Wall clock time and date at job start Tue Mar 31 2020 06:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34349 * 125.41903 * 2 1 4 4 C 1.46905 * 106.35727 * 180.02562 * 3 2 1 5 5 C 1.46448 * 127.06155 * 179.97438 * 4 3 2 6 6 O 1.21346 * 119.99734 * 180.02562 * 5 4 3 7 7 C 1.50699 * 120.00167 * 0.02794 * 5 4 3 8 8 O 1.45206 * 109.47021 * 179.97438 * 7 5 4 9 9 C 1.34224 * 117.00077 * 180.02562 * 8 7 5 10 10 O 1.20833 * 120.00103 * 359.97438 * 9 8 7 11 11 C 1.50696 * 120.00302 * 180.02562 * 9 8 7 12 12 C 1.52999 * 109.47581 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47581 * 180.02562 * 12 11 9 14 14 H 1.07998 * 119.99778 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00242 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99823 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00194 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46894 * 59.99975 * 17 15 13 19 19 H 1.48495 * 109.47369 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46953 * 300.00310 * 17 15 13 21 21 C 1.38221 * 105.87157 * 0.26106 * 4 3 2 22 22 C 1.50696 * 125.91881 * 179.70341 * 21 4 3 23 23 N 1.34490 * 108.15683 * 359.57476 * 21 4 3 24 24 C 1.46503 * 124.77281 * 180.17232 * 23 21 4 25 25 H 1.09000 * 109.46690 * 89.97809 * 1 2 3 26 26 H 1.08998 * 109.47462 * 209.97928 * 1 2 3 27 27 H 1.09001 * 109.46895 * 329.97834 * 1 2 3 28 28 H 1.08000 * 126.82428 * 0.03435 * 3 2 1 29 29 H 1.09000 * 109.47247 * 60.00028 * 7 5 4 30 30 H 1.09001 * 109.47358 * 299.99454 * 7 5 4 31 31 H 1.09009 * 109.46972 * 299.99362 * 11 9 8 32 32 H 1.08995 * 109.47473 * 59.99636 * 11 9 8 33 33 H 1.09005 * 109.46903 * 300.00018 * 12 11 9 34 34 H 1.09000 * 109.47608 * 59.99121 * 12 11 9 35 35 H 0.97002 * 119.99857 * 179.97438 * 16 15 13 36 36 H 1.09000 * 109.47391 * 90.02317 * 22 21 4 37 37 H 1.09008 * 109.47142 * 210.02725 * 22 21 4 38 38 H 1.09007 * 109.47381 * 330.02094 * 22 21 4 39 39 H 1.08994 * 109.47079 * 270.33528 * 24 23 21 40 40 H 1.08998 * 109.47365 * 30.33537 * 24 23 21 41 41 H 1.09001 * 109.46978 * 150.33005 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2857 1.0949 0.0000 4 6 3.6742 0.6151 -0.0006 5 6 4.8900 1.4314 -0.0014 6 8 5.9795 0.8971 -0.0023 7 6 4.7882 2.9349 -0.0009 8 8 6.1214 3.5103 -0.0012 9 6 6.2070 4.8498 -0.0004 10 8 5.2012 5.5195 0.0001 11 6 7.5574 5.5187 -0.0012 12 6 7.3743 7.0377 0.0007 13 6 8.7247 7.7065 -0.0007 14 1 9.6237 7.1080 -0.0024 15 6 8.8126 9.0824 0.0000 16 7 7.7179 9.8112 0.0015 17 14 10.4866 9.9114 -0.0010 18 1 11.2396 9.5045 -1.2145 19 1 10.3089 11.3857 0.0007 20 1 11.2420 9.5030 1.2104 21 6 3.5972 -0.7650 -0.0070 22 6 4.7666 -1.7155 -0.0164 23 7 2.2980 -1.1123 -0.0006 24 6 1.8016 -2.4907 -0.0007 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3634 -0.8901 0.5135 27 1 -0.3633 0.8898 0.5142 28 1 1.9563 2.1234 0.0005 29 1 4.2517 3.2625 0.8895 30 1 4.2504 3.2630 -0.8905 31 1 8.1118 5.2189 0.8882 32 1 8.1102 5.2201 -0.8918 33 1 6.8196 7.3379 -0.8883 34 1 6.8216 7.3360 0.8916 35 1 7.7797 10.7792 0.0025 36 1 5.0524 -1.9500 1.0090 37 1 4.4852 -2.6327 -0.5340 38 1 5.6080 -1.2515 -0.5311 39 1 1.6785 -2.8324 -1.0283 40 1 2.5158 -3.1342 0.5131 41 1 0.8412 -2.5311 0.5132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614095.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:33 Heat of formation + Delta-G solvation = -112.928385 kcal Electronic energy + Delta-G solvation = -22347.836047 eV Core-core repulsion = 18806.638571 eV Total energy + Delta-G solvation = -3541.197476 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.45102 -41.57688 -39.83374 -37.50628 -35.64782 -34.00893 -33.60168 -33.18078 -30.78978 -29.95341 -28.12306 -27.05007 -25.76723 -24.17133 -22.80576 -21.51785 -20.74144 -19.50220 -18.96329 -18.13357 -17.85965 -17.69835 -16.93140 -16.76952 -16.47836 -15.97147 -15.88785 -15.52941 -14.81252 -14.77736 -14.30729 -14.15348 -14.09402 -13.90209 -13.72417 -13.65711 -13.52308 -13.20679 -13.15053 -13.01250 -12.79247 -12.57668 -12.53972 -12.36989 -12.00806 -11.84478 -11.76407 -11.51885 -11.31665 -10.73682 -10.56127 -9.65592 -9.01807 -8.19124 -6.32893 0.24873 1.18786 1.29644 1.42352 1.48330 1.48607 1.56523 1.89062 2.11545 2.43899 3.10589 3.14273 3.72965 3.81718 3.88695 3.97934 4.06481 4.07772 4.16808 4.36725 4.38665 4.44054 4.45801 4.53725 4.60973 4.68483 4.68942 4.80720 4.84303 4.89943 5.02343 5.13215 5.22590 5.32229 5.47148 5.55531 5.74131 5.80954 6.04969 6.13946 6.26297 6.56227 6.75368 6.85312 7.36920 8.93341 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.038822 B = 0.002383 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.058214 B =11745.202220 C =12424.598600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.010 3.990 3 C -0.175 4.175 4 C -0.298 4.298 5 C 0.433 3.567 6 O -0.485 6.485 7 C 0.019 3.981 8 O -0.349 6.349 9 C 0.466 3.534 10 O -0.537 6.537 11 C -0.095 4.095 12 C 0.040 3.960 13 C -0.546 4.546 14 H 0.076 0.924 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.975 3.025 18 H -0.263 1.263 19 H -0.286 1.286 20 H -0.263 1.263 21 C 0.111 3.889 22 C -0.094 4.094 23 N -0.433 5.433 24 C 0.053 3.947 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.154 0.846 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.114 0.886 33 H -0.008 1.008 34 H -0.008 1.008 35 H 0.264 0.736 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.664 -29.598 0.054 33.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 C -0.198 4.198 4 C -0.306 4.306 5 C 0.314 3.686 6 O -0.363 6.363 7 C -0.055 4.055 8 O -0.266 6.266 9 C 0.311 3.689 10 O -0.427 6.427 11 C -0.132 4.132 12 C 0.003 3.997 13 C -0.584 4.584 14 H 0.094 0.906 15 C -0.202 4.202 16 N -0.574 5.574 17 Si 0.799 3.201 18 H -0.188 1.188 19 H -0.211 1.211 20 H -0.188 1.188 21 C -0.009 4.009 22 C -0.151 4.151 23 N -0.108 5.108 24 C -0.087 4.087 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.172 0.828 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.011 0.989 34 H 0.011 0.989 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.119 0.881 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.676 -29.871 0.056 33.734 hybrid contribution 0.327 1.182 -0.013 1.226 sum -15.350 -28.689 0.043 32.537 Atomic orbital electron populations 1.20460 0.85050 1.04625 1.03786 1.20737 0.95213 0.84973 1.08795 1.22096 0.90197 0.99082 1.08434 1.20644 0.93602 0.93074 1.23291 1.21214 0.87911 0.88434 0.71064 1.90506 1.30937 1.75467 1.39414 1.23407 0.83007 0.93345 1.05728 1.86603 1.33053 1.22836 1.84135 1.24575 0.93532 0.79975 0.70801 1.90618 1.39621 1.65599 1.46836 1.21538 0.89671 0.95802 1.06185 1.18795 0.96371 0.88901 0.95649 1.21605 0.93147 0.92270 1.51379 0.90609 1.26100 1.01189 0.98427 0.94463 1.70150 1.30197 1.05990 1.51098 0.85349 0.78574 0.76740 0.79443 1.18791 1.21139 1.18799 1.21068 0.86173 0.93783 0.99878 1.20609 0.93198 0.97188 1.04090 1.43797 1.04334 1.08326 1.54382 1.22510 1.02941 0.78011 1.05230 0.89923 0.89737 0.89417 0.82823 0.87292 0.87309 0.86770 0.86764 0.98933 0.98925 0.92694 0.89480 0.88581 0.90365 0.89016 0.88085 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.05 71.24 0.72 0.10 16 2 C 0.01 0.16 6.84 40.95 0.28 0.44 16 3 C -0.18 -3.59 10.58 23.65 0.25 -3.34 16 4 C -0.30 -7.40 6.29 -18.87 -0.12 -7.52 16 5 C 0.43 13.06 7.20 27.83 0.20 13.26 16 6 O -0.48 -17.02 15.04 15.56 0.23 -16.79 16 7 C 0.02 0.61 5.51 71.24 0.39 1.00 16 8 O -0.35 -13.31 9.75 -45.00 -0.44 -13.75 16 9 C 0.47 19.92 7.96 71.23 0.57 20.48 16 10 O -0.54 -25.95 15.73 21.94 0.35 -25.60 16 11 C -0.09 -4.11 5.75 29.85 0.17 -3.94 16 12 C 0.04 2.25 4.26 29.85 0.13 2.37 16 13 C -0.55 -31.43 9.11 25.60 0.23 -31.20 16 14 H 0.08 4.01 7.74 -2.91 -0.02 3.98 16 15 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 16 N -0.93 -58.95 13.29 21.45 0.28 -58.67 16 17 Si 0.98 44.68 29.54 68.60 2.03 46.70 16 18 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 21 C 0.11 2.18 6.94 42.15 0.29 2.47 16 22 C -0.09 -1.47 9.27 71.23 0.66 -0.81 16 23 N -0.43 -6.06 3.08 -517.53 -1.59 -7.65 16 24 C 0.05 0.22 10.38 127.77 1.33 1.54 16 25 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.08 0.29 6.92 -2.39 -0.02 0.27 16 27 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 29 H 0.11 3.16 8.13 -2.39 -0.02 3.14 16 30 H 0.11 3.16 8.13 -2.39 -0.02 3.14 16 31 H 0.11 4.49 8.14 -2.38 -0.02 4.47 16 32 H 0.11 4.50 8.14 -2.39 -0.02 4.48 16 33 H -0.01 -0.48 8.10 -2.38 -0.02 -0.50 16 34 H -0.01 -0.48 8.10 -2.39 -0.02 -0.49 16 35 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.10 0.86 7.60 -2.38 -0.02 0.84 16 38 H 0.08 1.64 6.53 -2.38 -0.02 1.63 16 39 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.10 0.17 7.51 -2.39 -0.02 0.15 16 41 H 0.11 0.03 6.88 -2.39 -0.02 0.01 16 Total: -1.00 -80.57 354.20 7.44 -73.12 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 1.03 Total: 7.53 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 5.56 Total: -4.91 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -1.31 Total: -66.32 kcal Atomic # 8 Polarization: -56.28 SS G_CDS: 0.14 Total: -56.14 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -80.57 7.44 -73.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614095.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.805 kcal (2) G-P(sol) polarization free energy of solvation -80.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds