Wall clock time and date at job start Tue Mar 31 2020 07:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46943 * 2 1 4 4 C 1.52997 * 109.47190 * 240.00040 * 2 1 3 5 5 C 1.50703 * 109.47406 * 58.19967 * 4 2 1 6 6 H 1.08004 * 119.99716 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00393 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99879 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00117 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47162 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47239 * 120.00027 * 9 7 5 12 12 H 1.48507 * 109.46970 * 240.00029 * 9 7 5 13 13 C 1.52994 * 109.47053 * 120.00010 * 2 1 3 14 14 N 1.46501 * 109.47130 * 297.14303 * 13 2 1 15 15 C 1.29528 * 119.99981 * 145.43856 * 14 13 2 16 16 C 1.47205 * 120.00316 * 37.16013 * 15 14 13 17 17 C 1.39871 * 120.11958 * 3.70299 * 16 15 14 18 18 C 1.37660 * 120.02696 * 180.02562 * 17 16 15 19 19 C 1.39013 * 120.27935 * 359.97438 * 18 17 16 20 20 O 1.35861 * 119.88175 * 179.97438 * 19 18 17 21 21 C 1.39028 * 120.24322 * 0.02562 * 19 18 17 22 22 O 1.36104 * 120.01785 * 179.97438 * 21 19 18 23 23 C 1.38777 * 119.96382 * 0.25423 * 21 19 18 24 24 O 1.35813 * 120.13758 * 179.75254 * 23 21 19 25 25 H 1.09002 * 109.47093 * 303.57536 * 1 2 3 26 26 H 1.08994 * 109.47213 * 63.57439 * 1 2 3 27 27 H 1.08999 * 109.47320 * 183.57234 * 1 2 3 28 28 H 1.08997 * 109.47105 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47057 * 299.99861 * 3 2 1 30 30 H 1.08998 * 109.47406 * 60.00154 * 3 2 1 31 31 H 1.08998 * 109.47523 * 178.20143 * 4 2 1 32 32 H 1.09008 * 109.47331 * 298.20514 * 4 2 1 33 33 H 0.96996 * 120.00112 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47259 * 177.14592 * 13 2 1 35 35 H 1.09003 * 109.47565 * 57.14052 * 13 2 1 36 36 H 1.08005 * 119.99625 * 217.16888 * 15 14 13 37 37 H 1.07994 * 119.98258 * 0.03906 * 17 16 15 38 38 H 1.08002 * 119.86225 * 180.02562 * 18 17 16 39 39 H 0.96701 * 113.99442 * 270.02366 * 20 19 18 40 40 H 0.96706 * 113.99474 * 89.99992 * 22 21 19 41 41 H 0.96690 * 114.00813 * 94.76364 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5016 -0.0371 -2.4793 6 1 0.8602 0.8261 -2.3800 7 6 1.8287 -0.5124 -3.7315 8 7 2.6103 -1.5633 -3.8525 9 14 1.1619 0.3361 -5.2562 10 1 0.3136 1.4859 -4.8518 11 1 2.2928 0.8237 -6.0859 12 1 0.3496 -0.6265 -6.0431 13 6 2.0400 -0.7212 1.2492 14 7 1.6087 0.0080 2.4444 15 6 1.3069 -0.6399 3.5246 16 6 2.0760 -1.8361 3.9047 17 6 3.1813 -2.2309 3.1439 18 6 3.8989 -3.3502 3.5007 19 6 3.5306 -4.0926 4.6168 20 8 4.2442 -5.1961 4.9613 21 6 2.4339 -3.7105 5.3812 22 8 2.0770 -4.4410 6.4727 23 6 1.6998 -2.5872 5.0272 24 8 0.6249 -2.2137 5.7685 25 1 -0.3633 0.5683 0.8562 26 1 -0.3633 0.4573 -0.9202 27 1 -0.3634 -1.0256 0.0640 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1296 -0.6934 -1.2655 32 1 1.7032 -1.7578 -1.2333 33 1 2.8407 -1.8975 -4.7334 34 1 3.1288 -0.7658 1.2240 35 1 1.6354 -1.7331 1.2753 36 1 0.4908 -0.3025 4.1464 37 1 3.4720 -1.6572 2.2763 38 1 4.7522 -3.6523 2.9116 39 1 3.9245 -6.0136 4.5557 40 1 2.4998 -4.1538 7.2936 41 1 0.8234 -1.5493 6.4423 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806549893.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:51 Heat of formation + Delta-G solvation = -101.232036 kcal Electronic energy + Delta-G solvation = -23349.553914 eV Core-core repulsion = 19808.863630 eV Total energy + Delta-G solvation = -3540.690284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.61135 -39.48610 -38.85615 -37.86590 -37.06834 -35.63187 -34.28646 -30.79580 -30.11698 -29.08051 -28.06719 -27.85633 -25.36720 -24.02761 -23.71577 -21.33674 -20.33517 -19.36679 -18.97254 -18.50075 -18.31793 -17.81043 -16.76218 -16.63582 -16.31278 -15.78958 -15.69356 -15.60541 -15.21456 -14.76801 -14.42149 -14.27778 -14.03330 -13.74661 -13.47229 -13.14610 -12.90785 -12.82903 -12.67495 -12.58497 -12.33428 -12.26467 -12.04774 -11.89280 -11.66622 -11.31141 -11.15895 -10.95793 -10.82861 -10.51573 -9.95539 -9.73821 -9.19220 -8.14996 -6.21628 -0.52451 0.02203 1.13710 1.39957 1.41215 1.53397 2.37996 2.44035 2.75687 3.11356 3.19196 3.35790 3.57218 3.64661 3.85699 4.02052 4.13318 4.18827 4.39963 4.55539 4.64039 4.64928 4.74793 4.85107 4.92858 4.95728 5.07631 5.10235 5.17093 5.21282 5.38263 5.44808 5.48673 5.51186 5.54914 5.69120 5.83532 5.90823 6.33276 6.51393 6.67415 6.87148 6.90376 6.93814 7.45580 8.97562 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023474 B = 0.003388 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.499987 B = 8263.329596 C = 9014.208890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.048 4.048 3 C -0.109 4.109 4 C 0.041 3.959 5 C -0.514 4.514 6 H 0.065 0.935 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.956 3.044 10 H -0.262 1.262 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.069 3.931 14 N -0.538 5.538 15 C 0.199 3.801 16 C -0.151 4.151 17 C -0.103 4.103 18 C -0.148 4.148 19 C 0.112 3.888 20 O -0.497 6.497 21 C 0.044 3.956 22 O -0.488 6.488 23 C 0.139 3.861 24 O -0.485 6.485 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.032 0.968 28 H 0.030 0.970 29 H 0.042 0.958 30 H 0.064 0.936 31 H -0.012 1.012 32 H -0.014 1.014 33 H 0.260 0.740 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.190 0.810 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.413 0.587 40 H 0.407 0.593 41 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.091 -2.867 22.901 23.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.048 4.048 3 C -0.166 4.166 4 C 0.003 3.997 5 C -0.552 4.552 6 H 0.083 0.917 7 C -0.199 4.199 8 N -0.578 5.578 9 Si 0.781 3.219 10 H -0.186 1.186 11 H -0.208 1.208 12 H -0.207 1.207 13 C -0.059 4.059 14 N -0.246 5.246 15 C -0.009 4.009 16 C -0.154 4.154 17 C -0.123 4.123 18 C -0.167 4.167 19 C 0.065 3.935 20 O -0.311 6.311 21 C -0.002 4.002 22 O -0.300 6.300 23 C 0.090 3.910 24 O -0.299 6.299 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.006 0.994 32 H 0.005 0.995 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.207 0.793 37 H 0.157 0.843 38 H 0.164 0.836 39 H 0.273 0.727 40 H 0.265 0.735 41 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -0.284 -2.369 21.888 22.017 hybrid contribution 0.700 -0.665 -0.685 1.184 sum 0.416 -3.035 21.203 21.423 Atomic orbital electron populations 1.21589 0.94634 0.99984 1.00889 1.20460 0.96055 0.95984 0.92342 1.21508 0.98923 0.95527 1.00666 1.19009 0.94237 0.94060 0.92357 1.21620 1.28953 1.13260 0.91415 0.91688 1.25887 0.95731 0.95826 1.02458 1.70103 1.38071 1.25568 1.24011 0.85532 0.78226 0.78756 0.79379 1.18576 1.20757 1.20747 1.22389 0.98749 0.95048 0.89711 1.71428 1.19038 1.33046 1.01078 1.25114 0.92382 0.86319 0.97044 1.20695 0.97974 0.98867 0.97866 1.22040 0.94383 0.96376 0.99502 1.21489 1.01867 0.96505 0.96793 1.18874 0.89976 0.90876 0.93793 1.84672 1.55884 1.17319 1.73192 1.19029 0.93575 0.94506 0.93126 1.84853 1.70660 1.56887 1.17644 1.18631 0.87717 0.91988 0.92668 1.84794 1.29540 1.63909 1.51620 0.92008 0.93538 0.94906 0.95048 0.93920 0.91730 0.99383 0.99523 0.93120 0.92023 0.92913 0.79314 0.84303 0.83559 0.72679 0.73451 0.72356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.47 8.09 71.98 0.58 -3.89 16 2 C -0.05 -1.98 0.60 -52.18 -0.03 -2.02 16 3 C -0.11 -4.31 8.06 71.98 0.58 -3.73 16 4 C 0.04 2.14 4.04 29.85 0.12 2.26 16 5 C -0.51 -28.73 7.61 25.60 0.19 -28.53 16 6 H 0.07 3.51 5.68 -2.91 -0.02 3.50 16 7 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 8 N -0.94 -57.06 13.29 21.45 0.28 -56.78 16 9 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 10 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 C 0.07 2.43 3.22 86.38 0.28 2.71 16 14 N -0.54 -16.10 9.04 -340.98 -3.08 -19.18 16 15 C 0.20 4.62 10.62 87.39 0.93 5.54 16 16 C -0.15 -3.45 5.66 -20.05 -0.11 -3.56 16 17 C -0.10 -2.60 8.39 22.53 0.19 -2.41 16 18 C -0.15 -3.31 9.96 22.32 0.22 -3.09 16 19 C 0.11 2.30 6.72 22.65 0.15 2.45 16 20 O -0.50 -8.79 13.26 -77.78 -1.03 -9.82 16 21 C 0.04 0.87 6.72 22.59 0.15 1.02 16 22 O -0.49 -8.31 13.06 -70.41 -0.92 -9.23 16 23 C 0.14 2.72 6.73 22.88 0.15 2.88 16 24 O -0.48 -7.31 12.46 -77.38 -0.96 -8.27 16 25 H 0.06 2.13 7.79 -2.39 -0.02 2.12 16 26 H 0.05 1.95 6.39 -2.39 -0.02 1.94 16 27 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 28 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 1.78 6.73 -2.39 -0.02 1.77 16 30 H 0.06 2.29 7.53 -2.39 -0.02 2.27 16 31 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 32 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 33 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.06 2.20 5.98 -2.39 -0.01 2.18 16 35 H 0.05 1.91 7.16 -2.39 -0.02 1.89 16 36 H 0.19 3.10 7.64 -2.91 -0.02 3.08 16 37 H 0.14 3.92 4.01 -2.91 -0.01 3.91 16 38 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 39 H 0.41 4.10 9.06 -74.06 -0.67 3.43 16 40 H 0.41 3.08 9.07 -74.05 -0.67 2.41 16 41 H 0.42 1.68 9.06 -74.06 -0.67 1.01 16 Total: -1.00 -73.73 338.87 -0.73 -74.46 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -0.91 Total: 12.18 kcal Atomic # 6 Polarization: -33.90 SS G_CDS: 3.87 Total: -30.03 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -2.80 Total: -75.96 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -2.92 Total: -27.33 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -73.73 -0.73 -74.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806549893.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.775 kcal (2) G-P(sol) polarization free energy of solvation -73.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds