398 1.29069 1.21907 1.85023 1.22010 0.77962 0.93246 0.99256 1.21997 1.03442 0.99887 0.95044 1.22003 1.03431 1.00046 0.95003 0.89046 0.87389 0.90730 0.74992 0.95618 0.86572 0.92901 0.91440 0.90157 0.90543 0.91356 0.90261 0.89636 0.91124 0.91034 0.89618 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.82 36.00 0.35 -0.83 16 2 C -0.02 -0.23 5.12 -100.38 -0.51 -0.75 16 3 C -0.25 -4.52 6.15 -103.63 -0.64 -5.16 16 4 C 0.57 12.48 7.81 -12.40 -0.10 12.38 16 5 O -0.56 -12.87 14.58 5.30 0.08 -12.79 16 6 N -0.66 -15.90 5.16 -61.30 -0.32 -16.21 16 7 C 0.16 4.03 4.63 -4.04 -0.02 4.01 16 8 C 0.03 0.83 2.06 -155.66 -0.32 0.51 16 9 C -0.49 -13.23 8.31 -34.44 -0.29 -13.51 16 10 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 11 C 0.07 1.98 5.29 -17.82 -0.09 1.88 16 12 N -0.87 -24.00 10.22 55.43 0.57 -23.43 16 13 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 C -0.20 -4.43 9.96 -26.69 -0.27 -4.69 16 18 C -0.21 -4.68 9.92 -26.69 -0.26 -4.95 16 19 C 0.50 9.56 8.53 34.36 0.29 9.85 16 20 O -0.43 -9.72 15.88 -18.92 -0.30 -10.02 16 21 O -0.32 -4.94 10.58 -39.53 -0.42 -5.36 16 22 C 0.11 1.28 1.39 -91.58 -0.13 1.15 16 23 C -0.15 -1.16 8.90 37.16 0.33 -0.83 16 24 C -0.15 -1.28 8.93 37.16 0.33 -0.94 16 25 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.11 1.46 6.27 -51.93 -0.33 1.13 16 27 H 0.07 0.52 7.56 -51.93 -0.39 0.13 16 28 H 0.41 10.25 5.66 -40.82 -0.23 10.02 16 29 H 0.03 0.62 8.05 -51.92 -0.42 0.20 16 30 H 0.12 3.19 5.90 -51.93 -0.31 2.89 16 31 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 32 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 34 H 0.08 1.66 8.14 -51.92 -0.42 1.23 16 35 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.45 7.60 -51.93 -0.39 0.06 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 LS Contribution 342.70 15.07 5.16 5.16 Total: -1.00 -31.26 342.70 -7.41 -38.67 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.84 Total: 9.42 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -1.32 Total: -1.87 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.25 Total: -39.64 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.64 Total: -28.17 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.26 -7.41 -38.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797560749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.185 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds