Wall clock time and date at job start Tue Mar 31 2020 06:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38622 * 119.78666 * 2 1 4 4 C 1.37720 * 120.36393 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.04164 * 179.97438 * 4 3 2 6 6 C 1.39798 * 119.92161 * 359.97438 * 4 3 2 7 7 C 1.47291 * 120.21493 * 180.02562 * 6 4 3 8 8 O 1.21523 * 120.00344 * 89.99507 * 7 6 4 9 9 O 1.34768 * 119.99475 * 269.71619 * 7 6 4 10 10 C 1.45202 * 116.99616 * 180.27188 * 9 7 6 11 11 C 1.53008 * 109.46857 * 180.02562 * 10 9 7 12 12 O 1.42904 * 109.47001 * 65.00493 * 11 10 9 13 13 C 1.42897 * 113.99910 * 179.97438 * 12 11 10 14 14 C 1.50693 * 109.47092 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00149 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00036 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99988 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00033 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47146 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47163 * 120.00068 * 18 16 14 21 21 H 1.48500 * 109.46993 * 240.00002 * 18 16 14 22 22 C 1.40412 * 119.56954 * 0.26450 * 6 4 3 23 23 N 1.38826 * 120.17830 * 179.70883 * 22 6 4 24 24 C 1.37951 * 119.77957 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47048 * 89.99325 * 1 2 3 26 26 H 1.08991 * 109.47225 * 209.99738 * 1 2 3 27 27 H 1.08999 * 109.46519 * 329.99950 * 1 2 3 28 28 H 1.08002 * 119.81534 * 359.97438 * 3 2 1 29 29 H 1.08992 * 109.47466 * 270.03091 * 5 4 3 30 30 H 1.09004 * 109.46689 * 30.03084 * 5 4 3 31 31 H 1.08998 * 109.47173 * 150.02435 * 5 4 3 32 32 H 1.08998 * 109.47630 * 300.00499 * 10 9 7 33 33 H 1.09004 * 109.46770 * 60.00903 * 10 9 7 34 34 H 1.09001 * 109.47033 * 185.00650 * 11 10 9 35 35 H 1.08996 * 109.47089 * 305.00185 * 11 10 9 36 36 H 1.09005 * 109.46982 * 300.00315 * 13 12 11 37 37 H 1.09000 * 109.47160 * 59.99814 * 13 12 11 38 38 H 0.96997 * 119.99564 * 179.97438 * 17 16 14 39 39 H 0.97000 * 119.99763 * 359.97438 * 23 22 6 40 40 H 0.96998 * 119.99976 * 179.97438 * 23 22 6 41 41 H 1.08007 * 119.96570 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2031 0.0000 4 6 3.5728 1.2170 0.0005 5 6 4.3141 2.5290 -0.0001 6 6 4.2823 0.0124 0.0016 7 6 5.7552 0.0197 0.0028 8 8 6.3621 0.0233 1.0556 9 8 6.4299 0.0167 -1.1639 10 6 7.8798 0.0182 -1.0868 11 6 8.4657 0.0151 -2.5003 12 8 8.1211 1.2342 -3.1614 13 6 8.6229 1.3337 -4.4957 14 6 8.2016 2.6511 -5.0938 15 1 7.6101 3.3435 -4.5129 16 6 8.5712 2.9727 -6.3826 17 7 9.2918 2.1299 -7.0898 18 14 8.0495 4.6062 -7.1238 19 1 7.2517 5.3685 -6.1300 20 1 9.2556 5.3885 -7.4961 21 1 7.2261 4.3598 -8.3347 22 6 3.5817 -1.2044 -0.0035 23 7 4.2736 -2.4080 -0.0086 24 6 2.1922 -1.1973 0.0005 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5137 27 1 -0.3632 0.8900 0.5139 28 1 1.6492 2.1346 -0.0004 29 1 4.4927 2.8450 -1.0278 30 1 3.7179 3.2833 0.5135 31 1 5.2676 2.4079 0.5138 32 1 8.2147 0.9100 -0.5570 33 1 8.2161 -0.8700 -0.5518 34 1 9.5506 -0.0735 -2.4437 35 1 8.0610 -0.8285 -3.0594 36 1 9.7111 1.2727 -4.4801 37 1 8.2218 0.5175 -5.0965 38 1 9.5514 2.3561 -7.9966 39 1 5.2436 -2.4098 -0.0090 40 1 3.7870 -3.2471 -0.0117 41 1 1.6480 -2.1303 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815215367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:49 Heat of formation + Delta-G solvation = -146.485504 kcal Electronic energy + Delta-G solvation = -23017.673176 eV Core-core repulsion = 19475.020554 eV Total energy + Delta-G solvation = -3542.652622 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.86722 -40.20487 -38.73863 -37.40860 -36.20209 -34.96692 -34.55956 -31.79020 -30.60118 -29.18467 -28.46423 -28.03386 -24.69224 -24.32587 -23.14452 -22.51182 -21.41659 -19.16122 -18.73231 -18.46925 -18.03112 -17.71786 -17.23357 -16.81592 -16.39216 -16.26615 -15.69076 -15.50775 -15.07369 -14.95893 -14.47994 -14.21871 -14.13245 -14.03688 -13.76033 -13.41422 -13.32846 -13.24562 -12.92098 -12.80535 -12.74265 -12.66996 -12.46328 -12.18664 -12.02993 -11.80064 -11.57991 -11.28814 -11.27839 -10.91950 -10.30032 -9.64209 -8.61685 -8.33945 -6.46112 0.10625 0.56827 0.90887 1.39619 1.40983 1.55817 1.65865 2.33653 2.69510 2.76273 3.00031 3.02365 3.60041 3.71816 3.86390 3.89345 4.05034 4.28460 4.34791 4.36044 4.43471 4.46983 4.59316 4.59877 4.64222 4.68852 4.82186 4.92074 4.96376 5.00429 5.13521 5.15480 5.22267 5.31651 5.49744 5.53000 5.67401 5.86964 5.93174 6.31452 6.46872 6.56065 6.74071 6.77561 7.25565 8.78585 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015586 B = 0.003547 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.023700 B = 7891.639876 C = 8824.532848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.013 4.013 3 C -0.188 4.188 4 C -0.007 4.007 5 C -0.125 4.125 6 C -0.237 4.237 7 C 0.527 3.473 8 O -0.529 6.529 9 O -0.352 6.352 10 C 0.072 3.928 11 C 0.055 3.945 12 O -0.409 6.409 13 C 0.208 3.792 14 C -0.550 4.550 15 H 0.059 0.941 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.983 3.017 19 H -0.265 1.265 20 H -0.270 1.270 21 H -0.270 1.270 22 C 0.258 3.742 23 N -0.859 5.859 24 C -0.211 4.211 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.148 0.852 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.055 0.945 36 H -0.007 1.007 37 H -0.012 1.012 38 H 0.271 0.729 39 H 0.395 0.605 40 H 0.418 0.582 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.395 -8.108 15.519 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.014 4.014 3 C -0.208 4.208 4 C -0.008 4.008 5 C -0.182 4.182 6 C -0.244 4.244 7 C 0.372 3.628 8 O -0.419 6.419 9 O -0.268 6.268 10 C -0.001 4.001 11 C -0.022 4.022 12 O -0.330 6.330 13 C 0.134 3.866 14 C -0.588 4.588 15 H 0.078 0.922 16 C -0.191 4.191 17 N -0.568 5.568 18 Si 0.805 3.195 19 H -0.189 1.189 20 H -0.195 1.195 21 H -0.195 1.195 22 C 0.149 3.851 23 N -0.397 5.397 24 C -0.233 4.233 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.166 0.834 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.011 0.989 37 H 0.006 0.994 38 H 0.080 0.920 39 H 0.223 0.777 40 H 0.249 0.751 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.205 -7.999 15.730 23.958 hybrid contribution 1.075 0.019 -0.637 1.250 sum -15.129 -7.980 15.093 22.812 Atomic orbital electron populations 1.20931 0.88241 1.04341 1.03642 1.20217 0.97813 0.91788 0.91549 1.20856 0.91766 0.99387 1.08769 1.19805 0.94720 0.92820 0.93450 1.20943 0.99601 0.94628 1.03007 1.18533 0.87852 0.95083 1.22896 1.21458 0.89366 0.70691 0.81306 1.90805 1.71040 1.46705 1.33373 1.86829 1.22724 1.82909 1.34301 1.23292 0.75881 1.03958 0.96991 1.22641 0.99343 0.88472 0.91748 1.87870 1.77612 1.38024 1.29448 1.19873 0.92366 0.96343 0.78060 1.21407 1.34867 1.03085 0.99403 0.92249 1.25945 0.94504 1.01974 0.96654 1.70066 1.37732 1.37945 1.11096 0.85146 0.78464 0.77698 0.78174 1.18940 1.19477 1.19531 1.17681 0.92175 0.84745 0.90461 1.42332 1.09230 1.05386 1.82768 1.20686 0.90180 0.99973 1.12446 0.89733 0.89812 0.90040 0.83447 0.90765 0.87968 0.93657 0.91062 0.86945 0.89739 0.92629 0.98902 0.99427 0.91961 0.77709 0.75061 0.82653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 10.00 71.24 0.71 -0.50 16 2 C -0.01 -0.23 5.88 -19.84 -0.12 -0.35 16 3 C -0.19 -4.05 9.32 22.24 0.21 -3.84 16 4 C -0.01 -0.20 5.91 -19.61 -0.12 -0.31 16 5 C -0.13 -3.38 9.62 71.24 0.69 -2.70 16 6 C -0.24 -7.16 5.77 -19.99 -0.12 -7.27 16 7 C 0.53 17.92 4.60 70.20 0.32 18.24 16 8 O -0.53 -19.39 16.90 19.76 0.33 -19.05 16 9 O -0.35 -12.83 10.20 -54.13 -0.55 -13.38 16 10 C 0.07 2.36 5.86 71.98 0.42 2.78 16 11 C 0.05 2.05 6.33 71.98 0.46 2.51 16 12 O -0.41 -20.71 10.30 -145.58 -1.50 -22.21 16 13 C 0.21 11.88 5.69 71.23 0.41 12.28 16 14 C -0.55 -33.39 9.43 25.60 0.24 -33.15 16 15 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 16 C 0.01 0.46 5.46 84.65 0.46 0.92 16 17 N -0.93 -55.96 13.29 21.45 0.28 -55.68 16 18 Si 0.98 44.74 29.54 68.60 2.03 46.76 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 C 0.26 6.23 6.77 38.74 0.26 6.49 16 23 N -0.86 -16.38 8.99 -50.93 -0.46 -16.83 16 24 C -0.21 -3.98 9.52 22.37 0.21 -3.77 16 25 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 27 H 0.08 0.70 8.08 -2.39 -0.02 0.68 16 28 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 29 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.10 2.08 8.09 -2.39 -0.02 2.06 16 31 H 0.04 1.38 7.08 -2.39 -0.02 1.36 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.11 2.87 8.14 -2.38 -0.02 2.85 16 34 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 37 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.40 8.14 7.68 -92.71 -0.71 7.43 16 40 H 0.42 5.05 8.83 -92.71 -0.82 4.23 16 41 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -75.51 355.89 3.70 -71.81 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -0.48 Total: 17.25 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 4.04 Total: -8.67 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -0.17 Total: -72.51 kcal Atomic # 8 Polarization: -52.93 SS G_CDS: -1.72 Total: -54.65 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -75.51 3.70 -71.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815215367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.674 kcal (2) G-P(sol) polarization free energy of solvation -75.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds