Wall clock time and date at job start Tue Mar 31 2020 06:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30170 * 126.80112 * 2 1 4 4 O 1.20918 * 111.60383 * 179.97438 * 3 2 1 5 5 C 1.34040 * 111.56949 * 359.75618 * 4 3 2 6 6 C 1.50698 * 126.78362 * 180.29408 * 5 4 3 7 7 C 1.35449 * 106.44167 * 0.38384 * 5 4 3 8 8 C 1.50707 * 128.00555 * 179.90935 * 7 5 4 9 9 H 1.09005 * 109.47192 * 179.68354 * 8 7 5 10 10 C 1.53003 * 109.47286 * 299.68046 * 8 7 5 11 11 C 1.50697 * 109.47057 * 59.68247 * 8 7 5 12 12 O 1.20827 * 120.00081 * 0.02562 * 11 8 7 13 13 O 1.34235 * 119.99887 * 179.97438 * 11 8 7 14 14 C 1.45195 * 116.99676 * 177.77470 * 13 11 8 15 15 C 1.50703 * 112.84923 * 65.18084 * 14 13 11 16 16 H 1.08002 * 119.99621 * 242.61035 * 15 14 13 17 17 C 1.37880 * 120.00434 * 62.60880 * 15 14 13 18 18 N 1.31516 * 119.99401 * 353.75594 * 17 15 14 19 19 Si 1.86793 * 120.00161 * 173.75749 * 17 15 14 20 20 H 1.48504 * 109.47252 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47070 * 119.99889 * 19 17 15 22 22 H 1.48501 * 109.47031 * 239.99930 * 19 17 15 23 23 C 1.53784 * 113.61923 * 293.97792 * 14 13 11 24 24 C 1.53946 * 87.02102 * 220.05096 * 23 14 13 25 25 C 1.53777 * 87.11475 * 25.36180 * 24 23 14 26 26 H 1.09004 * 109.46590 * 270.02514 * 1 2 3 27 27 H 1.09004 * 109.47127 * 30.02076 * 1 2 3 28 28 H 1.08990 * 109.47219 * 150.02514 * 1 2 3 29 29 H 1.09003 * 109.47071 * 270.11337 * 6 5 4 30 30 H 1.09002 * 109.46888 * 30.10953 * 6 5 4 31 31 H 1.09001 * 109.47717 * 150.11143 * 6 5 4 32 32 H 1.08995 * 109.46904 * 180.02562 * 10 8 7 33 33 H 1.09005 * 109.46834 * 300.00078 * 10 8 7 34 34 H 1.08995 * 109.46838 * 60.00049 * 10 8 7 35 35 H 0.97001 * 119.99179 * 185.01184 * 18 17 15 36 36 H 1.09002 * 113.60774 * 334.57321 * 23 14 13 37 37 H 1.08998 * 113.60842 * 105.47293 * 23 14 13 38 38 H 1.09003 * 113.54085 * 270.81002 * 24 23 14 39 39 H 1.08998 * 113.74496 * 139.94683 * 24 23 14 40 40 H 1.09002 * 113.61918 * 220.08994 * 25 24 23 41 41 H 1.08998 * 113.69218 * 89.19563 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 0.0005 5 6 3.6025 -0.6068 0.0062 6 6 4.9021 -1.3696 0.0148 7 6 2.3540 -1.1320 0.0008 8 6 1.9591 -2.5864 0.0018 9 1 0.8721 -2.6678 0.0019 10 6 2.5214 -3.2685 -1.2470 11 6 2.5131 -3.2564 1.2327 12 8 3.1617 -2.6183 2.0278 13 8 2.2852 -4.5619 1.4463 14 6 2.8908 -5.1522 2.6266 15 6 2.3430 -4.5854 3.9111 16 1 2.9951 -4.0537 4.5881 17 6 1.0092 -4.7457 4.2219 18 7 0.1898 -5.2835 3.3450 19 14 0.3663 -4.1988 5.8882 20 1 1.4816 -3.6298 6.6868 21 1 -0.6844 -3.1666 5.6989 22 1 -0.2094 -5.3656 6.6039 23 6 4.4273 -5.1916 2.5765 24 6 4.3321 -6.5901 3.2129 25 6 2.9264 -6.6894 2.5974 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8901 -0.5134 29 1 5.2210 -1.5557 -1.0108 30 1 5.6632 -0.7848 0.5314 31 1 4.7623 -2.3200 0.5299 32 1 2.2353 -4.3203 -1.2464 33 1 2.1206 -2.7838 -2.1373 34 1 3.6083 -3.1872 -1.2471 35 1 -0.7604 -5.3300 3.5342 36 1 4.8310 -5.1991 1.5640 37 1 4.9041 -4.4505 3.2180 38 1 4.3313 -6.5733 4.3028 39 1 5.0408 -7.3088 2.8013 40 1 2.1934 -7.1557 3.2556 41 1 2.9176 -7.1072 1.5907 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810860764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:12 Heat of formation + Delta-G solvation = -13.413113 kcal Electronic energy + Delta-G solvation = -25044.851701 eV Core-core repulsion = 21507.969531 eV Total energy + Delta-G solvation = -3536.882170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.64120 -39.48914 -37.46181 -35.32088 -34.18828 -33.57793 -32.32863 -31.38100 -28.46020 -27.55999 -26.25539 -24.67404 -24.60298 -23.25799 -21.77440 -20.28254 -19.11120 -18.57171 -17.41126 -17.01180 -16.58657 -15.69265 -15.22207 -14.94982 -14.61818 -14.27566 -13.83492 -13.54518 -13.34870 -13.18009 -12.91674 -12.89305 -12.57159 -12.33962 -12.13556 -12.12082 -11.77096 -11.62843 -11.13164 -11.09688 -11.01221 -10.90995 -10.63237 -10.44401 -10.29140 -9.92376 -9.85447 -9.61894 -9.24252 -8.85278 -8.80466 -8.57486 -8.52820 -6.15008 -4.26188 1.75268 2.43079 3.21634 3.30757 3.36266 3.36587 3.45930 4.02051 4.32375 4.39508 4.71564 4.99157 5.11112 5.19157 5.38294 5.46048 5.54442 5.57723 5.62954 5.67465 5.71466 5.74037 5.77388 5.88230 5.96664 6.01745 6.10250 6.18456 6.22658 6.27410 6.38247 6.44382 6.54327 6.58911 6.86639 7.06323 7.25416 7.51122 7.75847 7.91708 8.32015 8.53993 8.77992 9.19846 9.44243 10.89297 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015748 B = 0.006287 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.603193 B = 4452.777044 C = 5270.307017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.030 3.970 3 N -0.375 5.375 4 O 0.089 5.911 5 C 0.001 3.999 6 C -0.076 4.076 7 C -0.182 4.182 8 C -0.012 4.012 9 H 0.110 0.890 10 C -0.139 4.139 11 C 0.467 3.533 12 O -0.504 6.504 13 O -0.340 6.340 14 C 0.242 3.758 15 C -0.512 4.512 16 H 0.068 0.932 17 C 0.076 3.924 18 N -0.861 5.861 19 Si 0.890 3.110 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.281 1.281 23 C -0.158 4.158 24 C -0.132 4.132 25 C -0.109 4.109 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.262 0.738 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.151 2.909 -9.371 10.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.129 4.129 3 N -0.083 5.083 4 O 0.026 5.974 5 C -0.063 4.063 6 C -0.133 4.133 7 C -0.187 4.187 8 C -0.032 4.032 9 H 0.128 0.872 10 C -0.196 4.196 11 C 0.308 3.692 12 O -0.393 6.393 13 O -0.256 6.256 14 C 0.208 3.792 15 C -0.549 4.549 16 H 0.086 0.914 17 C -0.130 4.130 18 N -0.497 5.497 19 Si 0.718 3.282 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.207 1.207 23 C -0.196 4.196 24 C -0.170 4.170 25 C -0.146 4.146 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.979 4.250 -9.105 10.807 hybrid contribution -0.681 -0.338 1.083 1.324 sum 3.297 3.912 -8.022 9.514 Atomic orbital electron populations 1.20174 0.86193 1.03377 1.03635 1.23341 0.98730 0.88508 1.02349 1.73764 0.89304 1.23868 1.21389 1.84730 1.21606 1.22710 1.68337 1.24066 0.98233 0.83196 1.00785 1.20470 0.90007 0.99853 1.02955 1.20345 0.91901 0.95847 1.10558 1.19176 1.02611 0.87536 0.93913 0.87238 1.21760 1.01214 1.01414 0.95190 1.22565 0.78160 0.82561 0.85884 1.90559 1.37818 1.65390 1.45504 1.86478 1.69056 1.22379 1.47681 1.21170 0.86114 0.89507 0.82379 1.20981 0.94989 1.36514 1.02464 0.91437 1.25058 0.97037 0.93916 0.96980 1.70042 1.03368 1.42094 1.34204 0.86553 0.79069 0.78373 0.84253 1.19472 1.20909 1.20677 1.23550 0.99900 0.97118 0.99054 1.22564 0.97411 0.96587 1.00396 1.22908 0.95666 0.96922 0.99152 0.90033 0.90751 0.89982 0.90077 0.90085 0.88168 0.90448 0.91857 0.92238 0.92813 0.92289 0.91828 0.90278 0.92990 0.90792 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.26 36.01 0.37 -0.65 16 2 C 0.03 0.50 7.33 -82.10 -0.60 -0.10 16 3 N -0.38 -6.64 12.07 33.42 0.40 -6.23 16 4 O 0.09 1.51 11.20 17.18 0.19 1.70 16 5 C 0.00 0.01 6.85 -35.30 -0.24 -0.23 16 6 C -0.08 -1.00 8.73 36.00 0.31 -0.69 16 7 C -0.18 -3.12 4.55 -104.42 -0.48 -3.59 16 8 C -0.01 -0.21 3.10 -92.92 -0.29 -0.50 16 9 H 0.11 1.83 7.34 -51.93 -0.38 1.45 16 10 C -0.14 -1.87 9.01 37.16 0.33 -1.53 16 11 C 0.47 10.14 5.99 36.00 0.22 10.35 16 12 O -0.50 -12.06 12.34 -18.75 -0.23 -12.29 16 13 O -0.34 -8.08 9.67 -39.27 -0.38 -8.46 16 14 C 0.24 5.83 0.47 -90.95 -0.04 5.79 16 15 C -0.51 -13.82 7.08 -34.44 -0.24 -14.07 16 16 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 17 C 0.08 2.05 5.29 -17.82 -0.09 1.96 16 18 N -0.86 -23.61 12.78 55.43 0.71 -22.91 16 19 Si 0.89 21.19 29.55 -169.99 -5.02 16.16 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 C -0.16 -3.31 6.56 -25.83 -0.17 -3.48 16 24 C -0.13 -2.54 7.81 -25.83 -0.20 -2.74 16 25 C -0.11 -2.39 7.28 -25.92 -0.19 -2.58 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 0.96 7.55 -51.93 -0.39 0.57 16 29 H 0.08 0.82 8.04 -51.93 -0.42 0.41 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.10 1.55 5.53 -51.93 -0.29 1.26 16 32 H 0.08 1.05 8.11 -51.93 -0.42 0.63 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.75 6.51 -51.93 -0.34 0.41 16 35 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.38 8.08 -51.93 -0.42 0.96 16 38 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.76 7.97 -51.93 -0.41 1.35 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 339.63 15.07 5.12 5.12 Total: -1.00 -30.98 339.63 -6.52 -37.51 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.00 Total: 1.47 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -1.31 Total: -12.07 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: 1.11 Total: -29.14 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.42 Total: -19.05 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.98 -6.52 -37.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810860764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.093 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds