Wall clock time and date at job start Tue Mar 31 2020 06:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30171 * 126.80676 * 2 1 4 4 O 1.20925 * 111.61148 * 179.97438 * 3 2 1 5 5 C 1.34045 * 111.56208 * 0.02562 * 4 3 2 6 6 C 1.50693 * 126.77615 * 180.02562 * 5 4 3 7 7 C 1.35455 * 106.44819 * 359.97438 * 5 4 3 8 8 C 1.50693 * 128.00692 * 179.73841 * 7 5 4 9 9 H 1.09004 * 109.47262 * 2.85418 * 8 7 5 10 10 C 1.53000 * 109.47209 * 242.85466 * 8 7 5 11 11 C 1.50706 * 109.47362 * 122.85445 * 8 7 5 12 12 O 1.20822 * 119.99641 * 359.97438 * 11 8 7 13 13 O 1.34223 * 120.00239 * 179.97438 * 11 8 7 14 14 C 1.45196 * 116.99894 * 185.31751 * 13 11 8 15 15 C 1.50702 * 112.84833 * 54.27966 * 14 13 11 16 16 H 1.08001 * 119.99487 * 237.63502 * 15 14 13 17 17 C 1.37876 * 120.00048 * 57.63814 * 15 14 13 18 18 N 1.31513 * 119.99891 * 3.17485 * 17 15 14 19 19 Si 1.86804 * 119.99779 * 183.17078 * 17 15 14 20 20 H 1.48503 * 109.47123 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46683 * 120.00305 * 19 17 15 22 22 H 1.48500 * 109.47021 * 240.00200 * 19 17 15 23 23 C 1.53781 * 113.61814 * 282.96781 * 14 13 11 24 24 C 1.53778 * 87.08268 * 220.02012 * 23 14 13 25 25 C 1.53780 * 87.08344 * 25.43459 * 24 23 14 26 26 H 1.08998 * 109.47564 * 275.08964 * 1 2 3 27 27 H 1.09008 * 109.46863 * 35.09389 * 1 2 3 28 28 H 1.08999 * 109.47537 * 155.08769 * 1 2 3 29 29 H 1.09001 * 109.47238 * 269.99830 * 6 5 4 30 30 H 1.09004 * 109.47402 * 29.99711 * 6 5 4 31 31 H 1.09000 * 109.47536 * 149.99801 * 6 5 4 32 32 H 1.09000 * 109.47313 * 63.13119 * 10 8 7 33 33 H 1.08993 * 109.47460 * 183.13205 * 10 8 7 34 34 H 1.09006 * 109.47097 * 303.13296 * 10 8 7 35 35 H 0.97005 * 119.99677 * 185.01553 * 18 17 15 36 36 H 1.08999 * 113.61103 * 334.57207 * 23 14 13 37 37 H 1.08992 * 113.61138 * 105.46917 * 23 14 13 38 38 H 1.08994 * 113.61919 * 270.88688 * 24 23 14 39 39 H 1.09000 * 113.68694 * 139.98910 * 24 23 14 40 40 H 1.08997 * 113.61510 * 220.02268 * 25 24 23 41 41 H 1.08998 * 113.69732 * 89.12253 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0422 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6024 -0.6069 0.0004 6 6 4.9021 -1.3697 0.0014 7 6 2.3539 -1.1321 0.0003 8 6 1.9590 -2.5864 -0.0053 9 1 2.8544 -3.2063 0.0416 10 6 1.1879 -2.9006 -1.2890 11 6 1.0855 -2.8744 1.1885 12 8 0.8122 -1.9896 1.9645 13 8 0.6112 -4.1138 1.3898 14 6 -0.3183 -4.2932 2.4907 15 6 -1.4984 -3.3587 2.4184 16 1 -1.7057 -2.6865 3.2379 17 6 -2.3132 -3.3619 1.3062 18 7 -2.0980 -4.2233 0.3359 19 14 -3.7228 -2.1429 1.1776 20 1 -3.7505 -1.2883 2.3917 21 1 -3.5318 -1.2904 -0.0232 22 1 -5.0063 -2.8809 1.0617 23 6 0.3599 -4.3266 3.8704 24 6 -0.6214 -5.4519 4.2384 25 6 -0.7086 -5.7607 2.7344 26 1 -0.3634 0.0912 1.0236 27 1 -0.3633 0.8409 -0.5909 28 1 -0.3634 -0.9320 -0.4329 29 1 5.2164 -1.5534 -1.0260 30 1 5.6655 -0.7862 0.5160 31 1 4.7645 -2.3213 0.5149 32 1 1.8377 -2.7455 -2.1503 33 1 0.8543 -3.9380 -1.2678 34 1 0.3225 -2.2420 -1.3634 35 1 -2.6241 -4.1785 -0.4778 36 1 1.4008 -4.6483 3.8376 37 1 0.2158 -3.4148 4.4499 38 1 -1.5577 -5.0926 4.6653 39 1 -0.1695 -6.2532 4.8231 40 1 -1.7154 -6.0065 2.3968 41 1 0.0395 -6.4745 2.3897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810860765.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:13 Heat of formation + Delta-G solvation = -26.954813 kcal Electronic energy + Delta-G solvation = -25299.452022 eV Core-core repulsion = 21761.982640 eV Total energy + Delta-G solvation = -3537.469382 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.94558 -41.13569 -39.10373 -36.73134 -35.88084 -34.73105 -34.32137 -32.78980 -29.78338 -28.45735 -28.15861 -26.32133 -26.04797 -24.90940 -23.30745 -21.26185 -20.84595 -20.41837 -18.79860 -18.62382 -17.97189 -17.17640 -16.90263 -16.80552 -16.22845 -15.67129 -15.55102 -15.09782 -14.71164 -14.43272 -14.26667 -13.91283 -13.81848 -13.76025 -13.42126 -13.38722 -13.20332 -12.97695 -12.91064 -12.79281 -12.73956 -12.41521 -12.12782 -12.12623 -11.83903 -11.69375 -11.57217 -10.97965 -10.83394 -10.79744 -10.39704 -10.34502 -10.06482 -8.16374 -6.28169 0.50211 1.14644 1.29404 1.35010 1.43937 1.79703 2.21511 2.35402 2.54073 3.13029 3.20098 3.54486 3.73903 3.85209 4.02666 4.06550 4.20114 4.22773 4.28761 4.43954 4.44614 4.49884 4.62261 4.66738 4.73647 4.79796 4.87503 4.90078 4.92568 4.96420 5.04666 5.08047 5.17504 5.26127 5.39217 5.41290 5.49793 5.67826 5.80761 6.05207 6.55846 6.71546 7.32732 7.36473 7.54975 8.87700 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.006828 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.552522 B = 4099.656216 C = 4967.446838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.038 3.962 3 N -0.399 5.399 4 O 0.093 5.907 5 C -0.013 4.013 6 C -0.073 4.073 7 C -0.201 4.201 8 C 0.000 4.000 9 H 0.141 0.859 10 C -0.128 4.128 11 C 0.460 3.540 12 O -0.529 6.529 13 O -0.353 6.353 14 C 0.222 3.778 15 C -0.517 4.517 16 H 0.039 0.961 17 C 0.049 3.951 18 N -0.874 5.874 19 Si 0.919 3.081 20 H -0.281 1.281 21 H -0.275 1.275 22 H -0.274 1.274 23 C -0.155 4.155 24 C -0.114 4.114 25 C -0.106 4.106 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.117 0.883 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.263 0.737 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.302 -0.402 -3.519 12.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.120 4.120 3 N -0.108 5.108 4 O 0.030 5.970 5 C -0.077 4.077 6 C -0.129 4.129 7 C -0.205 4.205 8 C -0.020 4.020 9 H 0.158 0.842 10 C -0.185 4.185 11 C 0.303 3.697 12 O -0.418 6.418 13 O -0.269 6.269 14 C 0.188 3.812 15 C -0.555 4.555 16 H 0.057 0.943 17 C -0.154 4.154 18 N -0.511 5.511 19 Si 0.746 3.254 20 H -0.206 1.206 21 H -0.200 1.200 22 H -0.199 1.199 23 C -0.193 4.193 24 C -0.152 4.152 25 C -0.144 4.144 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.135 0.865 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.882 1.036 -3.396 12.401 hybrid contribution -1.592 0.294 0.144 1.626 sum 10.290 1.330 -3.251 10.873 Atomic orbital electron populations 1.20108 0.86975 1.02984 1.02564 1.23380 0.98757 0.89108 1.00792 1.73740 0.89901 1.24272 1.22875 1.84718 1.20889 1.23317 1.68046 1.24950 0.98996 0.83214 1.00523 1.20659 0.87613 0.98465 1.06201 1.20499 0.92510 0.95876 1.11573 1.19245 0.99380 0.90571 0.92765 0.84186 1.21667 0.99535 1.02526 0.94777 1.23404 0.78881 0.81355 0.86022 1.90544 1.57028 1.47148 1.47128 1.86381 1.56496 1.30444 1.53629 1.21254 0.85823 0.94296 0.79877 1.20935 1.09452 1.20931 1.04149 0.94258 1.25347 0.98223 0.95908 0.95963 1.70071 1.40963 1.33971 1.06113 0.86109 0.80949 0.80290 0.78092 1.20618 1.20004 1.19936 1.23490 0.98570 0.98463 0.98768 1.22442 0.98990 0.97902 0.95845 1.22892 1.00531 0.95752 0.95177 0.91876 0.90042 0.91117 0.86484 0.87903 0.88058 0.88852 0.91144 0.94244 0.92729 0.90503 0.93982 0.91095 0.89187 0.93028 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.76 9.12 71.23 0.65 -2.11 16 2 C 0.04 1.44 6.68 43.58 0.29 1.73 16 3 N -0.40 -14.85 12.07 -49.54 -0.60 -15.45 16 4 O 0.09 2.93 11.20 71.58 0.80 3.73 16 5 C -0.01 -0.35 7.49 25.04 0.19 -0.16 16 6 C -0.07 -1.03 10.18 71.23 0.73 -0.30 16 7 C -0.20 -6.69 4.51 -19.73 -0.09 -6.78 16 8 C 0.00 0.00 3.09 -12.29 -0.04 -0.04 16 9 H 0.14 3.51 7.11 -2.39 -0.02 3.50 16 10 C -0.13 -4.08 9.08 71.98 0.65 -3.43 16 11 C 0.46 20.31 6.58 71.24 0.47 20.78 16 12 O -0.53 -26.65 12.62 21.98 0.28 -26.37 16 13 O -0.35 -16.67 9.57 -51.35 -0.49 -17.16 16 14 C 0.22 10.74 0.48 -11.01 -0.01 10.74 16 15 C -0.52 -28.11 6.50 25.60 0.17 -27.94 16 16 H 0.04 2.28 7.81 -2.91 -0.02 2.26 16 17 C 0.05 2.63 5.41 84.65 0.46 3.09 16 18 N -0.87 -46.53 12.78 21.45 0.27 -46.25 16 19 Si 0.92 43.36 29.54 68.60 2.03 45.39 16 20 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 21 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 23 C -0.16 -6.59 7.09 31.12 0.22 -6.37 16 24 C -0.11 -4.32 7.80 31.12 0.24 -4.08 16 25 C -0.11 -4.59 7.31 31.12 0.23 -4.36 16 26 H 0.06 2.83 7.80 -2.39 -0.02 2.81 16 27 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 28 H 0.07 2.98 5.65 -2.39 -0.01 2.96 16 29 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.10 1.28 7.36 -2.39 -0.02 1.26 16 32 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.07 2.43 8.04 -2.39 -0.02 2.41 16 34 H 0.04 1.44 5.65 -2.38 -0.01 1.42 16 35 H 0.26 13.40 8.32 -92.70 -0.77 12.63 16 36 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.04 1.91 8.09 -2.39 -0.02 1.89 16 38 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.09 2.71 8.14 -2.39 -0.02 2.70 16 40 H 0.05 2.45 8.09 -2.39 -0.02 2.43 16 41 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -67.36 339.50 7.48 -59.88 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 1.03 Total: 15.47 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 4.16 Total: -19.23 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -0.32 Total: -61.70 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: 0.59 Total: -39.81 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -67.36 7.48 -59.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810860765.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.926 kcal (2) G-P(sol) polarization free energy of solvation -67.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds