Wall clock time and date at job start Tue Mar 31 2020 06:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46629 * 2 1 4 4 C 1.50691 * 109.47153 * 120.00218 * 2 1 3 5 5 C 1.38368 * 119.45550 * 274.99994 * 4 2 1 6 6 C 1.38345 * 119.30788 * 179.97438 * 5 4 2 7 7 C 1.40068 * 118.28385 * 0.02562 * 6 5 4 8 8 C 1.47723 * 120.56295 * 179.97438 * 7 6 5 9 9 O 1.21472 * 120.00258 * 359.97438 * 8 7 6 10 10 O 1.34707 * 120.00107 * 179.97438 * 8 7 6 11 11 C 1.45202 * 117.00231 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47429 * 180.02562 * 11 10 8 13 13 O 1.42906 * 109.47100 * 64.99925 * 12 11 10 14 14 C 1.42899 * 114.00075 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47084 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00407 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00011 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00027 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00026 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.46901 * 90.00364 * 19 17 15 21 21 H 1.48501 * 109.47247 * 210.00490 * 19 17 15 22 22 H 1.48504 * 109.46987 * 330.00534 * 19 17 15 23 23 C 1.39570 * 118.87594 * 359.97438 * 7 6 5 24 24 N 1.31690 * 120.55863 * 0.02562 * 23 7 6 25 25 H 1.09000 * 109.46968 * 299.99212 * 1 2 3 26 26 H 1.08998 * 109.47368 * 59.99844 * 1 2 3 27 27 H 1.09001 * 109.46745 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46968 * 240.00788 * 2 1 3 29 29 H 1.09001 * 109.46928 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47372 * 300.00153 * 3 2 1 31 31 H 1.09008 * 109.47073 * 60.00651 * 3 2 1 32 32 H 1.07996 * 120.34384 * 0.25240 * 5 4 2 33 33 H 1.08001 * 120.85562 * 180.02562 * 6 5 4 34 34 H 1.09003 * 109.47343 * 300.00388 * 11 10 8 35 35 H 1.08995 * 109.47104 * 60.00046 * 11 10 8 36 36 H 1.08995 * 109.47675 * 184.99841 * 12 11 10 37 37 H 1.08999 * 109.47186 * 305.00118 * 12 11 10 38 38 H 1.08998 * 109.47600 * 300.00254 * 14 13 12 39 39 H 1.09005 * 109.46765 * 60.00358 * 14 13 12 40 40 H 0.97001 * 119.99841 * 179.97438 * 18 17 15 41 41 H 1.08004 * 119.72430 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.1602 -0.0093 2.4164 6 6 2.6212 -0.6646 3.5442 7 6 2.9428 -2.0237 3.4371 8 6 3.4400 -2.7725 4.6094 9 8 3.5733 -2.2098 5.6777 10 8 3.7455 -4.0794 4.4939 11 6 4.2288 -4.7514 5.6868 12 6 4.5217 -6.2177 5.3629 13 8 5.5971 -6.2928 4.4247 14 6 5.9526 -7.6261 4.0534 15 6 7.0909 -7.5862 3.0668 16 1 7.5022 -6.6375 2.7547 17 6 7.6075 -8.7608 2.5623 18 7 8.6013 -8.7260 1.7016 19 14 6.8969 -10.4017 3.1025 20 1 5.7908 -10.7867 2.1895 21 1 7.9584 -11.4393 3.0592 22 1 6.3764 -10.2836 4.4884 23 6 2.7858 -2.6584 2.2041 24 7 2.3431 -1.9906 1.1589 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9564 0.8901 32 1 1.8986 1.0375 2.4623 33 1 2.7301 -0.1418 4.4829 34 1 5.1420 -4.2666 6.0322 35 1 3.4704 -4.6959 6.4676 36 1 4.7994 -6.7433 6.2765 37 1 3.6325 -6.6797 4.9339 38 1 6.2601 -8.1805 4.9401 39 1 5.0931 -8.1176 3.5975 40 1 8.9650 -9.5524 1.3470 41 1 3.0301 -3.7058 2.1060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815221829.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:15 Heat of formation + Delta-G solvation = -107.479376 kcal Electronic energy + Delta-G solvation = -22401.228883 eV Core-core repulsion = 18860.267694 eV Total energy + Delta-G solvation = -3540.961189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.99628 -39.88951 -37.26857 -36.19678 -35.87837 -32.83947 -32.70758 -31.16168 -30.03306 -27.62714 -27.57259 -25.40580 -23.78388 -22.66983 -21.90724 -21.58214 -20.54415 -18.32644 -17.32478 -16.88250 -16.55559 -16.45156 -16.11833 -15.43639 -15.06941 -14.84251 -14.64024 -14.43823 -14.21190 -13.71361 -13.37017 -13.27604 -13.09185 -12.90748 -12.55988 -12.46817 -12.42440 -11.76046 -11.61890 -11.54769 -11.33699 -11.19881 -10.93113 -10.74297 -10.58599 -10.53434 -10.19718 -9.88667 -9.67681 -9.30897 -9.21984 -8.92895 -8.52336 -6.12827 -4.12336 0.30580 0.96844 2.42075 2.59293 3.23703 3.30613 3.31160 3.54300 3.81955 4.29935 4.33696 4.43197 4.55331 4.59918 4.69839 4.72755 4.78907 4.85495 5.09872 5.16632 5.18182 5.24619 5.34159 5.39749 5.43063 5.50627 5.57120 5.65567 5.71111 5.74682 5.81896 5.86646 5.94121 5.96548 6.30900 6.42413 6.53638 6.94963 7.56006 7.62532 7.72909 7.93582 8.61861 8.98610 9.45706 11.00178 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.002961 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.852630 B = 9453.204578 C =10518.907961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 C -0.149 4.149 4 C 0.166 3.834 5 C -0.186 4.186 6 C -0.010 4.010 7 C -0.183 4.183 8 C 0.515 3.485 9 O -0.512 6.512 10 O -0.335 6.335 11 C 0.076 3.924 12 C 0.057 3.943 13 O -0.375 6.375 14 C 0.168 3.832 15 C -0.520 4.520 16 H 0.083 0.917 17 C 0.072 3.928 18 N -0.894 5.894 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.266 1.266 23 C 0.171 3.829 24 N -0.488 5.488 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.004 0.996 39 H 0.001 0.999 40 H 0.267 0.733 41 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.714 18.209 1.520 25.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 C -0.206 4.206 4 C 0.028 3.972 5 C -0.205 4.205 6 C -0.036 4.036 7 C -0.186 4.186 8 C 0.359 3.641 9 O -0.402 6.402 10 O -0.251 6.251 11 C 0.002 3.998 12 C -0.021 4.021 13 O -0.295 6.295 14 C 0.093 3.907 15 C -0.558 4.558 16 H 0.101 0.899 17 C -0.130 4.130 18 N -0.533 5.533 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.191 1.191 23 C 0.013 3.987 24 N -0.196 5.196 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.022 0.978 39 H 0.019 0.981 40 H 0.077 0.923 41 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -17.522 17.932 0.868 25.086 hybrid contribution -0.167 -0.837 1.373 1.616 sum -17.689 17.095 2.241 24.702 Atomic orbital electron populations 1.21804 0.93228 1.02602 1.02257 1.20161 0.96438 0.95570 0.95002 1.21946 1.01639 0.94593 1.02460 1.21611 0.90916 0.89882 0.94752 1.21942 1.03695 1.02019 0.92891 1.21712 0.90416 0.92049 0.99399 1.20193 1.08830 0.95165 0.94416 1.20853 0.74402 0.81187 0.87636 1.90812 1.50537 1.69807 1.29086 1.86621 1.75311 1.22613 1.40562 1.23232 0.99645 0.92321 0.84562 1.22409 0.92355 0.92773 0.94537 1.87982 1.50205 1.30360 1.60919 1.20637 0.95462 0.79611 0.94952 1.20874 1.15347 0.95607 1.23975 0.89916 1.24772 0.94760 0.98788 0.94636 1.69875 1.25120 1.27993 1.30269 0.86846 0.79277 0.83902 0.79682 1.19858 1.20765 1.19123 1.23400 0.88512 1.00698 0.86129 1.67675 1.12199 1.08390 1.31377 0.92451 0.91602 0.92072 0.88661 0.92103 0.91568 0.92071 0.83742 0.83402 0.90122 0.90093 0.91655 0.92927 0.97835 0.98124 0.92319 0.80511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.18 37.16 0.34 -0.57 16 2 C -0.05 -0.41 3.23 -91.77 -0.30 -0.70 16 3 C -0.15 -0.86 8.62 37.16 0.32 -0.54 16 4 C 0.17 1.71 5.79 -82.51 -0.48 1.23 16 5 C -0.19 -1.68 9.16 -39.49 -0.36 -2.04 16 6 C -0.01 -0.11 9.72 -38.86 -0.38 -0.49 16 7 C -0.18 -2.39 5.89 -104.84 -0.62 -3.00 16 8 C 0.51 7.77 7.91 34.61 0.27 8.05 16 9 O -0.51 -8.41 16.21 -19.24 -0.31 -8.72 16 10 O -0.34 -5.41 9.47 -43.29 -0.41 -5.82 16 11 C 0.08 1.14 5.85 37.16 0.22 1.35 16 12 C 0.06 0.95 6.33 37.16 0.24 1.19 16 13 O -0.38 -8.66 10.30 -38.79 -0.40 -9.06 16 14 C 0.17 4.23 4.76 36.00 0.17 4.40 16 15 C -0.52 -15.48 9.99 -34.44 -0.34 -15.82 16 16 H 0.08 2.71 8.06 -52.49 -0.42 2.28 16 17 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 18 N -0.89 -27.63 13.96 55.43 0.77 -26.86 16 19 Si 0.88 21.24 27.47 -169.99 -4.67 16.58 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 23 C 0.17 2.26 10.79 -17.12 -0.18 2.07 16 24 N -0.49 -6.29 10.25 -9.12 -0.09 -6.39 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.29 6.48 -51.92 -0.34 -0.05 16 32 H 0.14 0.87 6.29 -52.49 -0.33 0.54 16 33 H 0.15 1.38 7.74 -52.49 -0.41 0.98 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.00 0.10 7.20 -51.93 -0.37 -0.28 16 39 H 0.00 0.03 7.57 -51.93 -0.39 -0.37 16 40 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.18 2.33 7.62 -52.48 -0.40 1.93 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -34.15 351.76 -7.06 -41.21 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -6.06 Total: -3.42 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -1.20 Total: -2.83 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.68 Total: -33.24 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -1.12 Total: -23.60 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.15 -7.06 -41.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815221829.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.267 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds