Wall clock time and date at job start Tue Mar 31 2020 06:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47234 * 2 1 4 4 C 1.38252 * 119.88215 * 264.99612 * 3 2 1 5 5 C 1.37971 * 120.23248 * 179.72116 * 4 3 2 6 6 C 1.39671 * 119.99849 * 0.26109 * 5 4 3 7 7 C 1.47740 * 120.11508 * 179.97438 * 6 5 4 8 8 O 1.21473 * 120.00196 * 180.02562 * 7 6 5 9 9 O 1.34714 * 119.99790 * 359.97438 * 7 6 5 10 10 C 1.45203 * 116.99729 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47136 * 180.02562 * 10 9 7 12 12 O 1.42904 * 109.47138 * 65.00092 * 11 10 9 13 13 C 1.42892 * 114.00043 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47124 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00374 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99949 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99836 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00067 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47027 * 89.99753 * 18 16 14 20 20 H 1.48505 * 109.47163 * 209.99749 * 18 16 14 21 21 H 1.48496 * 109.47258 * 330.00087 * 18 16 14 22 22 C 1.39506 * 119.76987 * 359.97438 * 6 5 4 23 23 C 1.38669 * 119.77233 * 0.02562 * 22 6 5 24 24 N 1.39706 * 120.00544 * 179.97438 * 23 22 6 25 25 H 1.09003 * 109.47186 * 59.99970 * 1 2 3 26 26 H 1.09001 * 109.47083 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47341 * 300.00045 * 1 2 3 28 28 H 1.09002 * 109.47184 * 239.99429 * 2 1 3 29 29 H 1.09003 * 109.47186 * 120.00030 * 2 1 3 30 30 H 1.08002 * 119.88803 * 0.02562 * 4 3 2 31 31 H 1.07996 * 120.00220 * 180.27851 * 5 4 3 32 32 H 1.09000 * 109.47049 * 300.00682 * 10 9 7 33 33 H 1.09003 * 109.46777 * 60.00475 * 10 9 7 34 34 H 1.08994 * 109.47134 * 185.00236 * 11 10 9 35 35 H 1.09002 * 109.47081 * 305.00821 * 11 10 9 36 36 H 1.09004 * 109.47248 * 299.99698 * 13 12 11 37 37 H 1.09004 * 109.47621 * 60.00107 * 13 12 11 38 38 H 0.96999 * 119.99951 * 179.97438 * 17 16 14 39 39 H 1.07998 * 120.11234 * 179.97438 * 22 6 5 40 40 H 0.97000 * 119.99885 * 359.97438 * 24 23 22 41 41 H 0.96996 * 119.99962 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3605 2.0353 -1.1941 5 6 2.8157 3.3378 -1.2031 6 6 2.9515 4.0383 -0.0024 7 6 3.4391 5.4329 -0.0089 8 8 3.5569 6.0401 1.0366 9 8 3.7542 6.0308 -1.1742 10 6 4.2263 7.4022 -1.1049 11 6 4.5313 7.9085 -2.5161 12 8 3.3212 7.9631 -3.2744 13 6 3.4960 8.4253 -4.6152 14 6 2.1630 8.4432 -5.3181 15 1 1.2716 8.1330 -4.7933 16 6 2.0815 8.8565 -6.6310 17 7 0.9183 8.8716 -7.2445 18 14 3.6232 9.3937 -7.5386 19 1 4.2390 8.2190 -8.2066 20 1 3.2675 10.4129 -8.5584 21 1 4.5888 9.9761 -6.5724 22 6 2.6249 3.4166 1.2030 23 6 2.1684 2.1072 1.2009 24 7 1.8405 1.4797 2.4053 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.2556 1.4957 -2.1238 31 1 3.0667 3.8157 -2.1384 32 1 3.4575 8.0287 -0.6527 33 1 5.1319 7.4445 -0.4998 34 1 4.9688 8.9050 -2.4579 35 1 5.2338 7.2309 -3.0013 36 1 3.9122 9.4326 -4.6010 37 1 4.1769 7.7582 -5.1438 38 1 0.8608 9.1628 -8.1680 39 1 2.7282 3.9529 2.1347 40 1 1.9326 1.9598 3.2431 41 1 1.5208 0.5639 2.4037 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815213333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:22 Heat of formation + Delta-G solvation = -139.397364 kcal Electronic energy + Delta-G solvation = -22471.310131 eV Core-core repulsion = 18928.964874 eV Total energy + Delta-G solvation = -3542.345257 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.68256 -40.39671 -38.80638 -37.44835 -35.77885 -34.88561 -34.64478 -31.97094 -30.88547 -29.79829 -29.29723 -26.04819 -24.09690 -23.81833 -23.33341 -22.81780 -21.47687 -19.21230 -19.10581 -18.35123 -17.91992 -17.74557 -17.01363 -16.63636 -16.51005 -16.43008 -16.11342 -15.19197 -15.01122 -14.76888 -14.65619 -14.58351 -14.49355 -14.29336 -13.89042 -13.57229 -13.33885 -13.00985 -12.86551 -12.64756 -12.49310 -12.28847 -12.00389 -11.86374 -11.82232 -11.74143 -11.59701 -11.55817 -11.35103 -10.92882 -10.40871 -9.88539 -8.49277 -8.36585 -6.45170 -0.33774 0.54438 1.34941 1.38583 1.47964 1.49271 1.58844 2.30673 2.80771 2.94840 2.96253 2.97154 3.54958 3.82360 3.88087 3.91756 4.10632 4.16948 4.32623 4.35844 4.45825 4.48364 4.51894 4.54228 4.58409 4.67906 4.83458 4.90942 5.00273 5.04890 5.08318 5.21408 5.31437 5.41192 5.41985 5.43001 5.56284 5.79020 5.91572 6.50540 6.58465 6.62845 6.71829 6.96921 7.19023 8.80815 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.003029 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.319398 B = 9241.204197 C =10386.256270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.125 4.125 4 C -0.086 4.086 5 C -0.126 4.126 6 C -0.103 4.103 7 C 0.506 3.494 8 O -0.537 6.537 9 O -0.351 6.351 10 C 0.072 3.928 11 C 0.051 3.949 12 O -0.408 6.408 13 C 0.178 3.822 14 C -0.549 4.549 15 H 0.026 0.974 16 C 0.012 3.988 17 N -0.943 5.943 18 Si 0.959 3.041 19 H -0.258 1.258 20 H -0.274 1.274 21 H -0.241 1.241 22 C -0.144 4.144 23 C 0.209 3.791 24 N -0.862 5.862 25 H 0.047 0.953 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.150 0.850 31 H 0.126 0.874 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.019 0.981 37 H 0.016 0.984 38 H 0.273 0.727 39 H 0.133 0.867 40 H 0.407 0.593 41 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.000 -18.856 17.911 26.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.130 4.130 4 C -0.104 4.104 5 C -0.146 4.146 6 C -0.105 4.105 7 C 0.353 3.647 8 O -0.429 6.429 9 O -0.267 6.267 10 C -0.001 4.001 11 C -0.025 4.025 12 O -0.328 6.328 13 C 0.103 3.897 14 C -0.587 4.587 15 H 0.045 0.955 16 C -0.186 4.186 17 N -0.583 5.583 18 Si 0.779 3.221 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.165 1.165 22 C -0.168 4.168 23 C 0.103 3.897 24 N -0.404 5.404 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.168 0.832 31 H 0.144 0.856 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.082 0.918 39 H 0.151 0.849 40 H 0.237 0.763 41 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 6.774 -18.652 18.094 26.855 hybrid contribution 0.203 0.782 -0.298 0.861 sum 6.977 -17.870 17.796 26.167 Atomic orbital electron populations 1.21775 0.94357 1.02611 1.01896 1.20504 0.96232 0.90501 1.04263 1.19984 1.03412 0.98317 0.91247 1.21079 0.97012 0.93692 0.98639 1.21331 1.00820 0.95544 0.96934 1.18854 1.06039 0.89901 0.95719 1.21666 0.73720 0.88021 0.81258 1.90756 1.51918 1.66533 1.33710 1.86641 1.76049 1.30071 1.33950 1.23303 1.00984 0.78364 0.97425 1.22756 0.88178 1.01309 0.90276 1.87930 1.31517 1.87714 1.25618 1.20370 0.95828 0.93745 0.79771 1.21177 0.93949 1.45778 0.97751 0.95536 1.25891 1.00641 0.94481 0.97613 1.70042 1.26922 1.48304 1.12997 0.85565 0.78563 0.79215 0.78722 1.18292 1.19939 1.16468 1.20617 1.04465 0.94534 0.97137 1.17363 0.93892 0.90534 0.87861 1.42430 1.75500 1.17785 1.04725 0.93403 0.90605 0.92883 0.89498 0.89624 0.83232 0.85586 0.91362 0.86975 0.88855 0.91418 0.96335 0.96662 0.91768 0.84866 0.76340 0.75855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.89 71.98 0.71 -0.92 16 2 C -0.08 -0.85 5.50 29.85 0.16 -0.69 16 3 C -0.12 -2.21 5.16 -19.68 -0.10 -2.31 16 4 C -0.09 -1.80 9.65 22.21 0.21 -1.59 16 5 C -0.13 -3.42 9.61 22.55 0.22 -3.20 16 6 C -0.10 -3.03 5.87 -20.11 -0.12 -3.15 16 7 C 0.51 17.24 7.90 70.33 0.56 17.79 16 8 O -0.54 -19.55 16.13 19.92 0.32 -19.23 16 9 O -0.35 -12.50 9.44 -53.58 -0.51 -13.00 16 10 C 0.07 2.29 5.85 71.98 0.42 2.71 16 11 C 0.05 1.72 6.33 71.98 0.46 2.18 16 12 O -0.41 -19.44 10.30 -145.57 -1.50 -20.93 16 13 C 0.18 8.98 4.76 71.24 0.34 9.31 16 14 C -0.55 -33.98 9.99 25.60 0.26 -33.73 16 15 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 16 C 0.01 0.69 5.47 84.66 0.46 1.15 16 17 N -0.94 -59.95 13.96 21.45 0.30 -59.65 16 18 Si 0.96 43.16 27.47 68.60 1.88 45.05 16 19 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 22 C -0.14 -3.52 9.44 22.68 0.21 -3.30 16 23 C 0.21 3.90 6.73 38.17 0.26 4.16 16 24 N -0.86 -9.53 8.99 -51.45 -0.46 -10.00 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.09 0.82 8.05 -2.39 -0.02 0.80 16 29 H 0.09 0.63 6.78 -2.39 -0.02 0.62 16 30 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.13 3.69 7.60 -2.91 -0.02 3.67 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 37 H 0.02 0.73 7.57 -2.38 -0.02 0.72 16 38 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 39 H 0.13 3.15 7.65 -2.91 -0.02 3.13 16 40 H 0.41 3.45 8.84 -92.71 -0.82 2.63 16 41 H 0.41 2.80 6.91 -92.71 -0.64 2.16 16 Total: -1.00 -78.27 351.19 3.62 -74.65 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -0.46 Total: 14.71 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: 4.05 Total: -11.59 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -0.16 Total: -69.65 kcal Atomic # 8 Polarization: -51.48 SS G_CDS: -1.68 Total: -53.17 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.05 kcal Total: -78.27 3.62 -74.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815213333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.751 kcal (2) G-P(sol) polarization free energy of solvation -78.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds