Wall clock time and date at job start Tue Mar 31 2020 06:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47234 * 2 1 4 4 C 1.38252 * 119.88215 * 264.99612 * 3 2 1 5 5 C 1.37971 * 120.23248 * 179.72116 * 4 3 2 6 6 C 1.39671 * 119.99849 * 0.26109 * 5 4 3 7 7 C 1.47740 * 120.11508 * 179.97438 * 6 5 4 8 8 O 1.21473 * 120.00196 * 180.02562 * 7 6 5 9 9 O 1.34714 * 119.99790 * 359.97438 * 7 6 5 10 10 C 1.45203 * 116.99729 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47136 * 180.02562 * 10 9 7 12 12 O 1.42904 * 109.47138 * 65.00092 * 11 10 9 13 13 C 1.42892 * 114.00043 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47124 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00374 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99949 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99836 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00067 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47027 * 89.99753 * 18 16 14 20 20 H 1.48505 * 109.47163 * 209.99749 * 18 16 14 21 21 H 1.48496 * 109.47258 * 330.00087 * 18 16 14 22 22 C 1.39506 * 119.76987 * 359.97438 * 6 5 4 23 23 C 1.38669 * 119.77233 * 0.02562 * 22 6 5 24 24 N 1.39706 * 120.00544 * 179.97438 * 23 22 6 25 25 H 1.09003 * 109.47186 * 59.99970 * 1 2 3 26 26 H 1.09001 * 109.47083 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47341 * 300.00045 * 1 2 3 28 28 H 1.09002 * 109.47184 * 239.99429 * 2 1 3 29 29 H 1.09003 * 109.47186 * 120.00030 * 2 1 3 30 30 H 1.08002 * 119.88803 * 0.02562 * 4 3 2 31 31 H 1.07996 * 120.00220 * 180.27851 * 5 4 3 32 32 H 1.09000 * 109.47049 * 300.00682 * 10 9 7 33 33 H 1.09003 * 109.46777 * 60.00475 * 10 9 7 34 34 H 1.08994 * 109.47134 * 185.00236 * 11 10 9 35 35 H 1.09002 * 109.47081 * 305.00821 * 11 10 9 36 36 H 1.09004 * 109.47248 * 299.99698 * 13 12 11 37 37 H 1.09004 * 109.47621 * 60.00107 * 13 12 11 38 38 H 0.96999 * 119.99951 * 179.97438 * 17 16 14 39 39 H 1.07998 * 120.11234 * 179.97438 * 22 6 5 40 40 H 0.97000 * 119.99885 * 359.97438 * 24 23 22 41 41 H 0.96996 * 119.99962 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3605 2.0353 -1.1941 5 6 2.8157 3.3378 -1.2031 6 6 2.9515 4.0383 -0.0024 7 6 3.4391 5.4329 -0.0089 8 8 3.5569 6.0401 1.0366 9 8 3.7542 6.0308 -1.1742 10 6 4.2263 7.4022 -1.1049 11 6 4.5313 7.9085 -2.5161 12 8 3.3212 7.9631 -3.2744 13 6 3.4960 8.4253 -4.6152 14 6 2.1630 8.4432 -5.3181 15 1 1.2716 8.1330 -4.7933 16 6 2.0815 8.8565 -6.6310 17 7 0.9183 8.8716 -7.2445 18 14 3.6232 9.3937 -7.5386 19 1 4.2390 8.2190 -8.2066 20 1 3.2675 10.4129 -8.5584 21 1 4.5888 9.9761 -6.5724 22 6 2.6249 3.4166 1.2030 23 6 2.1684 2.1072 1.2009 24 7 1.8405 1.4797 2.4053 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.2556 1.4957 -2.1238 31 1 3.0667 3.8157 -2.1384 32 1 3.4575 8.0287 -0.6527 33 1 5.1319 7.4445 -0.4998 34 1 4.9688 8.9050 -2.4579 35 1 5.2338 7.2309 -3.0013 36 1 3.9122 9.4326 -4.6010 37 1 4.1769 7.7582 -5.1438 38 1 0.8608 9.1628 -8.1680 39 1 2.7282 3.9529 2.1347 40 1 1.9326 1.9598 3.2431 41 1 1.5208 0.5639 2.4037 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815213333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:23 Heat of formation + Delta-G solvation = -116.424874 kcal Electronic energy + Delta-G solvation = -22470.313969 eV Core-core repulsion = 18928.964874 eV Total energy + Delta-G solvation = -3541.349095 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.52819 -39.43488 -37.17604 -36.03670 -34.95797 -33.96576 -32.68234 -30.57030 -29.93112 -28.71654 -27.55206 -25.13436 -22.87509 -22.40473 -21.90750 -21.72257 -20.49803 -18.13609 -17.46205 -16.97333 -16.67888 -16.42463 -15.80718 -15.44090 -15.32502 -14.83581 -14.45132 -14.41600 -13.99579 -13.79747 -13.76035 -13.44004 -13.09472 -12.73433 -12.54561 -12.41626 -12.20825 -11.74574 -11.61899 -11.26740 -11.15931 -11.13553 -10.86555 -10.80941 -10.65789 -10.43982 -10.34157 -9.86577 -9.19476 -8.98971 -8.89539 -8.49709 -7.73467 -6.11212 -4.10426 0.66368 1.43737 2.61472 2.75188 3.24819 3.31761 3.32689 3.63059 3.75612 4.35313 4.46946 4.50988 4.57639 4.79352 4.86430 5.05844 5.18126 5.19854 5.20638 5.25510 5.28367 5.41482 5.51601 5.59916 5.68712 5.71232 5.74247 5.81392 5.93644 5.96897 6.08509 6.33513 6.39606 6.56658 6.56736 6.62795 6.97718 7.20188 7.47343 7.58309 7.87895 7.97614 8.64564 9.00705 9.47561 11.01831 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.003029 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.319398 B = 9241.204197 C =10386.256270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 C -0.129 4.129 4 C -0.084 4.084 5 C -0.109 4.109 6 C -0.080 4.080 7 C 0.508 3.492 8 O -0.516 6.516 9 O -0.334 6.334 10 C 0.075 3.925 11 C 0.058 3.942 12 O -0.375 6.375 13 C 0.168 3.832 14 C -0.519 4.519 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.895 5.895 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.266 1.266 22 C -0.133 4.133 23 C 0.203 3.797 24 N -0.878 5.878 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.131 0.869 31 H 0.141 0.859 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.004 0.996 37 H 0.001 0.999 38 H 0.266 0.734 39 H 0.134 0.866 40 H 0.398 0.602 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.006 -17.497 17.555 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.134 4.134 4 C -0.103 4.103 5 C -0.129 4.129 6 C -0.081 4.081 7 C 0.354 3.646 8 O -0.406 6.406 9 O -0.250 6.250 10 C 0.001 3.999 11 C -0.020 4.020 12 O -0.294 6.294 13 C 0.093 3.907 14 C -0.557 4.557 15 H 0.101 0.899 16 C -0.130 4.130 17 N -0.533 5.533 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.191 1.191 22 C -0.156 4.156 23 C 0.100 3.900 24 N -0.419 5.419 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.149 0.851 31 H 0.159 0.841 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.021 0.979 37 H 0.018 0.982 38 H 0.076 0.924 39 H 0.152 0.848 40 H 0.226 0.774 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 4.786 -17.264 17.686 25.175 hybrid contribution 0.952 0.475 -0.301 1.106 sum 5.737 -16.789 17.385 24.840 Atomic orbital electron populations 1.21786 0.94653 1.01648 1.02677 1.20417 0.96176 0.92435 1.02685 1.19621 1.04887 0.96960 0.91929 1.20839 0.97732 0.94557 0.97164 1.21372 0.99314 0.94366 0.97821 1.18818 1.04080 0.90768 0.94478 1.21214 0.74309 0.87269 0.81844 1.90790 1.50678 1.65845 1.33325 1.86642 1.75749 1.29449 1.33177 1.23193 0.99900 0.78971 0.97831 1.22402 0.90016 0.99117 0.90468 1.87984 1.27824 1.87537 1.26068 1.20633 0.98510 0.92650 0.78904 1.20887 0.93368 1.44748 0.96698 0.89898 1.24770 0.96192 0.95108 0.96903 1.69877 1.23763 1.47498 1.12192 0.86846 0.83721 0.79076 0.80063 1.19883 1.20789 1.19113 1.20564 1.03682 0.93483 0.97865 1.17309 0.94954 0.91250 0.86520 1.42458 1.76720 1.17315 1.05439 0.92032 0.92420 0.92638 0.90580 0.91608 0.85113 0.84087 0.90264 0.90234 0.91779 0.92990 0.97865 0.98154 0.92352 0.84846 0.77356 0.77247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.08 -0.55 5.50 -27.88 -0.15 -0.70 16 3 C -0.13 -1.25 5.16 -104.34 -0.54 -1.79 16 4 C -0.08 -0.91 9.65 -39.67 -0.38 -1.29 16 5 C -0.11 -1.42 9.61 -39.14 -0.38 -1.79 16 6 C -0.08 -1.12 5.87 -105.01 -0.62 -1.74 16 7 C 0.51 8.31 7.90 34.61 0.27 8.59 16 8 O -0.52 -9.12 16.13 -19.24 -0.31 -9.43 16 9 O -0.33 -5.77 9.44 -43.31 -0.41 -6.18 16 10 C 0.07 1.18 5.85 37.16 0.22 1.40 16 11 C 0.06 1.00 6.33 37.16 0.24 1.24 16 12 O -0.37 -8.84 10.30 -38.80 -0.40 -9.24 16 13 C 0.17 4.28 4.76 36.01 0.17 4.45 16 14 C -0.52 -15.54 9.99 -34.44 -0.34 -15.89 16 15 H 0.08 2.73 8.06 -52.49 -0.42 2.30 16 16 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.89 -27.69 13.96 55.43 0.77 -26.92 16 18 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 22 C -0.13 -1.61 9.44 -38.95 -0.37 -1.98 16 23 C 0.20 2.03 6.73 -83.83 -0.56 1.47 16 24 N -0.88 -5.85 8.99 32.39 0.29 -5.56 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.48 8.05 -51.93 -0.42 0.06 16 29 H 0.07 0.37 6.78 -51.93 -0.35 0.01 16 30 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 31 H 0.14 1.91 7.60 -52.49 -0.40 1.51 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.00 0.09 7.20 -51.93 -0.37 -0.28 16 37 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 38 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.13 1.55 7.65 -52.49 -0.40 1.15 16 40 H 0.40 2.10 8.84 -40.82 -0.36 1.74 16 41 H 0.40 1.97 6.91 -40.82 -0.28 1.69 16 LS Contribution 351.19 15.07 5.29 5.29 Total: -1.00 -34.52 351.19 -7.56 -42.07 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.95 Total: -0.05 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -2.17 Total: -6.64 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 1.06 Total: -32.48 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -1.12 Total: -24.85 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.52 -7.56 -42.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815213333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.352 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds