Wall clock time and date at job start Tue Mar 31 2020 06:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34811 * 126.63512 * 2 1 4 4 C 1.47681 * 125.45178 * 359.94563 * 3 2 1 5 5 O 1.21570 * 119.99905 * 354.69792 * 4 3 2 6 6 N 1.34778 * 120.00027 * 174.69754 * 4 3 2 7 7 C 1.46504 * 120.00159 * 185.44984 * 6 4 3 8 8 C 1.52993 * 109.47125 * 184.71158 * 7 6 4 9 9 C 1.50703 * 115.54727 * 305.46982 * 8 7 6 10 10 H 1.08002 * 119.99858 * 145.12031 * 9 8 7 11 11 C 1.37878 * 120.00262 * 325.11620 * 9 8 7 12 12 N 1.31513 * 119.99690 * 1.08218 * 11 9 8 13 13 Si 1.86802 * 119.99977 * 181.08022 * 11 9 8 14 14 H 1.48506 * 109.47066 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46682 * 120.00134 * 13 11 9 16 16 H 1.48496 * 109.46995 * 240.00270 * 13 11 9 17 17 C 1.53003 * 117.50099 * 159.80652 * 8 7 6 18 18 C 1.52999 * 117.50184 * 91.14566 * 8 7 6 19 19 C 1.47181 * 109.09896 * 180.10611 * 3 2 1 20 20 O 1.21496 * 125.02233 * 179.83767 * 19 3 2 21 21 O 1.34477 * 109.95799 * 359.57695 * 19 3 2 22 22 C 1.45445 * 107.98586 * 0.24259 * 21 19 3 23 23 C 1.52997 * 110.10696 * 119.19129 * 22 21 19 24 24 C 1.53007 * 110.10391 * 240.81249 * 22 21 19 25 25 H 1.09002 * 109.46992 * 270.35478 * 1 2 3 26 26 H 1.09004 * 109.47244 * 30.35043 * 1 2 3 27 27 H 1.08998 * 109.47328 * 150.35324 * 1 2 3 28 28 H 0.97004 * 120.00151 * 5.44352 * 6 4 3 29 29 H 1.09008 * 109.46800 * 304.70460 * 7 6 4 30 30 H 1.08994 * 109.47024 * 64.70276 * 7 6 4 31 31 H 0.97004 * 119.99455 * 185.00139 * 12 11 9 32 32 H 1.09005 * 117.49441 * 359.97438 * 17 8 7 33 33 H 1.08999 * 117.50003 * 145.01137 * 17 8 7 34 34 H 1.09007 * 117.49516 * 214.97616 * 18 8 7 35 35 H 1.08998 * 117.50025 * 359.97438 * 18 8 7 36 36 H 1.09000 * 109.47322 * 61.45333 * 23 22 21 37 37 H 1.09004 * 109.47481 * 181.45144 * 23 22 21 38 38 H 1.08995 * 109.47144 * 301.45456 * 23 22 21 39 39 H 1.09001 * 109.47233 * 58.54029 * 24 22 21 40 40 H 1.08996 * 109.47607 * 178.54730 * 24 22 21 41 41 H 1.09009 * 109.46889 * 298.54651 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3114 1.0818 0.0000 4 6 1.8572 2.4870 -0.0011 5 8 0.6728 2.7429 -0.0995 6 7 2.7557 3.4858 0.1068 7 6 2.2987 4.8726 0.2260 8 6 3.5073 5.8106 0.2150 9 6 4.5687 5.5151 1.2432 10 1 5.6097 5.6800 1.0075 11 6 4.2108 5.0343 2.4849 12 7 2.9449 4.8134 2.7646 13 14 5.5241 4.6966 3.7698 14 1 6.8599 5.0253 3.2105 15 1 5.2702 5.5347 4.9691 16 1 5.4860 3.2620 4.1512 17 6 3.2601 7.2773 -0.1436 18 6 3.9674 6.3543 -1.1391 19 6 3.7148 0.6383 -0.0026 20 8 4.6795 1.3770 -0.0060 21 8 3.7717 -0.7052 0.0052 22 6 2.4085 -1.2124 0.0074 23 6 2.1606 -2.0598 -1.2421 24 6 2.1593 -2.0453 1.2665 25 1 -0.3633 0.0064 1.0277 26 1 -0.3634 0.8868 -0.5193 27 1 -0.3634 -0.8931 -0.5083 28 1 3.7050 3.2864 0.1058 29 1 1.6447 5.1129 -0.6124 30 1 1.7515 4.9958 1.1605 31 1 2.6859 4.5448 3.6600 32 1 2.2364 7.5738 -0.3722 33 1 3.8654 8.0284 0.3639 34 1 5.0378 6.4986 -1.2861 35 1 3.4092 6.0434 -2.0223 36 1 2.8373 -2.9143 -1.2418 37 1 1.1294 -2.4130 -1.2429 38 1 2.3384 -1.4558 -2.1319 39 1 2.3363 -1.4311 2.1494 40 1 1.1282 -2.3985 1.2704 41 1 2.8361 -2.8998 1.2767 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797560749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:01 Heat of formation + Delta-G solvation = -92.344702 kcal Electronic energy + Delta-G solvation = -24547.305830 eV Core-core repulsion = 21007.000929 eV Total energy + Delta-G solvation = -3540.304900 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.89057 -40.33243 -39.08915 -38.48632 -35.75194 -34.77695 -34.15108 -33.30976 -29.88510 -28.44194 -27.94044 -27.29398 -24.50187 -23.81050 -22.97831 -21.34603 -21.02219 -20.73932 -18.64669 -17.94915 -17.59910 -17.41616 -16.83763 -16.75890 -16.02295 -15.89128 -15.74789 -15.31681 -14.84066 -14.74702 -14.48921 -14.21486 -14.15237 -13.66032 -13.45679 -13.36523 -13.26377 -13.08718 -12.98740 -12.82023 -12.64397 -12.47092 -12.34994 -12.09286 -11.96018 -11.60686 -11.49247 -11.02653 -10.81644 -10.70680 -10.64900 -10.18146 -9.67004 -8.00992 -6.23337 -0.55972 1.15593 1.33636 1.38287 1.47530 1.75525 2.26946 2.36026 2.46402 2.62648 2.87145 3.06931 3.54917 3.60499 3.71637 3.81099 4.14155 4.23716 4.35709 4.48122 4.63772 4.66283 4.68358 4.70803 4.72434 4.73774 4.76289 4.88290 4.91557 5.06860 5.10115 5.19872 5.26215 5.32712 5.47771 5.49212 5.55654 5.80867 5.92467 6.20805 6.32973 6.70813 6.90537 7.36501 7.40721 8.87441 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.005655 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.706379 B = 4950.448664 C = 5626.148624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.043 3.957 3 C -0.314 4.314 4 C 0.564 3.436 5 O -0.580 6.580 6 N -0.678 5.678 7 C 0.174 3.826 8 C -0.001 4.001 9 C -0.502 4.502 10 H 0.051 0.949 11 C 0.035 3.965 12 N -0.891 5.891 13 Si 0.944 3.056 14 H -0.270 1.270 15 H -0.274 1.274 16 H -0.289 1.289 17 C -0.186 4.186 18 C -0.193 4.193 19 C 0.506 3.494 20 O -0.490 6.490 21 O -0.322 6.322 22 C 0.101 3.899 23 C -0.144 4.144 24 C -0.146 4.146 25 H 0.109 0.891 26 H 0.082 0.918 27 H 0.130 0.870 28 H 0.405 0.595 29 H 0.026 0.974 30 H 0.087 0.913 31 H 0.258 0.742 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.126 0.874 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.799 -17.601 -5.261 19.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.040 3.960 3 C -0.318 4.318 4 C 0.351 3.649 5 O -0.464 6.464 6 N -0.325 5.325 7 C 0.051 3.949 8 C -0.002 4.002 9 C -0.540 4.540 10 H 0.069 0.931 11 C -0.166 4.166 12 N -0.528 5.528 13 Si 0.770 3.230 14 H -0.195 1.195 15 H -0.199 1.199 16 H -0.216 1.216 17 C -0.224 4.224 18 C -0.230 4.230 19 C 0.351 3.649 20 O -0.378 6.378 21 O -0.238 6.238 22 C 0.064 3.936 23 C -0.200 4.200 24 C -0.203 4.203 25 H 0.127 0.873 26 H 0.100 0.900 27 H 0.148 0.852 28 H 0.242 0.758 29 H 0.044 0.956 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.144 0.856 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.144 0.856 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.037 -17.315 -5.170 19.392 hybrid contribution 1.542 0.621 0.860 1.871 sum -5.495 -16.694 -4.310 18.096 Atomic orbital electron populations 1.21043 0.84073 1.06400 1.05465 1.24714 0.99317 0.92351 0.79632 1.22274 0.94959 0.95945 1.18656 1.17600 0.85628 0.84331 0.77305 1.90617 1.16747 1.84723 1.54359 1.45865 1.10477 1.07017 1.69116 1.20870 0.95155 0.79092 0.99778 1.19323 0.95474 0.91914 0.93453 1.20719 0.91998 1.43441 0.97810 0.93063 1.25537 0.97004 0.94091 0.99939 1.70002 1.16135 1.46536 1.20146 0.85713 0.80203 0.77365 0.79684 1.19487 1.19892 1.21560 1.22941 0.99779 0.95323 1.04370 1.22943 0.99464 1.06989 0.93643 1.21101 0.89227 0.81954 0.72633 1.90872 1.43876 1.55763 1.47334 1.87385 1.32117 1.20018 1.84311 1.22725 0.75325 0.92611 1.02891 1.22137 1.06431 0.99353 0.92108 1.22139 1.06477 0.99567 0.92110 0.87321 0.89966 0.85169 0.75783 0.95606 0.89528 0.93190 0.89934 0.90136 0.90176 0.89865 0.88501 0.85603 0.92231 0.93070 0.85575 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 9.82 71.24 0.70 -1.35 16 2 C 0.04 1.06 5.12 -17.11 -0.09 0.97 16 3 C -0.31 -11.60 6.15 -19.22 -0.12 -11.72 16 4 C 0.56 25.84 7.81 86.74 0.68 26.52 16 5 O -0.58 -27.38 14.58 -3.94 -0.06 -27.43 16 6 N -0.68 -34.12 5.16 -466.13 -2.41 -36.53 16 7 C 0.17 9.04 4.63 86.38 0.40 9.44 16 8 C 0.00 -0.05 2.06 -52.93 -0.11 -0.16 16 9 C -0.50 -28.02 8.31 25.60 0.21 -27.80 16 10 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 11 C 0.04 1.97 5.29 84.66 0.45 2.42 16 12 N -0.89 -50.58 10.22 21.45 0.22 -50.36 16 13 Si 0.94 45.15 29.54 68.60 2.03 47.17 16 14 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 17 C -0.19 -8.37 9.96 30.62 0.30 -8.07 16 18 C -0.19 -8.56 9.92 30.62 0.30 -8.25 16 19 C 0.51 19.89 8.53 70.17 0.60 20.49 16 20 O -0.49 -23.36 15.88 19.53 0.31 -23.05 16 21 O -0.32 -9.82 10.58 -54.21 -0.57 -10.39 16 22 C 0.10 1.96 1.39 -11.42 -0.02 1.95 16 23 C -0.14 -1.58 8.90 71.98 0.64 -0.94 16 24 C -0.15 -1.89 8.93 71.98 0.64 -1.25 16 25 H 0.11 1.76 8.14 -2.39 -0.02 1.75 16 26 H 0.08 2.06 6.27 -2.38 -0.01 2.04 16 27 H 0.13 0.95 7.56 -2.39 -0.02 0.93 16 28 H 0.41 21.45 5.66 -92.71 -0.52 20.92 16 29 H 0.03 1.29 8.05 -2.38 -0.02 1.27 16 30 H 0.09 4.99 5.90 -2.39 -0.01 4.98 16 31 H 0.26 14.17 8.32 -92.70 -0.77 13.40 16 32 H 0.08 3.44 8.14 -2.38 -0.02 3.42 16 33 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 34 H 0.08 3.46 8.14 -2.38 -0.02 3.44 16 35 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 36 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.13 0.43 7.60 -2.39 -0.02 0.41 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 39 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -73.69 342.70 4.64 -69.05 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 0.52 Total: 29.30 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 4.60 Total: 2.23 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -2.19 Total: -86.88 kcal Atomic # 8 Polarization: -60.55 SS G_CDS: -0.32 Total: -60.87 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -73.69 4.64 -69.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797560749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.292 kcal (2) G-P(sol) polarization free energy of solvation -73.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds