Wall clock time and date at job start Tue Mar 31 2020 06:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50698 * 109.47429 * 2 1 4 4 C 1.38628 * 119.81856 * 89.99717 * 3 2 1 5 5 C 1.37953 * 120.43269 * 180.02562 * 4 3 2 6 6 C 1.38959 * 120.07358 * 359.97438 * 5 4 3 7 7 N 1.38827 * 120.18178 * 179.97438 * 6 5 4 8 8 C 1.40409 * 119.63714 * 0.02562 * 6 5 4 9 9 C 1.47290 * 120.21182 * 180.02562 * 8 6 5 10 10 O 1.21519 * 120.00088 * 354.39120 * 9 8 6 11 11 O 1.34766 * 119.99920 * 174.38913 * 9 8 6 12 12 C 1.45202 * 117.00378 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47381 * 179.97438 * 12 11 9 14 14 O 1.42905 * 109.47066 * 64.99868 * 13 12 11 15 15 C 1.42895 * 114.00002 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47091 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00257 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99775 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00298 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99911 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47325 * 90.00139 * 20 18 16 22 22 H 1.48503 * 109.47396 * 209.99916 * 20 18 16 23 23 H 1.48501 * 109.47165 * 330.00293 * 20 18 16 24 24 C 1.37726 * 119.81783 * 270.30379 * 3 2 1 25 25 H 1.08996 * 109.47313 * 300.00299 * 1 2 3 26 26 H 1.09003 * 109.47306 * 59.99871 * 1 2 3 27 27 H 1.08995 * 109.47356 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47020 * 239.99498 * 2 1 3 29 29 H 1.09003 * 109.47306 * 120.00129 * 2 1 3 30 30 H 1.07995 * 119.78223 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.96318 * 179.97438 * 5 4 3 32 32 H 0.97004 * 119.99986 * 185.65830 * 7 6 5 33 33 H 0.96996 * 120.00309 * 5.66175 * 7 6 5 34 34 H 1.09005 * 109.46800 * 299.99816 * 12 11 9 35 35 H 1.09003 * 109.47036 * 59.99701 * 12 11 9 36 36 H 1.09000 * 109.46760 * 184.99448 * 13 12 11 37 37 H 1.08997 * 109.47305 * 305.00022 * 13 12 11 38 38 H 1.08996 * 109.47549 * 300.00089 * 15 14 13 39 39 H 1.09000 * 109.47046 * 59.99925 * 15 14 13 40 40 H 0.97006 * 120.00305 * 179.97438 * 19 18 16 41 41 H 1.07996 * 120.04011 * 359.97267 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0707 1.2027 5 6 2.7215 3.3714 1.2175 6 6 2.9580 4.0400 0.0225 7 7 3.4198 5.3491 0.0348 8 6 2.7263 3.3846 -1.1974 9 6 2.9732 4.0811 -2.4715 10 8 3.2804 5.2568 -2.4717 11 8 2.8586 3.4144 -3.6371 12 6 3.1170 4.1640 -4.8535 13 6 2.9399 3.2468 -6.0652 14 8 1.5739 2.8370 -6.1567 15 6 1.2991 1.9731 -7.2613 16 6 -0.1624 1.6053 -7.2598 17 1 -0.8160 1.9928 -6.4924 18 6 -0.6650 0.7740 -8.2382 19 7 0.1310 0.3016 -9.1724 20 14 -2.4766 0.3186 -8.2368 21 1 -3.2371 1.3110 -9.0382 22 1 -2.6481 -1.0321 -8.8297 23 1 -2.9851 0.3151 -6.8416 24 6 2.2547 2.0685 -1.1949 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0803 1.5553 2.1342 31 1 2.8975 3.8706 2.1589 32 1 3.5058 5.8409 -0.7969 33 1 3.6564 5.7721 0.8750 34 1 2.4174 4.9970 -4.9225 35 1 4.1373 4.5471 -4.8343 36 1 3.2195 3.7840 -6.9714 37 1 3.5758 2.3688 -5.9524 38 1 1.5445 2.4841 -8.1922 39 1 1.9010 1.0686 -7.1737 40 1 -0.2225 -0.2836 -9.8606 41 1 2.0696 1.5588 -2.1288 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815209527.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:23 Heat of formation + Delta-G solvation = -140.789394 kcal Electronic energy + Delta-G solvation = -22859.690963 eV Core-core repulsion = 19317.285343 eV Total energy + Delta-G solvation = -3542.405620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.79153 -40.12054 -38.74196 -37.62603 -36.19758 -34.96191 -33.39801 -32.55098 -31.40115 -29.10095 -28.85431 -25.54459 -24.56634 -24.33495 -23.70831 -22.67899 -21.31077 -18.92619 -18.70605 -18.13429 -17.94487 -17.75509 -17.52051 -17.05284 -16.40477 -16.27652 -15.68895 -15.41506 -15.11735 -14.79632 -14.70029 -14.35850 -14.12683 -14.00676 -13.81855 -13.53802 -13.23345 -13.03780 -12.92434 -12.71626 -12.64188 -12.47032 -12.03859 -11.88508 -11.78017 -11.69588 -11.36536 -11.33063 -11.28988 -10.90870 -10.29325 -10.03057 -8.49640 -8.33279 -6.45613 -0.20179 0.59704 1.39657 1.42314 1.49252 1.54580 1.64446 2.33877 2.84088 2.94319 3.00638 3.04034 3.60007 3.86369 3.89675 3.96025 4.07311 4.27032 4.33341 4.39963 4.46575 4.49889 4.60143 4.63468 4.67234 4.83219 4.85717 5.02227 5.13533 5.14936 5.15910 5.22115 5.29505 5.38115 5.46613 5.53088 5.74480 5.90868 5.93693 6.42145 6.48471 6.68917 6.78001 6.95752 7.26034 8.78996 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013839 B = 0.003766 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.749774 B = 7432.536503 C = 9002.719243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.075 4.075 3 C -0.162 4.162 4 C -0.020 4.020 5 C -0.209 4.209 6 C 0.273 3.727 7 N -0.853 5.853 8 C -0.244 4.244 9 C 0.514 3.486 10 O -0.545 6.545 11 O -0.353 6.353 12 C 0.078 3.922 13 C 0.054 3.946 14 O -0.410 6.410 15 C 0.208 3.792 16 C -0.551 4.551 17 H 0.058 0.942 18 C 0.009 3.991 19 N -0.929 5.929 20 Si 0.981 3.019 21 H -0.267 1.267 22 H -0.272 1.272 23 H -0.266 1.266 24 C -0.025 4.025 25 H 0.064 0.936 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.162 0.838 31 H 0.162 0.838 32 H 0.409 0.591 33 H 0.409 0.591 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.055 0.945 38 H -0.007 1.007 39 H -0.011 1.011 40 H 0.272 0.728 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.968 4.235 23.308 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.164 4.164 4 C -0.038 4.038 5 C -0.231 4.231 6 C 0.160 3.840 7 N -0.399 5.399 8 C -0.251 4.251 9 C 0.365 3.635 10 O -0.439 6.439 11 O -0.269 6.269 12 C 0.005 3.995 13 C -0.023 4.023 14 O -0.330 6.330 15 C 0.133 3.867 16 C -0.589 4.589 17 H 0.077 0.923 18 C -0.189 4.189 19 N -0.568 5.568 20 Si 0.804 3.196 21 H -0.193 1.193 22 H -0.196 1.196 23 H -0.190 1.190 24 C -0.043 4.043 25 H 0.083 0.917 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.180 0.820 31 H 0.179 0.821 32 H 0.249 0.751 33 H 0.240 0.760 34 H 0.090 0.910 35 H 0.128 0.872 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.010 0.990 39 H 0.007 0.993 40 H 0.081 0.919 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.938 4.549 23.157 24.598 hybrid contribution -0.245 0.258 -1.085 1.142 sum 6.693 4.808 22.072 23.560 Atomic orbital electron populations 1.21782 0.95143 1.02085 1.01602 1.20455 0.95834 0.91522 1.03450 1.19829 1.06043 0.98206 0.92367 1.21404 0.91078 0.93142 0.98222 1.20939 1.09491 0.96641 0.96061 1.17935 0.88324 0.85516 0.92193 1.43386 1.70733 1.11423 1.14393 1.18586 1.20561 0.97432 0.88503 1.21447 0.72508 0.84723 0.84851 1.90404 1.48465 1.17608 1.87384 1.86656 1.80924 1.44109 1.15229 1.23218 1.02804 0.93793 0.79667 1.22646 0.85047 0.98255 0.96322 1.87870 1.25939 1.67991 1.51194 1.19873 0.96037 0.87290 0.83458 1.21370 0.94335 1.30396 1.12777 0.92329 1.25920 1.04012 0.94882 0.94116 1.70056 1.37755 1.33693 1.15271 0.85211 0.77559 0.77984 0.78845 1.19250 1.19649 1.19021 1.21168 0.92209 0.91820 0.99143 0.91666 0.94685 0.91584 0.92047 0.88752 0.82020 0.82094 0.75098 0.76006 0.90968 0.87235 0.89791 0.92635 0.98970 0.99277 0.91943 0.86463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.89 71.98 0.71 -2.07 16 2 C -0.08 -1.37 6.05 29.84 0.18 -1.19 16 3 C -0.16 -3.46 5.13 -19.89 -0.10 -3.56 16 4 C -0.02 -0.31 9.67 22.30 0.22 -0.10 16 5 C -0.21 -3.44 9.88 22.37 0.22 -3.22 16 6 C 0.27 6.24 6.76 38.74 0.26 6.51 16 7 N -0.85 -16.86 8.93 -50.93 -0.45 -17.31 16 8 C -0.24 -7.10 5.89 -19.99 -0.12 -7.22 16 9 C 0.51 17.25 7.87 70.20 0.55 17.80 16 10 O -0.54 -18.21 13.44 19.77 0.27 -17.94 16 11 O -0.35 -12.92 9.46 -54.11 -0.51 -13.43 16 12 C 0.08 2.60 5.85 71.98 0.42 3.02 16 13 C 0.05 2.04 6.33 71.98 0.46 2.50 16 14 O -0.41 -20.80 10.30 -145.57 -1.50 -22.30 16 15 C 0.21 11.89 5.69 71.24 0.41 12.30 16 16 C -0.55 -33.52 9.43 25.60 0.24 -33.28 16 17 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 18 C 0.01 0.55 5.46 84.65 0.46 1.01 16 19 N -0.93 -55.98 13.29 21.45 0.28 -55.70 16 20 Si 0.98 44.81 29.54 68.60 2.03 46.83 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 C -0.02 -0.69 9.25 22.53 0.21 -0.48 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.25 8.08 -2.39 -0.02 1.23 16 29 H 0.09 1.21 8.08 -2.39 -0.02 1.19 16 30 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 31 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 32 H 0.41 9.79 5.34 -94.64 -0.51 9.29 16 33 H 0.41 5.06 8.84 -92.71 -0.82 4.24 16 34 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 35 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 40 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 41 H 0.12 3.70 7.62 -2.91 -0.02 3.68 16 Total: -1.00 -72.63 352.91 3.95 -68.68 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -0.28 Total: 19.13 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 4.12 Total: -7.97 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -0.17 Total: -73.01 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -1.75 Total: -53.68 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -72.63 3.95 -68.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815209527.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.107 kcal (2) G-P(sol) polarization free energy of solvation -72.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds