Wall clock time and date at job start Tue Mar 31 2020 06:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37997 * 119.77789 * 2 1 4 4 C 1.38914 * 120.06598 * 180.02562 * 3 2 1 5 5 N 1.38843 * 120.17702 * 179.97438 * 4 3 2 6 6 C 1.40442 * 119.64658 * 359.97434 * 4 3 2 7 7 C 1.47293 * 120.21900 * 180.02562 * 6 4 3 8 8 O 1.21524 * 119.99674 * 5.60880 * 7 6 4 9 9 O 1.34766 * 119.99932 * 185.61072 * 7 6 4 10 10 C 1.45200 * 116.99479 * 180.02562 * 9 7 6 11 11 C 1.53009 * 109.47052 * 179.97438 * 10 9 7 12 12 O 1.42900 * 109.47043 * 64.99656 * 11 10 9 13 13 C 1.42900 * 113.99997 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47115 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99833 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99660 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00226 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99685 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46926 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47118 * 119.99646 * 18 16 14 21 21 H 1.48499 * 109.47076 * 240.00229 * 18 16 14 22 22 C 1.39759 * 119.56867 * 359.73332 * 6 4 3 23 23 C 1.37763 * 119.92169 * 0.54082 * 22 6 4 24 24 C 1.50700 * 119.82433 * 179.75026 * 23 22 6 25 25 H 1.08996 * 109.47131 * 270.01922 * 1 2 3 26 26 H 1.08993 * 109.47606 * 30.02470 * 1 2 3 27 27 H 1.09008 * 109.46769 * 150.02524 * 1 2 3 28 28 H 1.07999 * 119.96833 * 359.97438 * 3 2 1 29 29 H 0.97000 * 120.00228 * 24.85178 * 5 4 3 30 30 H 0.97005 * 119.99862 * 204.84034 * 5 4 3 31 31 H 1.09001 * 109.47398 * 299.99462 * 10 9 7 32 32 H 1.09002 * 109.47636 * 60.00011 * 10 9 7 33 33 H 1.08998 * 109.47017 * 185.00164 * 11 10 9 34 34 H 1.09004 * 109.46437 * 305.00109 * 11 10 9 35 35 H 1.08994 * 109.47280 * 300.01061 * 13 12 11 36 36 H 1.09011 * 109.46726 * 60.00121 * 13 12 11 37 37 H 0.96993 * 120.00324 * 180.02562 * 17 16 14 38 38 H 1.07998 * 120.04293 * 180.27709 * 22 6 4 39 39 H 1.08997 * 109.47289 * 269.72829 * 24 23 22 40 40 H 1.09004 * 109.47184 * 149.72283 * 24 23 22 41 41 H 1.08998 * 109.46605 * 29.72616 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1923 1.1978 0.0000 4 6 3.5814 1.2047 -0.0005 5 7 4.2733 2.4085 -0.0011 6 6 4.2822 -0.0123 -0.0005 7 6 5.7552 -0.0196 -0.0005 8 8 6.3679 1.0248 0.1023 9 8 6.4232 -1.1845 -0.1146 10 6 7.8736 -1.1160 -0.1066 11 6 8.4515 -2.5260 -0.2443 12 8 8.1052 -3.0599 -1.5238 13 6 8.5997 -4.3804 -1.7558 14 6 8.1783 -4.8408 -3.1275 15 1 7.5919 -4.1900 -3.7590 16 6 8.5414 -6.0930 -3.5760 17 7 9.2550 -6.8858 -2.8067 18 14 8.0197 -6.6635 -5.2766 19 1 7.2294 -5.5935 -5.9368 20 1 9.2255 -6.9624 -6.0900 21 1 7.1887 -7.8882 -5.1545 22 6 3.5730 -1.2166 0.0057 23 6 2.1954 -1.2028 0.0005 24 6 1.4329 -2.5026 0.0015 25 1 -0.3633 0.0003 1.0276 26 1 -0.3634 0.8897 -0.5142 27 1 -0.3633 -0.8903 -0.5135 28 1 1.6482 2.1307 -0.0004 29 1 3.8543 3.2089 0.3519 30 1 5.1758 2.4490 -0.3543 31 1 8.2129 -0.5009 -0.9401 32 1 8.2114 -0.6753 0.8313 33 1 9.5365 -2.4848 -0.1493 34 1 8.0421 -3.1644 0.5387 35 1 9.6878 -4.3773 -1.6922 36 1 8.1938 -5.0576 -1.0041 37 1 9.5108 -7.7665 -3.1224 38 1 4.1042 -2.1569 0.0102 39 1 1.2487 -2.8166 -1.0259 40 1 0.4816 -2.3654 0.5156 41 1 2.0169 -3.2660 0.5155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815241456.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:28 Heat of formation + Delta-G solvation = -120.039488 kcal Electronic energy + Delta-G solvation = -22803.894766 eV Core-core repulsion = 19262.388929 eV Total energy + Delta-G solvation = -3541.505836 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.62234 -39.22307 -37.07086 -36.17005 -35.09799 -32.86775 -32.66429 -30.98244 -30.04866 -27.92312 -26.87530 -25.92251 -23.27349 -22.49924 -22.30319 -21.54859 -20.19907 -17.78390 -16.99409 -16.86615 -16.43082 -16.35166 -16.04558 -15.26406 -15.00046 -14.55249 -14.42478 -14.32643 -14.14424 -13.77186 -13.40453 -13.04242 -12.89473 -12.67273 -12.58077 -12.24828 -12.15510 -11.94572 -11.59844 -11.41314 -11.26280 -10.89546 -10.86371 -10.72153 -10.38100 -10.34541 -10.09046 -9.98908 -9.10490 -8.92930 -8.87035 -8.20496 -7.65501 -6.11366 -4.12799 0.75668 1.44553 2.60377 2.87544 3.29641 3.36074 3.43050 3.72377 3.81169 4.33614 4.57848 4.71333 4.74068 4.84145 5.06905 5.08669 5.25349 5.26064 5.30087 5.35419 5.48257 5.54078 5.54424 5.63059 5.68736 5.88145 5.90813 5.96510 5.99754 6.07042 6.15861 6.21553 6.51553 6.62059 6.77684 7.06372 7.36964 7.40619 7.74931 7.79426 7.95476 8.13462 8.53611 9.00447 9.52055 11.00283 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014934 B = 0.003465 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.439226 B = 8077.784888 C = 9353.161579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.008 4.008 3 C -0.209 4.209 4 C 0.275 3.725 5 N -0.863 5.863 6 C -0.207 4.207 7 C 0.518 3.482 8 O -0.531 6.531 9 O -0.335 6.335 10 C 0.076 3.924 11 C 0.062 3.938 12 O -0.390 6.390 13 C 0.194 3.806 14 C -0.514 4.514 15 H 0.067 0.933 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.908 3.092 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.009 4.009 23 C -0.157 4.157 24 C -0.108 4.108 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.127 0.873 29 H 0.395 0.605 30 H 0.413 0.587 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.006 0.994 36 H 0.007 0.993 37 H 0.263 0.737 38 H 0.141 0.859 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.496 15.435 8.997 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.009 4.009 3 C -0.231 4.231 4 C 0.166 3.834 5 N -0.408 5.408 6 C -0.214 4.214 7 C 0.366 3.634 8 O -0.423 6.423 9 O -0.251 6.251 10 C 0.002 3.998 11 C -0.016 4.016 12 O -0.310 6.310 13 C 0.120 3.880 14 C -0.552 4.552 15 H 0.086 0.914 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.735 3.265 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.028 4.028 23 C -0.159 4.159 24 C -0.165 4.165 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.145 0.855 29 H 0.223 0.777 30 H 0.250 0.750 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.025 0.975 37 H 0.073 0.927 38 H 0.159 0.841 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.262 15.591 8.867 23.551 hybrid contribution 0.451 -0.132 -0.604 0.766 sum -14.811 15.459 8.263 22.948 Atomic orbital electron populations 1.20925 0.91095 1.03191 1.02590 1.19749 0.95852 0.92074 0.93203 1.20489 0.91432 0.98278 1.12938 1.17586 0.90818 0.85493 0.89483 1.42859 1.20742 1.07481 1.69744 1.18684 0.89104 0.93667 1.19896 1.20982 0.88512 0.81798 0.72104 1.90586 1.70035 1.33081 1.48594 1.86658 1.22475 1.33202 1.82726 1.23205 0.75817 0.98597 1.02181 1.22324 0.97682 0.92153 0.89445 1.87925 1.77603 1.34634 1.30860 1.20240 0.93512 0.77276 0.96981 1.21094 1.33991 1.00248 0.99859 0.91446 1.24948 0.95101 0.96153 0.98296 1.69965 1.37710 1.09290 1.36857 0.86283 0.78366 0.78628 0.83250 1.19445 1.20847 1.20796 1.21253 0.93388 0.97306 0.90826 1.19506 0.93276 0.95070 1.08007 1.20722 0.99514 0.93918 1.02334 0.90681 0.91393 0.90748 0.85512 0.77725 0.75026 0.90526 0.90471 0.91962 0.93192 0.97645 0.97491 0.92695 0.84118 0.91374 0.91753 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 9.17 36.00 0.33 -0.51 16 2 C -0.01 -0.08 5.88 -104.58 -0.62 -0.69 16 3 C -0.21 -2.16 9.56 -39.42 -0.38 -2.53 16 4 C 0.28 3.41 6.76 -83.61 -0.57 2.85 16 5 N -0.86 -9.29 8.47 32.55 0.28 -9.02 16 6 C -0.21 -3.01 5.89 -104.82 -0.62 -3.62 16 7 C 0.52 8.51 7.86 34.41 0.27 8.78 16 8 O -0.53 -8.88 13.61 -19.28 -0.26 -9.14 16 9 O -0.34 -5.93 9.46 -43.45 -0.41 -6.34 16 10 C 0.08 1.25 5.85 37.16 0.22 1.46 16 11 C 0.06 1.15 6.33 37.16 0.24 1.38 16 12 O -0.39 -9.60 10.30 -38.80 -0.40 -10.00 16 13 C 0.19 5.35 5.69 36.01 0.20 5.56 16 14 C -0.51 -15.27 9.43 -34.44 -0.32 -15.59 16 15 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 18 Si 0.91 21.94 29.54 -169.99 -5.02 16.92 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.01 -0.12 9.25 -39.19 -0.36 -0.49 16 23 C -0.16 -1.79 5.87 -104.67 -0.61 -2.41 16 24 C -0.11 -1.01 9.17 36.01 0.33 -0.68 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 27 H 0.07 0.47 6.67 -51.92 -0.35 0.13 16 28 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.39 3.03 8.91 -40.82 -0.36 2.66 16 30 H 0.41 5.05 6.13 -40.82 -0.25 4.80 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.01 0.21 8.14 -51.92 -0.42 -0.22 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.14 1.96 7.62 -52.49 -0.40 1.56 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.48 6.67 -51.93 -0.35 0.13 16 41 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 LS Contribution 349.65 15.07 5.27 5.27 Total: -1.00 -33.36 349.65 -7.69 -41.05 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.90 Total: 2.40 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -1.99 Total: -4.96 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 1.01 Total: -35.19 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -1.07 Total: -25.48 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.36 -7.69 -41.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815241456.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.986 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds