Wall clock time and date at job start Tue Mar 31 2020 06:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30170 * 126.80112 * 2 1 4 4 O 1.20918 * 111.60383 * 179.97438 * 3 2 1 5 5 C 1.34040 * 111.56949 * 359.75618 * 4 3 2 6 6 C 1.50698 * 126.78362 * 180.29408 * 5 4 3 7 7 C 1.35449 * 106.44167 * 0.38384 * 5 4 3 8 8 C 1.50707 * 128.00555 * 179.90935 * 7 5 4 9 9 H 1.09005 * 109.47192 * 179.68354 * 8 7 5 10 10 C 1.53003 * 109.47286 * 299.68046 * 8 7 5 11 11 C 1.50697 * 109.47057 * 59.68247 * 8 7 5 12 12 O 1.20827 * 120.00081 * 0.02562 * 11 8 7 13 13 O 1.34235 * 119.99887 * 179.97438 * 11 8 7 14 14 C 1.45195 * 116.99676 * 177.77470 * 13 11 8 15 15 C 1.50703 * 112.84923 * 65.18084 * 14 13 11 16 16 H 1.08002 * 119.99621 * 242.61035 * 15 14 13 17 17 C 1.37880 * 120.00434 * 62.60880 * 15 14 13 18 18 N 1.31516 * 119.99401 * 353.75594 * 17 15 14 19 19 Si 1.86793 * 120.00161 * 173.75749 * 17 15 14 20 20 H 1.48504 * 109.47252 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47070 * 119.99889 * 19 17 15 22 22 H 1.48501 * 109.47031 * 239.99930 * 19 17 15 23 23 C 1.53784 * 113.61923 * 293.97792 * 14 13 11 24 24 C 1.53946 * 87.02102 * 220.05096 * 23 14 13 25 25 C 1.53777 * 87.11475 * 25.36180 * 24 23 14 26 26 H 1.09004 * 109.46590 * 270.02514 * 1 2 3 27 27 H 1.09004 * 109.47127 * 30.02076 * 1 2 3 28 28 H 1.08990 * 109.47219 * 150.02514 * 1 2 3 29 29 H 1.09003 * 109.47071 * 270.11337 * 6 5 4 30 30 H 1.09002 * 109.46888 * 30.10953 * 6 5 4 31 31 H 1.09001 * 109.47717 * 150.11143 * 6 5 4 32 32 H 1.08995 * 109.46904 * 180.02562 * 10 8 7 33 33 H 1.09005 * 109.46834 * 300.00078 * 10 8 7 34 34 H 1.08995 * 109.46838 * 60.00049 * 10 8 7 35 35 H 0.97001 * 119.99179 * 185.01184 * 18 17 15 36 36 H 1.09002 * 113.60774 * 334.57321 * 23 14 13 37 37 H 1.08998 * 113.60842 * 105.47293 * 23 14 13 38 38 H 1.09003 * 113.54085 * 270.81002 * 24 23 14 39 39 H 1.08998 * 113.74496 * 139.94683 * 24 23 14 40 40 H 1.09002 * 113.61918 * 220.08994 * 25 24 23 41 41 H 1.08998 * 113.69218 * 89.19563 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 0.0005 5 6 3.6025 -0.6068 0.0062 6 6 4.9021 -1.3696 0.0148 7 6 2.3540 -1.1320 0.0008 8 6 1.9591 -2.5864 0.0018 9 1 0.8721 -2.6678 0.0019 10 6 2.5214 -3.2685 -1.2470 11 6 2.5131 -3.2564 1.2327 12 8 3.1617 -2.6183 2.0278 13 8 2.2852 -4.5619 1.4463 14 6 2.8908 -5.1522 2.6266 15 6 2.3430 -4.5854 3.9111 16 1 2.9951 -4.0537 4.5881 17 6 1.0092 -4.7457 4.2219 18 7 0.1898 -5.2835 3.3450 19 14 0.3663 -4.1988 5.8882 20 1 1.4816 -3.6298 6.6868 21 1 -0.6844 -3.1666 5.6989 22 1 -0.2094 -5.3656 6.6039 23 6 4.4273 -5.1916 2.5765 24 6 4.3321 -6.5901 3.2129 25 6 2.9264 -6.6894 2.5974 26 1 -0.3633 0.0005 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8901 -0.5134 29 1 5.2210 -1.5557 -1.0108 30 1 5.6632 -0.7848 0.5314 31 1 4.7623 -2.3200 0.5299 32 1 2.2353 -4.3203 -1.2464 33 1 2.1206 -2.7838 -2.1373 34 1 3.6083 -3.1872 -1.2471 35 1 -0.7604 -5.3300 3.5342 36 1 4.8310 -5.1991 1.5640 37 1 4.9041 -4.4505 3.2180 38 1 4.3313 -6.5733 4.3028 39 1 5.0408 -7.3088 2.8013 40 1 2.1934 -7.1557 3.2556 41 1 2.9176 -7.1072 1.5907 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810860764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:12 Heat of formation + Delta-G solvation = -29.695182 kcal Electronic energy + Delta-G solvation = -25045.557744 eV Core-core repulsion = 21507.969531 eV Total energy + Delta-G solvation = -3537.588213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.92475 -41.19950 -39.11448 -36.70871 -35.93017 -34.82698 -34.36269 -32.60580 -29.61688 -28.70352 -28.19814 -26.32180 -26.02750 -24.87899 -23.25094 -21.59385 -20.56810 -20.39883 -18.79127 -18.64072 -17.96294 -17.29093 -17.02282 -16.80904 -16.27688 -15.79093 -15.39621 -15.08193 -14.48093 -14.35607 -14.24795 -14.03428 -13.94812 -13.64384 -13.53241 -13.35842 -13.27452 -13.00797 -12.92821 -12.84401 -12.80517 -12.27912 -12.13513 -12.10660 -11.88967 -11.72528 -11.58102 -11.01933 -10.83976 -10.77541 -10.44282 -10.37464 -10.06820 -8.19586 -6.35343 0.48483 1.12945 1.30527 1.34630 1.44623 1.78941 2.12577 2.33768 2.46225 3.11567 3.18020 3.53207 3.73504 3.86969 4.03986 4.06975 4.18289 4.22894 4.34764 4.41743 4.47910 4.58984 4.60509 4.63586 4.66760 4.75664 4.88615 4.89529 4.93267 4.96761 5.02817 5.12292 5.16720 5.20519 5.33518 5.40666 5.47500 5.65512 5.81229 6.07183 6.50203 6.69523 7.26468 7.32309 7.50137 8.84022 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015748 B = 0.006287 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.603193 B = 4452.777044 C = 5270.307017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.023 3.977 3 N -0.395 5.395 4 O 0.081 5.919 5 C 0.004 3.996 6 C -0.075 4.075 7 C -0.204 4.204 8 C -0.003 4.003 9 H 0.111 0.889 10 C -0.132 4.132 11 C 0.460 3.540 12 O -0.532 6.532 13 O -0.351 6.351 14 C 0.219 3.781 15 C -0.526 4.526 16 H 0.044 0.956 17 C 0.037 3.963 18 N -0.881 5.881 19 Si 0.938 3.062 20 H -0.276 1.276 21 H -0.283 1.283 22 H -0.269 1.269 23 C -0.149 4.149 24 C -0.115 4.115 25 C -0.108 4.108 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.264 0.736 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.047 0.953 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.709 2.527 -10.676 11.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.136 4.136 3 N -0.106 5.106 4 O 0.021 5.979 5 C -0.060 4.060 6 C -0.132 4.132 7 C -0.208 4.208 8 C -0.023 4.023 9 H 0.129 0.871 10 C -0.189 4.189 11 C 0.304 3.696 12 O -0.423 6.423 13 O -0.267 6.267 14 C 0.185 3.815 15 C -0.564 4.564 16 H 0.062 0.938 17 C -0.166 4.166 18 N -0.518 5.518 19 Si 0.764 3.236 20 H -0.201 1.201 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.186 4.186 24 C -0.152 4.152 25 C -0.146 4.146 26 H 0.093 0.907 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.136 0.864 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.547 3.862 -10.414 12.001 hybrid contribution -0.826 -0.177 1.491 1.714 sum 3.721 3.685 -8.922 10.346 Atomic orbital electron populations 1.20313 0.84261 1.05195 1.03710 1.23869 1.00163 0.88217 1.01370 1.73750 0.89643 1.24507 1.22657 1.84705 1.21526 1.23121 1.68571 1.24600 0.99216 0.82989 0.99178 1.20588 0.88976 0.98455 1.05158 1.20469 0.92511 0.95854 1.12010 1.19183 1.02515 0.87486 0.93139 0.87077 1.21773 1.01844 1.01114 0.94183 1.23435 0.77506 0.81838 0.86855 1.90537 1.39179 1.65648 1.46927 1.86450 1.69436 1.23646 1.47206 1.21328 0.88077 0.90579 0.81553 1.21082 0.95044 1.36520 1.03748 0.93808 1.25607 0.97303 0.94241 0.99482 1.70099 1.03481 1.42947 1.35303 0.85814 0.78200 0.78276 0.81273 1.20072 1.20940 1.19386 1.23465 0.97468 0.97640 1.00070 1.22490 0.96465 0.96348 0.99912 1.22889 0.96633 0.95313 0.99725 0.90678 0.88915 0.88269 0.86395 0.88849 0.90204 0.90579 0.89226 0.91258 0.92688 0.90193 0.93465 0.91095 0.89017 0.93391 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.98 10.26 71.24 0.73 -1.25 16 2 C 0.02 0.74 7.33 43.58 0.32 1.06 16 3 N -0.40 -13.74 12.07 -49.57 -0.60 -14.34 16 4 O 0.08 2.70 11.20 71.64 0.80 3.50 16 5 C 0.00 0.11 6.85 25.04 0.17 0.29 16 6 C -0.07 -1.84 8.73 71.24 0.62 -1.22 16 7 C -0.20 -6.77 4.55 -19.73 -0.09 -6.86 16 8 C 0.00 -0.11 3.10 -12.28 -0.04 -0.15 16 9 H 0.11 3.61 7.34 -2.38 -0.02 3.59 16 10 C -0.13 -3.24 9.01 71.98 0.65 -2.59 16 11 C 0.46 19.89 5.99 71.23 0.43 20.31 16 12 O -0.53 -25.74 12.34 21.96 0.27 -25.47 16 13 O -0.35 -16.63 9.67 -51.46 -0.50 -17.13 16 14 C 0.22 10.53 0.47 -11.01 -0.01 10.52 16 15 C -0.53 -28.94 7.08 25.60 0.18 -28.76 16 16 H 0.04 2.55 7.81 -2.91 -0.02 2.52 16 17 C 0.04 2.03 5.29 84.66 0.45 2.48 16 18 N -0.88 -48.75 12.78 21.45 0.27 -48.48 16 19 Si 0.94 43.97 29.55 68.60 2.03 46.00 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 C -0.15 -6.06 6.56 31.18 0.20 -5.85 16 24 C -0.11 -4.22 7.81 31.18 0.24 -3.97 16 25 C -0.11 -4.65 7.28 31.12 0.23 -4.42 16 26 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.09 1.99 8.14 -2.38 -0.02 1.98 16 28 H 0.10 2.15 7.55 -2.39 -0.02 2.13 16 29 H 0.12 2.01 8.04 -2.39 -0.02 1.99 16 30 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.08 2.37 5.53 -2.39 -0.01 2.36 16 32 H 0.08 1.90 8.11 -2.39 -0.02 1.88 16 33 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.07 1.55 6.51 -2.39 -0.02 1.54 16 35 H 0.26 13.87 8.32 -92.71 -0.77 13.10 16 36 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 37 H 0.05 2.05 8.08 -2.39 -0.02 2.03 16 38 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.05 2.28 7.97 -2.39 -0.02 2.27 16 41 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -67.58 339.63 7.40 -60.18 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 1.03 Total: 16.16 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: 4.09 Total: -20.42 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: -0.32 Total: -62.82 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: 0.58 Total: -39.10 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -67.58 7.40 -60.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810860764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.488 kcal (2) G-P(sol) polarization free energy of solvation -67.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds