Wall clock time and date at job start Tue Mar 31 2020 07:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46799 * 2 1 4 4 C 1.53002 * 109.46668 * 240.00505 * 2 1 3 5 5 C 1.50700 * 109.47344 * 59.99779 * 4 2 1 6 6 H 1.07999 * 119.99692 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99973 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00067 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00050 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47019 * 89.99647 * 9 7 5 11 11 H 1.48499 * 109.47148 * 209.99990 * 9 7 5 12 12 H 1.48508 * 109.47052 * 330.00085 * 9 7 5 13 13 C 1.52993 * 109.47173 * 120.00484 * 2 1 3 14 14 N 1.46501 * 109.47283 * 299.99433 * 13 2 1 15 15 C 1.29532 * 119.99575 * 114.99873 * 14 13 2 16 16 C 1.47204 * 119.99722 * 180.02562 * 15 14 13 17 17 C 1.39872 * 120.12166 * 180.02562 * 16 15 14 18 18 C 1.37662 * 120.02926 * 179.97438 * 17 16 15 19 19 C 1.39014 * 120.27901 * 359.78904 * 18 17 16 20 20 O 1.35851 * 119.88017 * 180.23022 * 19 18 17 21 21 C 1.39026 * 120.24101 * 0.46545 * 19 18 17 22 22 O 1.36098 * 120.01841 * 179.78393 * 21 19 18 23 23 C 1.38786 * 119.96529 * 359.51480 * 21 19 18 24 24 O 1.35806 * 120.13442 * 180.27430 * 23 21 19 25 25 H 1.09006 * 109.47016 * 299.99231 * 1 2 3 26 26 H 1.08999 * 109.47933 * 59.99780 * 1 2 3 27 27 H 1.09006 * 109.47568 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47007 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.47468 * 299.99949 * 3 2 1 30 30 H 1.09002 * 109.47365 * 60.00871 * 3 2 1 31 31 H 1.09007 * 109.46711 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47316 * 299.99331 * 4 2 1 33 33 H 0.96991 * 120.00234 * 180.02562 * 8 7 5 34 34 H 1.09007 * 109.46922 * 180.02562 * 13 2 1 35 35 H 1.09000 * 109.47529 * 60.00229 * 13 2 1 36 36 H 1.08000 * 120.00097 * 0.02562 * 15 14 13 37 37 H 1.08000 * 119.98263 * 359.97438 * 17 16 15 38 38 H 1.08005 * 119.86134 * 180.02562 * 18 17 16 39 39 H 0.96703 * 114.00329 * 270.23397 * 20 19 18 40 40 H 0.96700 * 114.00434 * 269.72781 * 22 21 19 41 41 H 0.96701 * 114.00360 * 89.99939 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5375 -0.0107 -2.4798 6 1 0.9169 0.8676 -2.3805 7 6 1.8709 -0.4814 -3.7321 8 7 1.4329 0.1389 -4.8058 9 14 2.9448 -2.0002 -3.9036 10 1 2.0862 -3.2109 -3.9496 11 1 3.7371 -1.9073 -5.1562 12 1 3.8649 -2.0897 -2.7413 13 6 2.0400 -0.7213 1.2491 14 7 1.5518 -0.0308 2.4454 15 6 0.7292 -0.6286 3.2478 16 6 0.2382 0.0655 4.4496 17 6 -0.6496 -0.5777 5.3181 18 6 -1.1071 0.0729 6.4417 19 6 -0.6872 1.3683 6.7214 20 8 -1.1402 2.0010 7.8349 21 6 0.1909 2.0203 5.8631 22 8 0.5956 3.2901 6.1390 23 6 0.6589 1.3737 4.7277 24 8 1.5211 2.0054 3.8900 25 1 -0.3633 0.5137 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 3.1299 -0.7208 -1.2496 32 1 1.6766 -1.7489 -1.2494 33 1 1.6671 -0.1924 -5.6868 34 1 3.1300 -0.7209 1.2493 35 1 1.6767 -1.7490 1.2491 36 1 0.4037 -1.6361 3.0353 37 1 -0.9762 -1.5853 5.1072 38 1 -1.7923 -0.4265 7.1108 39 1 -1.9560 2.5020 7.6982 40 1 0.0303 3.9751 5.7564 41 1 2.4531 1.8704 4.1096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806549892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:50 Heat of formation + Delta-G solvation = -86.631251 kcal Electronic energy + Delta-G solvation = -23311.765564 eV Core-core repulsion = 19771.708417 eV Total energy + Delta-G solvation = -3540.057147 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.61721 -38.25420 -37.60653 -36.96489 -35.89694 -34.51075 -32.23744 -30.01104 -29.46811 -27.72536 -26.49768 -26.18164 -23.62090 -22.88530 -22.17318 -20.26547 -19.16942 -18.32277 -17.92948 -17.51233 -16.81081 -16.55624 -15.89675 -15.21871 -14.96744 -14.84071 -14.16573 -14.04586 -13.98572 -13.74443 -13.19901 -12.80790 -12.71569 -12.47563 -12.22652 -12.09984 -11.84693 -11.25520 -11.08882 -11.00897 -10.95328 -10.79581 -10.51593 -10.31531 -10.20448 -9.83913 -9.70024 -9.51349 -8.97950 -8.91299 -8.81614 -8.51872 -8.36279 -6.01799 -3.98378 0.50149 0.89057 2.36230 3.30021 3.35891 3.38093 3.41051 3.62852 3.86775 4.16007 4.33578 4.46155 4.67070 4.87174 5.07863 5.29566 5.33481 5.40225 5.53055 5.61828 5.66942 5.83030 5.88553 6.03242 6.09927 6.13312 6.24039 6.33412 6.40947 6.60795 6.68490 6.78329 7.06543 7.09032 7.13406 7.17726 7.30755 7.42638 7.44478 7.74582 7.80630 7.96719 8.57632 9.03884 9.60745 11.11320 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.034522 B = 0.003097 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.884254 B = 9040.161307 C = 9331.851194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.040 4.040 3 C -0.120 4.120 4 C -0.004 4.004 5 C -0.508 4.508 6 H 0.078 0.922 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.037 3.963 14 N -0.458 5.458 15 C 0.143 3.857 16 C -0.079 4.079 17 C -0.075 4.075 18 C -0.147 4.147 19 C 0.099 3.901 20 O -0.488 6.488 21 C 0.043 3.957 22 O -0.481 6.481 23 C 0.142 3.858 24 O -0.459 6.459 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.016 0.984 32 H 0.008 0.992 33 H 0.262 0.738 34 H 0.085 0.915 35 H 0.038 0.962 36 H 0.099 0.901 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.388 0.612 40 H 0.388 0.612 41 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 0.410 24.008 24.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.040 4.040 3 C -0.178 4.178 4 C -0.042 4.042 5 C -0.546 4.546 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.092 4.092 14 N -0.165 5.165 15 C -0.067 4.067 16 C -0.080 4.080 17 C -0.095 4.095 18 C -0.165 4.165 19 C 0.053 3.947 20 O -0.298 6.298 21 C -0.003 4.003 22 O -0.291 6.291 23 C 0.093 3.907 24 O -0.269 6.269 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.027 0.973 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.116 0.884 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.244 0.756 40 H 0.243 0.757 41 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -4.208 0.853 23.809 24.193 hybrid contribution -0.110 -1.417 -0.700 1.585 sum -4.318 -0.565 23.109 23.515 Atomic orbital electron populations 1.21765 0.95335 1.00335 1.01176 1.20399 0.95276 0.96223 0.92131 1.21646 0.99617 0.95316 1.01192 1.19654 0.96087 0.95240 0.93194 1.21110 1.31581 1.13251 0.88614 0.90423 1.25014 0.95782 0.96770 0.95986 1.69903 1.46092 1.40588 0.97842 0.86844 0.81290 0.83939 0.77564 1.20479 1.21484 1.19138 1.22752 1.00502 0.95590 0.90325 1.71926 1.07440 1.34403 1.02725 1.23846 0.94873 0.95696 0.92284 1.19316 0.99991 0.92902 0.95820 1.21054 0.95530 1.00005 0.92899 1.21213 1.02407 0.94685 0.98241 1.18771 0.95996 0.92316 0.87631 1.84864 1.45890 1.68428 1.30617 1.19150 1.00415 0.87644 0.93086 1.84883 1.54787 1.12608 1.76799 1.18840 0.94545 0.89882 0.87468 1.84772 1.19011 1.71615 1.51547 0.94592 0.91165 0.94298 0.94170 0.92016 0.93142 0.96603 0.97337 0.92840 0.89705 0.94356 0.88386 0.84392 0.84578 0.75565 0.75682 0.74903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.06 37.16 0.30 -2.21 16 2 C -0.04 -0.79 0.60 -154.51 -0.09 -0.88 16 3 C -0.12 -2.40 8.06 37.16 0.30 -2.10 16 4 C 0.00 -0.09 3.11 -27.88 -0.09 -0.18 16 5 C -0.51 -14.10 8.20 -34.44 -0.28 -14.38 16 6 H 0.08 2.32 5.92 -52.49 -0.31 2.00 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 9 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 13 C 0.04 0.62 5.28 -4.04 -0.02 0.60 16 14 N -0.46 -6.82 6.85 -59.13 -0.40 -7.23 16 15 C 0.14 1.80 10.25 -14.88 -0.15 1.65 16 16 C -0.08 -0.88 5.88 -104.91 -0.62 -1.50 16 17 C -0.07 -0.64 9.77 -39.18 -0.38 -1.03 16 18 C -0.15 -1.21 9.96 -39.50 -0.39 -1.60 16 19 C 0.10 0.95 6.72 -39.00 -0.26 0.69 16 20 O -0.49 -4.12 13.26 -34.13 -0.45 -4.58 16 21 C 0.04 0.47 6.72 -39.09 -0.26 0.21 16 22 O -0.48 -5.05 13.06 -45.48 -0.59 -5.64 16 23 C 0.14 1.70 6.73 -38.64 -0.26 1.44 16 24 O -0.46 -5.95 11.14 -33.85 -0.38 -6.33 16 25 H 0.04 0.65 7.45 -51.93 -0.39 0.26 16 26 H 0.07 1.53 6.62 -51.93 -0.34 1.19 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.78 8.14 -51.92 -0.42 0.35 16 29 H 0.06 1.36 6.62 -51.93 -0.34 1.02 16 30 H 0.05 0.95 7.60 -51.93 -0.39 0.56 16 31 H 0.02 0.38 7.20 -51.92 -0.37 0.00 16 32 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 35 H 0.04 0.60 7.69 -51.93 -0.40 0.21 16 36 H 0.10 1.06 7.77 -52.49 -0.41 0.66 16 37 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 39 H 0.39 1.33 9.06 45.56 0.41 1.74 16 40 H 0.39 2.45 9.07 45.56 0.41 2.86 16 41 H 0.39 4.11 9.06 45.56 0.41 4.52 16 LS Contribution 341.78 15.07 5.15 5.15 Total: -1.00 -34.49 341.78 -6.28 -40.77 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -3.39 Total: 5.37 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -2.31 Total: -17.52 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.37 Total: -34.26 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -1.42 Total: -16.55 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.49 -6.28 -40.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806549892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.862 kcal (2) G-P(sol) polarization free energy of solvation -34.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds