Wall clock time and date at job start Tue Mar 31 2020 06:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30171 * 126.80676 * 2 1 4 4 O 1.20925 * 111.61148 * 179.97438 * 3 2 1 5 5 C 1.34045 * 111.56208 * 0.02562 * 4 3 2 6 6 C 1.50693 * 126.77615 * 180.02562 * 5 4 3 7 7 C 1.35455 * 106.44819 * 359.97438 * 5 4 3 8 8 C 1.50693 * 128.00692 * 179.73841 * 7 5 4 9 9 H 1.09004 * 109.47262 * 2.85418 * 8 7 5 10 10 C 1.53000 * 109.47209 * 242.85466 * 8 7 5 11 11 C 1.50706 * 109.47362 * 122.85445 * 8 7 5 12 12 O 1.20822 * 119.99641 * 359.97438 * 11 8 7 13 13 O 1.34223 * 120.00239 * 179.97438 * 11 8 7 14 14 C 1.45196 * 116.99894 * 185.31751 * 13 11 8 15 15 C 1.50702 * 112.84833 * 54.27966 * 14 13 11 16 16 H 1.08001 * 119.99487 * 237.63502 * 15 14 13 17 17 C 1.37876 * 120.00048 * 57.63814 * 15 14 13 18 18 N 1.31513 * 119.99891 * 3.17485 * 17 15 14 19 19 Si 1.86804 * 119.99779 * 183.17078 * 17 15 14 20 20 H 1.48503 * 109.47123 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46683 * 120.00305 * 19 17 15 22 22 H 1.48500 * 109.47021 * 240.00200 * 19 17 15 23 23 C 1.53781 * 113.61814 * 282.96781 * 14 13 11 24 24 C 1.53778 * 87.08268 * 220.02012 * 23 14 13 25 25 C 1.53780 * 87.08344 * 25.43459 * 24 23 14 26 26 H 1.08998 * 109.47564 * 275.08964 * 1 2 3 27 27 H 1.09008 * 109.46863 * 35.09389 * 1 2 3 28 28 H 1.08999 * 109.47537 * 155.08769 * 1 2 3 29 29 H 1.09001 * 109.47238 * 269.99830 * 6 5 4 30 30 H 1.09004 * 109.47402 * 29.99711 * 6 5 4 31 31 H 1.09000 * 109.47536 * 149.99801 * 6 5 4 32 32 H 1.09000 * 109.47313 * 63.13119 * 10 8 7 33 33 H 1.08993 * 109.47460 * 183.13205 * 10 8 7 34 34 H 1.09006 * 109.47097 * 303.13296 * 10 8 7 35 35 H 0.97005 * 119.99677 * 185.01553 * 18 17 15 36 36 H 1.08999 * 113.61103 * 334.57207 * 23 14 13 37 37 H 1.08992 * 113.61138 * 105.46917 * 23 14 13 38 38 H 1.08994 * 113.61919 * 270.88688 * 24 23 14 39 39 H 1.09000 * 113.68694 * 139.98910 * 24 23 14 40 40 H 1.08997 * 113.61510 * 220.02268 * 25 24 23 41 41 H 1.08998 * 113.69732 * 89.12253 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0422 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6024 -0.6069 0.0004 6 6 4.9021 -1.3697 0.0014 7 6 2.3539 -1.1321 0.0003 8 6 1.9590 -2.5864 -0.0053 9 1 2.8544 -3.2063 0.0416 10 6 1.1879 -2.9006 -1.2890 11 6 1.0855 -2.8744 1.1885 12 8 0.8122 -1.9896 1.9645 13 8 0.6112 -4.1138 1.3898 14 6 -0.3183 -4.2932 2.4907 15 6 -1.4984 -3.3587 2.4184 16 1 -1.7057 -2.6865 3.2379 17 6 -2.3132 -3.3619 1.3062 18 7 -2.0980 -4.2233 0.3359 19 14 -3.7228 -2.1429 1.1776 20 1 -3.7505 -1.2883 2.3917 21 1 -3.5318 -1.2904 -0.0232 22 1 -5.0063 -2.8809 1.0617 23 6 0.3599 -4.3266 3.8704 24 6 -0.6214 -5.4519 4.2384 25 6 -0.7086 -5.7607 2.7344 26 1 -0.3634 0.0912 1.0236 27 1 -0.3633 0.8409 -0.5909 28 1 -0.3634 -0.9320 -0.4329 29 1 5.2164 -1.5534 -1.0260 30 1 5.6655 -0.7862 0.5160 31 1 4.7645 -2.3213 0.5149 32 1 1.8377 -2.7455 -2.1503 33 1 0.8543 -3.9380 -1.2678 34 1 0.3225 -2.2420 -1.3634 35 1 -2.6241 -4.1785 -0.4778 36 1 1.4008 -4.6483 3.8376 37 1 0.2158 -3.4148 4.4499 38 1 -1.5577 -5.0926 4.6653 39 1 -0.1695 -6.2532 4.8231 40 1 -1.7154 -6.0065 2.3968 41 1 0.0395 -6.4745 2.3897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810860765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:14 Heat of formation + Delta-G solvation = -11.282424 kcal Electronic energy + Delta-G solvation = -25298.772416 eV Core-core repulsion = 21761.982640 eV Total energy + Delta-G solvation = -3536.789776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.59198 -39.40062 -37.42255 -35.27132 -34.10786 -33.45284 -32.31913 -31.53061 -28.29819 -27.42933 -26.23221 -24.61075 -24.52164 -23.25732 -21.77574 -19.91325 -19.34905 -18.58664 -17.38144 -16.89577 -16.54938 -15.58746 -15.18078 -14.87058 -14.55024 -14.13558 -13.92132 -13.75341 -13.29965 -13.04179 -12.90638 -12.64354 -12.55755 -12.27379 -12.10918 -11.74661 -11.57867 -11.46435 -11.25234 -11.08521 -11.02912 -10.90347 -10.44405 -10.33789 -10.28209 -9.92453 -9.81553 -9.41091 -9.21008 -8.94885 -8.82995 -8.55145 -8.43467 -6.15124 -4.23440 1.72744 2.57077 3.20306 3.30430 3.36424 3.36969 3.47986 4.10881 4.33347 4.57547 4.73111 5.06120 5.10249 5.17404 5.37740 5.45452 5.48367 5.56768 5.67385 5.75239 5.81294 5.90398 5.91322 6.00023 6.05608 6.19127 6.25203 6.25626 6.34131 6.46025 6.53356 6.56140 6.62789 6.83455 6.88509 7.08231 7.29330 7.54715 7.73544 7.90041 8.37292 8.62859 8.78186 9.24843 9.45654 10.89679 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.006828 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.552522 B = 4099.656216 C = 4967.446838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.062 3.938 3 N -0.379 5.379 4 O 0.089 5.911 5 C -0.041 4.041 6 C -0.070 4.070 7 C -0.172 4.172 8 C -0.011 4.011 9 H 0.102 0.898 10 C -0.135 4.135 11 C 0.469 3.531 12 O -0.496 6.496 13 O -0.345 6.345 14 C 0.243 3.757 15 C -0.505 4.505 16 H 0.066 0.934 17 C 0.078 3.922 18 N -0.862 5.862 19 Si 0.881 3.119 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.283 1.283 23 C -0.160 4.160 24 C -0.132 4.132 25 C -0.108 4.108 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.261 0.739 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.904 0.471 -2.865 10.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 N -0.087 5.087 4 O 0.027 5.973 5 C -0.104 4.104 6 C -0.128 4.128 7 C -0.176 4.176 8 C -0.031 4.031 9 H 0.120 0.880 10 C -0.192 4.192 11 C 0.310 3.690 12 O -0.384 6.384 13 O -0.261 6.261 14 C 0.209 3.791 15 C -0.542 4.542 16 H 0.084 0.916 17 C -0.128 4.128 18 N -0.498 5.498 19 Si 0.708 3.292 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.209 1.209 23 C -0.198 4.198 24 C -0.170 4.170 25 C -0.146 4.146 26 H 0.109 0.891 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.493 1.914 -2.733 10.062 hybrid contribution -0.929 -0.018 -0.070 0.932 sum 8.563 1.895 -2.803 9.208 Atomic orbital electron populations 1.20287 0.85886 1.03027 1.04218 1.23308 0.98899 0.87871 0.99641 1.73763 0.89166 1.23899 1.21920 1.84748 1.21874 1.22095 1.68610 1.24068 0.97770 0.84199 1.04398 1.20291 0.90120 0.98624 1.03728 1.20455 0.91682 0.96375 1.09067 1.19214 0.99012 0.89784 0.95087 0.87982 1.21722 0.99697 1.04158 0.93643 1.22448 0.79074 0.82340 0.85147 1.90559 1.55689 1.46563 1.45574 1.86401 1.56611 1.29391 1.53701 1.21107 0.85862 0.93622 0.78460 1.20940 1.07945 1.20677 1.04649 0.91598 1.24957 0.96868 0.94867 0.96062 1.70038 1.40358 1.33445 1.05989 0.86699 0.82347 0.81595 0.78563 1.19469 1.20584 1.20873 1.23545 0.97301 0.98438 1.00541 1.22520 0.99643 0.97836 0.96974 1.22933 1.01538 0.96699 0.93456 0.89114 0.91656 0.89784 0.89630 0.90023 0.89247 0.92536 0.89789 0.91812 0.92889 0.92223 0.92088 0.90335 0.93053 0.90665 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 9.12 36.00 0.33 -1.15 16 2 C 0.06 1.18 6.68 -82.10 -0.55 0.63 16 3 N -0.38 -7.14 12.07 33.43 0.40 -6.74 16 4 O 0.09 1.49 11.20 17.16 0.19 1.68 16 5 C -0.04 -0.61 7.49 -35.30 -0.26 -0.87 16 6 C -0.07 -0.67 10.18 36.00 0.37 -0.30 16 7 C -0.17 -3.00 4.51 -104.42 -0.47 -3.47 16 8 C -0.01 -0.19 3.09 -92.92 -0.29 -0.48 16 9 H 0.10 1.47 7.11 -51.93 -0.37 1.10 16 10 C -0.14 -2.24 9.08 37.16 0.34 -1.90 16 11 C 0.47 10.36 6.58 36.01 0.24 10.59 16 12 O -0.50 -12.20 12.62 -18.75 -0.24 -12.44 16 13 O -0.34 -8.16 9.57 -39.24 -0.38 -8.54 16 14 C 0.24 5.86 0.48 -90.95 -0.04 5.81 16 15 C -0.50 -13.30 6.50 -34.44 -0.22 -13.53 16 16 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 17 C 0.08 2.02 5.41 -17.82 -0.10 1.93 16 18 N -0.86 -22.60 12.78 55.43 0.71 -21.89 16 19 Si 0.88 20.65 29.54 -169.99 -5.02 15.63 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.16 -3.45 7.09 -25.92 -0.18 -3.63 16 24 C -0.13 -2.59 7.80 -25.92 -0.20 -2.79 16 25 C -0.11 -2.39 7.31 -25.91 -0.19 -2.58 16 26 H 0.09 1.91 7.80 -51.93 -0.40 1.50 16 27 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 28 H 0.08 1.69 5.65 -51.93 -0.29 1.40 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.80 7.36 -51.93 -0.38 0.42 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.48 8.04 -51.93 -0.42 1.07 16 34 H 0.06 1.16 5.65 -51.93 -0.29 0.87 16 35 H 0.26 6.58 8.32 -40.82 -0.34 6.24 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.36 8.09 -51.93 -0.42 0.94 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 1.78 8.09 -51.93 -0.42 1.36 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 339.50 15.07 5.12 5.12 Total: -1.00 -29.92 339.50 -6.38 -36.30 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.93 Total: 2.62 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -1.24 Total: -11.74 kcal Atomic # 7 Polarization: -29.74 SS G_CDS: 1.11 Total: -28.63 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.42 Total: -19.29 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.92 -6.38 -36.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810860765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.021 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds