Wall clock time and date at job start Tue Mar 31 2020 06:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46629 * 2 1 4 4 C 1.50691 * 109.47153 * 120.00218 * 2 1 3 5 5 C 1.38368 * 119.45550 * 274.99994 * 4 2 1 6 6 C 1.38345 * 119.30788 * 179.97438 * 5 4 2 7 7 C 1.40068 * 118.28385 * 0.02562 * 6 5 4 8 8 C 1.47723 * 120.56295 * 179.97438 * 7 6 5 9 9 O 1.21472 * 120.00258 * 359.97438 * 8 7 6 10 10 O 1.34707 * 120.00107 * 179.97438 * 8 7 6 11 11 C 1.45202 * 117.00231 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47429 * 180.02562 * 11 10 8 13 13 O 1.42906 * 109.47100 * 64.99925 * 12 11 10 14 14 C 1.42899 * 114.00075 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47084 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00407 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00011 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00027 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00026 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.46901 * 90.00364 * 19 17 15 21 21 H 1.48501 * 109.47247 * 210.00490 * 19 17 15 22 22 H 1.48504 * 109.46987 * 330.00534 * 19 17 15 23 23 C 1.39570 * 118.87594 * 359.97438 * 7 6 5 24 24 N 1.31690 * 120.55863 * 0.02562 * 23 7 6 25 25 H 1.09000 * 109.46968 * 299.99212 * 1 2 3 26 26 H 1.08998 * 109.47368 * 59.99844 * 1 2 3 27 27 H 1.09001 * 109.46745 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46968 * 240.00788 * 2 1 3 29 29 H 1.09001 * 109.46928 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47372 * 300.00153 * 3 2 1 31 31 H 1.09008 * 109.47073 * 60.00651 * 3 2 1 32 32 H 1.07996 * 120.34384 * 0.25240 * 5 4 2 33 33 H 1.08001 * 120.85562 * 180.02562 * 6 5 4 34 34 H 1.09003 * 109.47343 * 300.00388 * 11 10 8 35 35 H 1.08995 * 109.47104 * 60.00046 * 11 10 8 36 36 H 1.08995 * 109.47675 * 184.99841 * 12 11 10 37 37 H 1.08999 * 109.47186 * 305.00118 * 12 11 10 38 38 H 1.08998 * 109.47600 * 300.00254 * 14 13 12 39 39 H 1.09005 * 109.46765 * 60.00358 * 14 13 12 40 40 H 0.97001 * 119.99841 * 179.97438 * 18 17 15 41 41 H 1.08004 * 119.72430 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.1602 -0.0093 2.4164 6 6 2.6212 -0.6646 3.5442 7 6 2.9428 -2.0237 3.4371 8 6 3.4400 -2.7725 4.6094 9 8 3.5733 -2.2098 5.6777 10 8 3.7455 -4.0794 4.4939 11 6 4.2288 -4.7514 5.6868 12 6 4.5217 -6.2177 5.3629 13 8 5.5971 -6.2928 4.4247 14 6 5.9526 -7.6261 4.0534 15 6 7.0909 -7.5862 3.0668 16 1 7.5022 -6.6375 2.7547 17 6 7.6075 -8.7608 2.5623 18 7 8.6013 -8.7260 1.7016 19 14 6.8969 -10.4017 3.1025 20 1 5.7908 -10.7867 2.1895 21 1 7.9584 -11.4393 3.0592 22 1 6.3764 -10.2836 4.4884 23 6 2.7858 -2.6584 2.2041 24 7 2.3431 -1.9906 1.1589 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9564 0.8901 32 1 1.8986 1.0375 2.4623 33 1 2.7301 -0.1418 4.4829 34 1 5.1420 -4.2666 6.0322 35 1 3.4704 -4.6959 6.4676 36 1 4.7994 -6.7433 6.2765 37 1 3.6325 -6.6797 4.9339 38 1 6.2601 -8.1805 4.9401 39 1 5.0931 -8.1176 3.5975 40 1 8.9650 -9.5524 1.3470 41 1 3.0301 -3.7058 2.1060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815221829.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:14 Heat of formation + Delta-G solvation = -129.444232 kcal Electronic energy + Delta-G solvation = -22402.181350 eV Core-core repulsion = 18860.267694 eV Total energy + Delta-G solvation = -3541.913657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.99930 -40.94837 -38.83370 -37.53077 -36.58559 -34.89938 -33.73820 -32.26838 -31.29812 -29.56140 -28.05159 -26.34227 -24.68748 -24.07441 -23.73455 -22.63869 -21.35834 -19.40596 -19.12797 -18.28614 -17.95597 -17.36122 -17.06122 -17.03870 -16.43901 -16.31868 -15.78838 -15.45669 -15.03322 -14.91607 -14.64474 -14.35792 -14.24049 -14.03451 -13.86822 -13.60150 -13.36765 -13.01626 -12.87971 -12.66386 -12.37250 -12.26507 -12.09166 -11.96786 -11.88333 -11.76335 -11.72761 -11.36449 -11.08736 -10.94023 -10.58082 -10.41406 -10.17996 -8.37623 -6.46254 -0.64178 0.10436 1.32532 1.34046 1.37737 1.48244 1.49082 2.29652 2.62419 2.93958 2.95345 3.01792 3.51967 3.56501 3.71203 3.86331 3.90377 4.06395 4.10940 4.14592 4.25340 4.35448 4.47493 4.50493 4.54799 4.64684 4.68280 4.81094 4.85658 4.88096 4.98831 4.99543 5.02552 5.19984 5.25133 5.35956 5.41353 5.42182 5.48614 5.90344 6.50601 6.57906 6.70309 6.78213 7.18011 8.79781 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.002961 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.852630 B = 9453.204578 C =10518.907961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.053 4.053 3 C -0.146 4.146 4 C 0.160 3.840 5 C -0.171 4.171 6 C -0.009 4.009 7 C -0.200 4.200 8 C 0.516 3.484 9 O -0.529 6.529 10 O -0.352 6.352 11 C 0.074 3.926 12 C 0.049 3.951 13 O -0.408 6.408 14 C 0.179 3.821 15 C -0.549 4.549 16 H 0.026 0.974 17 C 0.011 3.989 18 N -0.944 5.944 19 Si 0.959 3.041 20 H -0.259 1.259 21 H -0.274 1.274 22 H -0.240 1.240 23 C 0.158 3.842 24 N -0.514 5.514 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.183 0.817 33 H 0.164 0.836 34 H 0.071 0.929 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.020 0.980 39 H 0.015 0.985 40 H 0.273 0.727 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.033 18.573 2.659 27.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.072 4.072 3 C -0.203 4.203 4 C 0.023 3.977 5 C -0.190 4.190 6 C -0.034 4.034 7 C -0.203 4.203 8 C 0.362 3.638 9 O -0.421 6.421 10 O -0.268 6.268 11 C 0.001 3.999 12 C -0.027 4.027 13 O -0.328 6.328 14 C 0.103 3.897 15 C -0.586 4.586 16 H 0.045 0.955 17 C -0.187 4.187 18 N -0.583 5.583 19 Si 0.779 3.221 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.163 1.163 23 C 0.000 4.000 24 N -0.223 5.223 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.200 0.800 33 H 0.181 0.819 34 H 0.089 0.911 35 H 0.133 0.867 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.082 0.918 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -19.854 18.320 2.018 27.090 hybrid contribution 0.559 -0.782 0.941 1.345 sum -19.295 17.538 2.958 26.242 Atomic orbital electron populations 1.21793 0.92024 1.01976 1.03718 1.20273 0.97318 0.96468 0.93169 1.21949 1.01105 0.93130 1.04112 1.22205 0.89905 0.89182 0.96443 1.22312 1.01767 1.03464 0.91464 1.21974 0.89774 0.91002 1.00667 1.20193 1.10366 0.96247 0.93524 1.21163 0.73822 0.80767 0.88039 1.90787 1.51591 1.69926 1.29774 1.86621 1.75467 1.23406 1.41349 1.23331 1.00371 0.91156 0.85001 1.22779 0.91036 0.94447 0.94446 1.87926 1.52663 1.29314 1.62866 1.20361 0.94078 0.80991 0.94257 1.21181 1.17534 0.93893 1.26036 0.95546 1.25902 0.94819 1.03811 0.94174 1.70044 1.26818 1.29778 1.31675 0.85566 0.78791 0.77069 0.80643 1.18401 1.19955 1.16337 1.23250 0.89488 1.00547 0.86690 1.67673 1.13156 1.10000 1.31436 0.91302 0.89832 0.93751 0.89932 0.92950 0.90053 0.90342 0.79956 0.81877 0.91091 0.86694 0.88811 0.91426 0.96269 0.96702 0.91781 0.81767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.18 71.99 0.66 -0.85 16 2 C -0.05 -0.74 3.23 -11.54 -0.04 -0.78 16 3 C -0.15 -1.29 8.62 71.98 0.62 -0.66 16 4 C 0.16 3.16 5.79 42.57 0.25 3.40 16 5 C -0.17 -2.72 9.16 22.33 0.20 -2.51 16 6 C -0.01 -0.18 9.72 22.74 0.22 0.04 16 7 C -0.20 -5.29 5.89 -20.01 -0.12 -5.41 16 8 C 0.52 15.80 7.91 70.33 0.56 16.36 16 9 O -0.53 -17.25 16.21 19.93 0.32 -16.93 16 10 O -0.35 -11.57 9.47 -53.51 -0.51 -12.07 16 11 C 0.07 2.18 5.85 71.98 0.42 2.60 16 12 C 0.05 1.58 6.33 71.98 0.46 2.04 16 13 O -0.41 -18.95 10.30 -145.58 -1.50 -20.45 16 14 C 0.18 8.88 4.76 71.23 0.34 9.22 16 15 C -0.55 -33.81 9.99 25.60 0.26 -33.55 16 16 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 17 C 0.01 0.64 5.47 84.66 0.46 1.10 16 18 N -0.94 -60.07 13.96 21.45 0.30 -59.77 16 19 Si 0.96 43.11 27.47 68.60 1.88 45.00 16 20 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.24 -9.74 6.54 99.48 0.65 -9.08 16 23 C 0.16 4.39 10.79 85.04 0.92 5.31 16 24 N -0.51 -13.60 10.25 -182.77 -1.87 -15.48 16 25 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 27 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.50 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.42 6.48 -2.38 -0.02 0.41 16 32 H 0.18 1.45 6.29 -2.91 -0.02 1.44 16 33 H 0.16 2.74 7.74 -2.91 -0.02 2.72 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 39 H 0.02 0.71 7.57 -2.38 -0.02 0.69 16 40 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 41 H 0.17 4.77 7.62 -2.91 -0.02 4.75 16 Total: -1.00 -77.68 351.76 4.80 -72.89 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.96 Total: 10.51 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 5.21 Total: -3.70 kcal Atomic # 7 Polarization: -73.67 SS G_CDS: -1.57 Total: -75.24 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -1.68 Total: -49.45 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.88 Total: 45.00 kcal Total: -77.68 4.80 -72.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815221829.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.555 kcal (2) G-P(sol) polarization free energy of solvation -77.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds