Wall clock time and date at job start Tue Mar 31 2020 07:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46943 * 2 1 4 4 C 1.52997 * 109.47190 * 240.00040 * 2 1 3 5 5 C 1.50703 * 109.47406 * 58.19967 * 4 2 1 6 6 H 1.08004 * 119.99716 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00393 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99879 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00117 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47162 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47239 * 120.00027 * 9 7 5 12 12 H 1.48507 * 109.46970 * 240.00029 * 9 7 5 13 13 C 1.52994 * 109.47053 * 120.00010 * 2 1 3 14 14 N 1.46501 * 109.47130 * 297.14303 * 13 2 1 15 15 C 1.29528 * 119.99981 * 145.43856 * 14 13 2 16 16 C 1.47205 * 120.00316 * 37.16013 * 15 14 13 17 17 C 1.39871 * 120.11958 * 3.70299 * 16 15 14 18 18 C 1.37660 * 120.02696 * 180.02562 * 17 16 15 19 19 C 1.39013 * 120.27935 * 359.97438 * 18 17 16 20 20 O 1.35861 * 119.88175 * 179.97438 * 19 18 17 21 21 C 1.39028 * 120.24322 * 0.02562 * 19 18 17 22 22 O 1.36104 * 120.01785 * 179.97438 * 21 19 18 23 23 C 1.38777 * 119.96382 * 0.25423 * 21 19 18 24 24 O 1.35813 * 120.13758 * 179.75254 * 23 21 19 25 25 H 1.09002 * 109.47093 * 303.57536 * 1 2 3 26 26 H 1.08994 * 109.47213 * 63.57439 * 1 2 3 27 27 H 1.08999 * 109.47320 * 183.57234 * 1 2 3 28 28 H 1.08997 * 109.47105 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47057 * 299.99861 * 3 2 1 30 30 H 1.08998 * 109.47406 * 60.00154 * 3 2 1 31 31 H 1.08998 * 109.47523 * 178.20143 * 4 2 1 32 32 H 1.09008 * 109.47331 * 298.20514 * 4 2 1 33 33 H 0.96996 * 120.00112 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47259 * 177.14592 * 13 2 1 35 35 H 1.09003 * 109.47565 * 57.14052 * 13 2 1 36 36 H 1.08005 * 119.99625 * 217.16888 * 15 14 13 37 37 H 1.07994 * 119.98258 * 0.03906 * 17 16 15 38 38 H 1.08002 * 119.86225 * 180.02562 * 18 17 16 39 39 H 0.96701 * 113.99442 * 270.02366 * 20 19 18 40 40 H 0.96706 * 113.99474 * 89.99992 * 22 21 19 41 41 H 0.96690 * 114.00813 * 94.76364 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5016 -0.0371 -2.4793 6 1 0.8602 0.8261 -2.3800 7 6 1.8287 -0.5124 -3.7315 8 7 2.6103 -1.5633 -3.8525 9 14 1.1619 0.3361 -5.2562 10 1 0.3136 1.4859 -4.8518 11 1 2.2928 0.8237 -6.0859 12 1 0.3496 -0.6265 -6.0431 13 6 2.0400 -0.7212 1.2492 14 7 1.6087 0.0080 2.4444 15 6 1.3069 -0.6399 3.5246 16 6 2.0760 -1.8361 3.9047 17 6 3.1813 -2.2309 3.1439 18 6 3.8989 -3.3502 3.5007 19 6 3.5306 -4.0926 4.6168 20 8 4.2442 -5.1961 4.9613 21 6 2.4339 -3.7105 5.3812 22 8 2.0770 -4.4410 6.4727 23 6 1.6998 -2.5872 5.0272 24 8 0.6249 -2.2137 5.7685 25 1 -0.3633 0.5683 0.8562 26 1 -0.3633 0.4573 -0.9202 27 1 -0.3634 -1.0256 0.0640 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1296 -0.6934 -1.2655 32 1 1.7032 -1.7578 -1.2333 33 1 2.8407 -1.8975 -4.7334 34 1 3.1288 -0.7658 1.2240 35 1 1.6354 -1.7331 1.2753 36 1 0.4908 -0.3025 4.1464 37 1 3.4720 -1.6572 2.2763 38 1 4.7522 -3.6523 2.9116 39 1 3.9245 -6.0136 4.5557 40 1 2.4998 -4.1538 7.2936 41 1 0.8234 -1.5493 6.4423 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806549893.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:52 Heat of formation + Delta-G solvation = -73.892901 kcal Electronic energy + Delta-G solvation = -23348.368400 eV Core-core repulsion = 19808.863630 eV Total energy + Delta-G solvation = -3539.504770 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.76915 -38.38393 -37.93609 -36.88256 -36.06224 -34.43457 -32.27589 -29.84900 -29.17786 -27.28109 -26.61417 -26.25497 -23.74831 -22.95855 -22.58895 -20.30031 -19.38961 -18.14587 -17.90684 -17.73696 -16.92447 -16.24416 -15.77314 -15.50501 -14.83590 -14.77682 -14.55587 -14.28496 -14.11184 -13.44786 -13.13829 -12.67881 -12.52724 -12.44751 -12.13834 -12.00941 -11.93147 -11.23849 -11.13612 -10.90646 -10.76111 -10.68293 -10.50962 -10.35636 -10.26931 -10.11787 -9.64763 -9.16918 -8.97764 -8.90129 -8.81086 -8.33847 -8.13126 -5.98411 -3.98301 0.38564 0.85794 2.10826 3.25118 3.31900 3.39831 3.43699 3.53941 3.82197 4.13843 4.47130 4.53824 4.70302 4.78923 5.00091 5.30639 5.37879 5.39703 5.57617 5.61551 5.79586 5.82030 5.91895 6.00736 6.18721 6.24028 6.33618 6.35717 6.58337 6.69082 6.81718 6.83911 7.04691 7.21302 7.24748 7.26438 7.30296 7.52050 7.66004 7.79874 7.95810 8.02453 8.46130 9.06751 9.64694 11.13398 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023474 B = 0.003388 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.499987 B = 8263.329596 C = 9014.208890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.048 4.048 3 C -0.119 4.119 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.052 3.948 14 N -0.505 5.505 15 C 0.173 3.827 16 C -0.131 4.131 17 C -0.094 4.094 18 C -0.138 4.138 19 C 0.105 3.895 20 O -0.492 6.492 21 C 0.048 3.952 22 O -0.481 6.481 23 C 0.123 3.877 24 O -0.479 6.479 25 H 0.039 0.961 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.014 0.986 32 H 0.014 0.986 33 H 0.258 0.742 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.140 0.860 39 H 0.396 0.604 40 H 0.386 0.614 41 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.975 -3.260 21.013 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.049 4.049 3 C -0.177 4.177 4 C -0.005 4.005 5 C -0.544 4.544 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.075 4.075 14 N -0.212 5.212 15 C -0.036 4.036 16 C -0.134 4.134 17 C -0.113 4.113 18 C -0.156 4.156 19 C 0.059 3.941 20 O -0.303 6.303 21 C 0.002 3.998 22 O -0.290 6.290 23 C 0.074 3.926 24 O -0.290 6.290 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.176 0.824 37 H 0.173 0.827 38 H 0.158 0.842 39 H 0.253 0.747 40 H 0.242 0.758 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 0.785 -2.775 19.956 20.163 hybrid contribution 0.363 -0.410 -0.313 0.631 sum 1.148 -3.185 19.643 19.933 Atomic orbital electron populations 1.21704 0.95354 1.00102 1.00919 1.20602 0.95542 0.95876 0.92832 1.21624 0.99338 0.96084 1.00629 1.19161 0.96033 0.95143 0.90135 1.21253 1.29378 1.13302 0.90469 0.92108 1.25009 0.95364 0.95125 0.99076 1.69971 1.36593 1.23967 1.23232 0.86593 0.78772 0.79607 0.83396 1.19721 1.21155 1.21141 1.22829 0.99214 0.95968 0.89508 1.71484 1.16110 1.33042 1.00561 1.24601 0.93738 0.87081 0.98168 1.20712 0.97662 0.98076 0.96988 1.22114 0.93587 0.95916 0.99688 1.21406 1.01440 0.96586 0.96174 1.18830 0.90183 0.90743 0.94375 1.84721 1.55760 1.16803 1.73004 1.18998 0.93667 0.94514 0.92617 1.84901 1.70278 1.56842 1.16959 1.18727 0.88080 0.92511 0.93241 1.84857 1.30220 1.62881 1.50993 0.94222 0.91790 0.94465 0.94508 0.92332 0.93664 0.96733 0.96768 0.93198 0.91412 0.91963 0.82427 0.82748 0.84221 0.74719 0.75829 0.75330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.09 37.16 0.30 -2.14 16 2 C -0.05 -0.98 0.60 -154.51 -0.09 -1.07 16 3 C -0.12 -2.36 8.06 37.16 0.30 -2.06 16 4 C 0.03 0.82 4.04 -27.88 -0.11 0.71 16 5 C -0.51 -13.81 7.61 -34.44 -0.26 -14.07 16 6 H 0.06 1.63 5.68 -52.48 -0.30 1.33 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 13 C 0.05 0.90 3.22 -4.04 -0.01 0.89 16 14 N -0.51 -7.85 9.04 -59.13 -0.53 -8.38 16 15 C 0.17 2.19 10.62 -14.88 -0.16 2.03 16 16 C -0.13 -1.60 5.66 -104.90 -0.59 -2.19 16 17 C -0.09 -1.18 8.39 -39.18 -0.33 -1.51 16 18 C -0.14 -1.57 9.96 -39.51 -0.39 -1.96 16 19 C 0.11 1.16 6.72 -39.00 -0.26 0.90 16 20 O -0.49 -4.79 13.26 -34.16 -0.45 -5.24 16 21 C 0.05 0.53 6.72 -39.09 -0.26 0.27 16 22 O -0.48 -4.76 13.06 -45.50 -0.59 -5.35 16 23 C 0.12 1.36 6.73 -38.64 -0.26 1.10 16 24 O -0.48 -4.44 12.46 -33.87 -0.42 -4.87 16 25 H 0.04 0.71 7.79 -51.93 -0.40 0.31 16 26 H 0.06 1.35 6.39 -51.93 -0.33 1.02 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 1.23 6.73 -51.93 -0.35 0.88 16 30 H 0.04 0.82 7.53 -51.93 -0.39 0.43 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.01 0.38 8.14 -51.92 -0.42 -0.05 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.07 1.15 5.98 -51.93 -0.31 0.84 16 35 H 0.06 1.10 7.16 -51.93 -0.37 0.72 16 36 H 0.16 1.59 7.64 -52.48 -0.40 1.19 16 37 H 0.16 2.09 4.01 -52.49 -0.21 1.88 16 38 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.40 2.32 9.06 45.56 0.41 2.74 16 40 H 0.39 2.04 9.07 45.56 0.41 2.45 16 41 H 0.39 1.56 9.06 45.56 0.41 1.98 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -34.15 338.87 -6.50 -40.64 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -3.08 Total: 5.12 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -2.24 Total: -17.66 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.20 Total: -34.28 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -1.47 Total: -15.46 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.15 -6.50 -40.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806549893.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.249 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds