Wall clock time and date at job start Tue Mar 31 2020 07:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46799 * 2 1 4 4 C 1.53002 * 109.46668 * 240.00505 * 2 1 3 5 5 C 1.50700 * 109.47344 * 59.99779 * 4 2 1 6 6 H 1.07999 * 119.99692 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99973 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00067 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00050 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47019 * 89.99647 * 9 7 5 11 11 H 1.48499 * 109.47148 * 209.99990 * 9 7 5 12 12 H 1.48508 * 109.47052 * 330.00085 * 9 7 5 13 13 C 1.52993 * 109.47173 * 120.00484 * 2 1 3 14 14 N 1.46501 * 109.47283 * 299.99433 * 13 2 1 15 15 C 1.29532 * 119.99575 * 114.99873 * 14 13 2 16 16 C 1.47204 * 119.99722 * 180.02562 * 15 14 13 17 17 C 1.39872 * 120.12166 * 180.02562 * 16 15 14 18 18 C 1.37662 * 120.02926 * 179.97438 * 17 16 15 19 19 C 1.39014 * 120.27901 * 359.78904 * 18 17 16 20 20 O 1.35851 * 119.88017 * 180.23022 * 19 18 17 21 21 C 1.39026 * 120.24101 * 0.46545 * 19 18 17 22 22 O 1.36098 * 120.01841 * 179.78393 * 21 19 18 23 23 C 1.38786 * 119.96529 * 359.51480 * 21 19 18 24 24 O 1.35806 * 120.13442 * 180.27430 * 23 21 19 25 25 H 1.09006 * 109.47016 * 299.99231 * 1 2 3 26 26 H 1.08999 * 109.47933 * 59.99780 * 1 2 3 27 27 H 1.09006 * 109.47568 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47007 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.47468 * 299.99949 * 3 2 1 30 30 H 1.09002 * 109.47365 * 60.00871 * 3 2 1 31 31 H 1.09007 * 109.46711 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47316 * 299.99331 * 4 2 1 33 33 H 0.96991 * 120.00234 * 180.02562 * 8 7 5 34 34 H 1.09007 * 109.46922 * 180.02562 * 13 2 1 35 35 H 1.09000 * 109.47529 * 60.00229 * 13 2 1 36 36 H 1.08000 * 120.00097 * 0.02562 * 15 14 13 37 37 H 1.08000 * 119.98263 * 359.97438 * 17 16 15 38 38 H 1.08005 * 119.86134 * 180.02562 * 18 17 16 39 39 H 0.96703 * 114.00329 * 270.23397 * 20 19 18 40 40 H 0.96700 * 114.00434 * 269.72781 * 22 21 19 41 41 H 0.96701 * 114.00360 * 89.99939 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5375 -0.0107 -2.4798 6 1 0.9169 0.8676 -2.3805 7 6 1.8709 -0.4814 -3.7321 8 7 1.4329 0.1389 -4.8058 9 14 2.9448 -2.0002 -3.9036 10 1 2.0862 -3.2109 -3.9496 11 1 3.7371 -1.9073 -5.1562 12 1 3.8649 -2.0897 -2.7413 13 6 2.0400 -0.7213 1.2491 14 7 1.5518 -0.0308 2.4454 15 6 0.7292 -0.6286 3.2478 16 6 0.2382 0.0655 4.4496 17 6 -0.6496 -0.5777 5.3181 18 6 -1.1071 0.0729 6.4417 19 6 -0.6872 1.3683 6.7214 20 8 -1.1402 2.0010 7.8349 21 6 0.1909 2.0203 5.8631 22 8 0.5956 3.2901 6.1390 23 6 0.6589 1.3737 4.7277 24 8 1.5211 2.0054 3.8900 25 1 -0.3633 0.5137 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 3.1299 -0.7208 -1.2496 32 1 1.6766 -1.7489 -1.2494 33 1 1.6671 -0.1924 -5.6868 34 1 3.1300 -0.7209 1.2493 35 1 1.6767 -1.7490 1.2491 36 1 0.4037 -1.6361 3.0353 37 1 -0.9762 -1.5853 5.1072 38 1 -1.7923 -0.4265 7.1108 39 1 -1.9560 2.5020 7.6982 40 1 0.0303 3.9751 5.7564 41 1 2.4531 1.8704 4.1096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806549892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:49 Heat of formation + Delta-G solvation = -114.012294 kcal Electronic energy + Delta-G solvation = -23312.952895 eV Core-core repulsion = 19771.708417 eV Total energy + Delta-G solvation = -3541.244478 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.35735 -39.34907 -38.65672 -37.80731 -36.69997 -35.76633 -34.27267 -30.99005 -30.20947 -29.59602 -28.02800 -27.50393 -24.96618 -23.84835 -23.38461 -21.25364 -19.90415 -19.53645 -19.04671 -18.88986 -18.31962 -17.41442 -16.66151 -16.38485 -15.98846 -15.88265 -15.83051 -15.48464 -15.07370 -14.84374 -14.51708 -14.17492 -14.05310 -13.77398 -13.45556 -13.17701 -12.86298 -12.82845 -12.72834 -12.55414 -12.39615 -12.26216 -11.83343 -11.76965 -11.60034 -11.35989 -11.16995 -11.05491 -10.80042 -10.71991 -9.98621 -9.55264 -9.23342 -8.23505 -6.24818 -0.27113 0.18079 1.35041 1.37479 1.48433 1.49834 2.38351 2.60451 2.93925 3.11218 3.20632 3.22823 3.59217 3.90648 4.02676 4.12765 4.19126 4.28212 4.37549 4.58552 4.63810 4.75615 4.79354 4.83051 4.89952 4.97608 5.03144 5.10476 5.23906 5.27777 5.31553 5.36529 5.38146 5.45833 5.59434 5.64884 5.67314 5.76740 6.37579 6.56956 6.81677 6.83394 6.96540 7.00157 7.37633 8.92976 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.034522 B = 0.003097 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.884254 B = 9040.161307 C = 9331.851194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.041 4.041 3 C -0.108 4.108 4 C -0.001 4.001 5 C -0.507 4.507 6 H 0.040 0.960 7 C 0.000 4.000 8 N -0.955 5.955 9 Si 0.944 3.056 10 H -0.268 1.268 11 H -0.289 1.289 12 H -0.248 1.248 13 C 0.049 3.951 14 N -0.490 5.490 15 C 0.160 3.840 16 C -0.102 4.102 17 C -0.060 4.060 18 C -0.143 4.143 19 C 0.104 3.896 20 O -0.499 6.499 21 C 0.025 3.975 22 O -0.496 6.496 23 C 0.124 3.876 24 O -0.478 6.478 25 H 0.048 0.952 26 H 0.034 0.966 27 H 0.049 0.951 28 H 0.041 0.959 29 H 0.026 0.974 30 H 0.059 0.941 31 H 0.016 0.984 32 H 0.017 0.983 33 H 0.263 0.737 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.122 0.878 37 H 0.169 0.831 38 H 0.164 0.836 39 H 0.411 0.589 40 H 0.402 0.598 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.597 -1.868 26.780 27.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.041 4.041 3 C -0.166 4.166 4 C -0.039 4.039 5 C -0.545 4.545 6 H 0.058 0.942 7 C -0.195 4.195 8 N -0.597 5.597 9 Si 0.768 3.232 10 H -0.193 1.193 11 H -0.215 1.215 12 H -0.171 1.171 13 C -0.081 4.081 14 N -0.198 5.198 15 C -0.049 4.049 16 C -0.103 4.103 17 C -0.080 4.080 18 C -0.161 4.161 19 C 0.058 3.942 20 O -0.312 6.312 21 C -0.021 4.021 22 O -0.308 6.308 23 C 0.076 3.924 24 O -0.289 6.289 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.139 0.861 37 H 0.187 0.813 38 H 0.182 0.818 39 H 0.270 0.730 40 H 0.259 0.741 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -4.591 -1.409 26.608 27.038 hybrid contribution -0.158 -0.580 -1.381 1.506 sum -4.749 -1.989 25.227 25.747 Atomic orbital electron populations 1.21619 0.95251 1.00585 1.00003 1.20306 0.95334 0.95800 0.92702 1.21500 0.99561 0.95666 0.99826 1.19595 0.95923 0.95396 0.92969 1.21393 1.30351 1.12136 0.90599 0.94210 1.25957 0.97549 1.00407 0.95608 1.70067 1.48249 1.42882 0.98508 0.85749 0.79639 0.79756 0.78031 1.19293 1.21475 1.17111 1.22451 1.00509 0.95580 0.89521 1.71990 1.09990 1.34705 1.03079 1.24281 0.92617 0.96411 0.91607 1.19406 1.01640 0.92947 0.96311 1.21392 0.93738 1.00962 0.91880 1.21521 1.02255 0.93978 0.98377 1.18931 0.95297 0.92858 0.87145 1.84800 1.47384 1.68826 1.30205 1.19298 1.01307 0.87913 0.93534 1.84834 1.55775 1.13112 1.77075 1.19096 0.94805 0.90580 0.87940 1.84737 1.19675 1.72150 1.52329 0.93271 0.94674 0.93238 0.93971 0.95456 0.92178 0.96523 0.96502 0.92813 0.89816 0.93191 0.86099 0.81320 0.81804 0.72971 0.74067 0.74347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.55 8.06 71.98 0.58 -3.97 16 2 C -0.04 -1.61 0.60 -52.18 -0.03 -1.64 16 3 C -0.11 -4.41 8.06 71.98 0.58 -3.83 16 4 C 0.00 -0.05 3.11 29.85 0.09 0.05 16 5 C -0.51 -28.92 8.20 25.60 0.21 -28.71 16 6 H 0.04 2.52 5.92 -2.91 -0.02 2.50 16 7 C 0.00 0.03 5.47 84.66 0.46 0.49 16 8 N -0.96 -60.62 13.96 21.45 0.30 -60.32 16 9 Si 0.94 44.59 27.47 68.60 1.88 46.48 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 13 C 0.05 1.53 5.28 86.38 0.46 1.98 16 14 N -0.49 -13.76 6.85 -340.98 -2.33 -16.09 16 15 C 0.16 3.59 10.25 87.39 0.90 4.49 16 16 C -0.10 -2.03 5.88 -20.05 -0.12 -2.15 16 17 C -0.06 -0.80 9.77 22.53 0.22 -0.58 16 18 C -0.14 -1.81 9.96 22.32 0.22 -1.59 16 19 C 0.10 1.74 6.72 22.65 0.15 1.89 16 20 O -0.50 -7.12 13.26 -77.67 -1.03 -8.15 16 21 C 0.03 0.52 6.72 22.59 0.15 0.68 16 22 O -0.50 -10.11 13.06 -70.34 -0.92 -11.02 16 23 C 0.12 2.84 6.73 22.88 0.15 2.99 16 24 O -0.48 -12.32 11.14 -77.30 -0.86 -13.18 16 25 H 0.05 1.75 7.45 -2.38 -0.02 1.73 16 26 H 0.03 1.57 6.62 -2.39 -0.02 1.56 16 27 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.03 1.25 6.62 -2.39 -0.02 1.24 16 30 H 0.06 2.30 7.60 -2.39 -0.02 2.29 16 31 H 0.02 0.77 7.20 -2.38 -0.02 0.75 16 32 H 0.02 0.75 7.57 -2.39 -0.02 0.74 16 33 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 34 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 35 H 0.05 1.42 7.69 -2.39 -0.02 1.41 16 36 H 0.12 2.12 7.77 -2.91 -0.02 2.10 16 37 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 39 H 0.41 1.69 9.06 -74.06 -0.67 1.02 16 40 H 0.40 4.92 9.07 -74.06 -0.67 4.25 16 41 H 0.40 8.47 9.06 -74.06 -0.67 7.80 16 Total: -1.00 -76.19 341.78 0.08 -76.10 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -0.99 Total: 16.10 kcal Atomic # 6 Polarization: -33.93 SS G_CDS: 4.03 Total: -29.90 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -2.04 Total: -76.42 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -2.81 Total: -32.36 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.48 kcal Total: -76.19 0.08 -76.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806549892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.908 kcal (2) G-P(sol) polarization free energy of solvation -76.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds