Wall clock time and date at job start Tue Mar 31 2020 06:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34349 * 125.41903 * 2 1 4 4 C 1.46905 * 106.35727 * 180.02562 * 3 2 1 5 5 C 1.46448 * 127.06155 * 179.97438 * 4 3 2 6 6 O 1.21346 * 119.99734 * 180.02562 * 5 4 3 7 7 C 1.50699 * 120.00167 * 0.02794 * 5 4 3 8 8 O 1.45206 * 109.47021 * 179.97438 * 7 5 4 9 9 C 1.34224 * 117.00077 * 180.02562 * 8 7 5 10 10 O 1.20833 * 120.00103 * 359.97438 * 9 8 7 11 11 C 1.50696 * 120.00302 * 180.02562 * 9 8 7 12 12 C 1.52999 * 109.47581 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47581 * 180.02562 * 12 11 9 14 14 H 1.07998 * 119.99778 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00242 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99823 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00194 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46894 * 59.99975 * 17 15 13 19 19 H 1.48495 * 109.47369 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46953 * 300.00310 * 17 15 13 21 21 C 1.38221 * 105.87157 * 0.26106 * 4 3 2 22 22 C 1.50696 * 125.91881 * 179.70341 * 21 4 3 23 23 N 1.34490 * 108.15683 * 359.57476 * 21 4 3 24 24 C 1.46503 * 124.77281 * 180.17232 * 23 21 4 25 25 H 1.09000 * 109.46690 * 89.97809 * 1 2 3 26 26 H 1.08998 * 109.47462 * 209.97928 * 1 2 3 27 27 H 1.09001 * 109.46895 * 329.97834 * 1 2 3 28 28 H 1.08000 * 126.82428 * 0.03435 * 3 2 1 29 29 H 1.09000 * 109.47247 * 60.00028 * 7 5 4 30 30 H 1.09001 * 109.47358 * 299.99454 * 7 5 4 31 31 H 1.09009 * 109.46972 * 299.99362 * 11 9 8 32 32 H 1.08995 * 109.47473 * 59.99636 * 11 9 8 33 33 H 1.09005 * 109.46903 * 300.00018 * 12 11 9 34 34 H 1.09000 * 109.47608 * 59.99121 * 12 11 9 35 35 H 0.97002 * 119.99857 * 179.97438 * 16 15 13 36 36 H 1.09000 * 109.47391 * 90.02317 * 22 21 4 37 37 H 1.09008 * 109.47142 * 210.02725 * 22 21 4 38 38 H 1.09007 * 109.47381 * 330.02094 * 22 21 4 39 39 H 1.08994 * 109.47079 * 270.33528 * 24 23 21 40 40 H 1.08998 * 109.47365 * 30.33537 * 24 23 21 41 41 H 1.09001 * 109.46978 * 150.33005 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2857 1.0949 0.0000 4 6 3.6742 0.6151 -0.0006 5 6 4.8900 1.4314 -0.0014 6 8 5.9795 0.8971 -0.0023 7 6 4.7882 2.9349 -0.0009 8 8 6.1214 3.5103 -0.0012 9 6 6.2070 4.8498 -0.0004 10 8 5.2012 5.5195 0.0001 11 6 7.5574 5.5187 -0.0012 12 6 7.3743 7.0377 0.0007 13 6 8.7247 7.7065 -0.0007 14 1 9.6237 7.1080 -0.0024 15 6 8.8126 9.0824 0.0000 16 7 7.7179 9.8112 0.0015 17 14 10.4866 9.9114 -0.0010 18 1 11.2396 9.5045 -1.2145 19 1 10.3089 11.3857 0.0007 20 1 11.2420 9.5030 1.2104 21 6 3.5972 -0.7650 -0.0070 22 6 4.7666 -1.7155 -0.0164 23 7 2.2980 -1.1123 -0.0006 24 6 1.8016 -2.4907 -0.0007 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3634 -0.8901 0.5135 27 1 -0.3633 0.8898 0.5142 28 1 1.9563 2.1234 0.0005 29 1 4.2517 3.2625 0.8895 30 1 4.2504 3.2630 -0.8905 31 1 8.1118 5.2189 0.8882 32 1 8.1102 5.2201 -0.8918 33 1 6.8196 7.3379 -0.8883 34 1 6.8216 7.3360 0.8916 35 1 7.7797 10.7792 0.0025 36 1 5.0524 -1.9500 1.0090 37 1 4.4852 -2.6327 -0.5340 38 1 5.6080 -1.2515 -0.5311 39 1 1.6785 -2.8324 -1.0283 40 1 2.5158 -3.1342 0.5131 41 1 0.8412 -2.5311 0.5132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614095.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:34 Heat of formation + Delta-G solvation = -92.374090 kcal Electronic energy + Delta-G solvation = -22346.944746 eV Core-core repulsion = 18806.638571 eV Total energy + Delta-G solvation = -3540.306175 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.73302 -39.99223 -38.60499 -35.88989 -33.52567 -33.37622 -32.94166 -31.15294 -29.78083 -29.21565 -26.78566 -25.72252 -24.97667 -22.44165 -21.74642 -19.94165 -19.74786 -18.52087 -17.25324 -16.81653 -16.41640 -16.22963 -16.08097 -15.54487 -15.12478 -14.52281 -14.43540 -14.28445 -14.04319 -13.63754 -13.55093 -13.38184 -13.05141 -12.85833 -12.82331 -12.56379 -12.24213 -12.15101 -12.10678 -12.00394 -11.69039 -11.14597 -10.89732 -10.62681 -10.37714 -9.97489 -9.91275 -9.71592 -9.41606 -9.13377 -8.92053 -8.32548 -8.28687 -5.96681 -4.01200 1.21864 2.00052 2.37634 2.88464 3.03245 3.07732 3.37113 3.41179 3.43866 4.16792 4.26611 4.39423 4.48259 4.51227 4.58319 4.71747 4.86832 4.93350 5.15172 5.22608 5.25191 5.30327 5.33847 5.37986 5.38593 5.47331 5.56728 5.62264 5.72100 5.99514 6.21131 6.28893 6.50239 6.68771 6.76671 6.87638 6.99214 7.66404 7.71866 7.79458 8.03380 8.31210 8.47117 9.05746 9.62466 11.14357 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.038822 B = 0.002383 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.058214 B =11745.202220 C =12424.598600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.004 3.996 3 C -0.150 4.150 4 C -0.262 4.262 5 C 0.429 3.571 6 O -0.450 6.450 7 C 0.025 3.975 8 O -0.349 6.349 9 C 0.457 3.543 10 O -0.507 6.507 11 C -0.103 4.103 12 C 0.033 3.967 13 C -0.528 4.528 14 H 0.059 0.941 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.111 3.889 22 C -0.096 4.096 23 N -0.438 5.438 24 C 0.064 3.936 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.151 0.849 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.262 0.738 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.468 -27.277 0.016 31.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 C -0.174 4.174 4 C -0.270 4.270 5 C 0.307 3.693 6 O -0.326 6.326 7 C -0.050 4.050 8 O -0.266 6.266 9 C 0.301 3.699 10 O -0.394 6.394 11 C -0.140 4.140 12 C -0.004 4.004 13 C -0.566 4.566 14 H 0.077 0.923 15 C -0.144 4.144 16 N -0.529 5.529 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.007 4.007 22 C -0.153 4.153 23 N -0.115 5.115 24 C -0.078 4.078 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.168 0.832 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.120 0.880 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.458 -27.501 0.019 31.547 hybrid contribution 0.424 0.593 0.001 0.729 sum -15.034 -26.908 0.021 30.823 Atomic orbital electron populations 1.20345 0.87708 1.03317 1.02744 1.20214 0.93657 0.85382 1.11041 1.21917 0.90633 0.97965 1.06844 1.20702 0.93913 0.92005 1.20334 1.21098 0.87312 0.88943 0.71948 1.90525 1.29774 1.75245 1.37042 1.23063 0.84669 0.92549 1.04674 1.86651 1.30820 1.24381 1.84767 1.24862 0.94270 0.79321 0.71494 1.90629 1.38744 1.64740 1.45260 1.21769 0.88678 0.99385 1.04179 1.19019 0.97456 0.85016 0.98887 1.21133 0.92218 0.91527 1.51713 0.92319 1.25021 0.96667 0.97509 0.95170 1.69986 1.27306 1.05585 1.50007 0.86593 0.84146 0.78216 0.78649 1.20163 1.21304 1.20171 1.20815 0.84645 0.94165 1.01049 1.20605 0.94594 0.96575 1.03573 1.43476 1.05199 1.06631 1.56191 1.22116 1.01617 0.80388 1.03654 0.90957 0.91878 0.89839 0.83153 0.88306 0.88313 0.88846 0.88838 0.95569 0.95569 0.92837 0.90168 0.91657 0.88045 0.90525 0.89504 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.05 36.01 0.36 -0.07 16 2 C 0.00 0.03 6.84 -81.89 -0.56 -0.53 16 3 C -0.15 -1.56 10.58 -37.45 -0.40 -1.96 16 4 C -0.26 -3.23 6.29 -103.09 -0.65 -3.87 16 5 C 0.43 6.28 7.20 -31.00 -0.22 6.05 16 6 O -0.45 -7.65 15.04 -14.15 -0.21 -7.86 16 7 C 0.03 0.39 5.51 36.01 0.20 0.59 16 8 O -0.35 -6.55 9.75 -45.88 -0.45 -7.00 16 9 C 0.46 9.57 7.96 36.00 0.29 9.86 16 10 O -0.51 -11.82 15.73 -18.76 -0.30 -12.11 16 11 C -0.10 -2.22 5.75 -27.89 -0.16 -2.38 16 12 C 0.03 0.90 4.26 -27.89 -0.12 0.79 16 13 C -0.53 -15.10 9.11 -34.44 -0.31 -15.41 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -27.42 13.29 55.43 0.74 -26.69 16 17 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.11 1.15 6.94 -81.44 -0.56 0.58 16 22 C -0.10 -0.81 9.27 36.00 0.33 -0.48 16 23 N -0.44 -3.58 3.08 -114.93 -0.35 -3.93 16 24 C 0.06 0.25 10.38 59.85 0.62 0.87 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.23 6.92 -51.93 -0.36 -0.13 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.10 1.39 8.13 -51.93 -0.42 0.96 16 30 H 0.10 1.38 8.13 -51.93 -0.42 0.96 16 31 H 0.09 1.87 8.14 -51.92 -0.42 1.45 16 32 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 33 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.38 7.60 -51.92 -0.39 -0.02 16 38 H 0.10 1.05 6.53 -51.93 -0.34 0.72 16 39 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.09 0.24 7.51 -51.93 -0.39 -0.15 16 41 H 0.09 0.20 6.88 -51.93 -0.36 -0.16 16 LS Contribution 354.20 15.07 5.34 5.34 Total: -1.00 -36.14 354.20 -7.56 -43.71 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -6.03 Total: -3.90 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -1.28 Total: -4.37 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: 0.38 Total: -30.62 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.96 Total: -26.97 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.14 -7.56 -43.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614095.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.669 kcal (2) G-P(sol) polarization free energy of solvation -36.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds