Wall clock time and date at job start Tue Mar 31 2020 06:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37997 * 119.77789 * 2 1 4 4 C 1.38914 * 120.06598 * 180.02562 * 3 2 1 5 5 N 1.38843 * 120.17702 * 179.97438 * 4 3 2 6 6 C 1.40442 * 119.64658 * 359.97434 * 4 3 2 7 7 C 1.47293 * 120.21900 * 180.02562 * 6 4 3 8 8 O 1.21524 * 119.99674 * 5.60880 * 7 6 4 9 9 O 1.34766 * 119.99932 * 185.61072 * 7 6 4 10 10 C 1.45200 * 116.99479 * 180.02562 * 9 7 6 11 11 C 1.53009 * 109.47052 * 179.97438 * 10 9 7 12 12 O 1.42900 * 109.47043 * 64.99656 * 11 10 9 13 13 C 1.42900 * 113.99997 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47115 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99833 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99660 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00226 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99685 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46926 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47118 * 119.99646 * 18 16 14 21 21 H 1.48499 * 109.47076 * 240.00229 * 18 16 14 22 22 C 1.39759 * 119.56867 * 359.73332 * 6 4 3 23 23 C 1.37763 * 119.92169 * 0.54082 * 22 6 4 24 24 C 1.50700 * 119.82433 * 179.75026 * 23 22 6 25 25 H 1.08996 * 109.47131 * 270.01922 * 1 2 3 26 26 H 1.08993 * 109.47606 * 30.02470 * 1 2 3 27 27 H 1.09008 * 109.46769 * 150.02524 * 1 2 3 28 28 H 1.07999 * 119.96833 * 359.97438 * 3 2 1 29 29 H 0.97000 * 120.00228 * 24.85178 * 5 4 3 30 30 H 0.97005 * 119.99862 * 204.84034 * 5 4 3 31 31 H 1.09001 * 109.47398 * 299.99462 * 10 9 7 32 32 H 1.09002 * 109.47636 * 60.00011 * 10 9 7 33 33 H 1.08998 * 109.47017 * 185.00164 * 11 10 9 34 34 H 1.09004 * 109.46437 * 305.00109 * 11 10 9 35 35 H 1.08994 * 109.47280 * 300.01061 * 13 12 11 36 36 H 1.09011 * 109.46726 * 60.00121 * 13 12 11 37 37 H 0.96993 * 120.00324 * 180.02562 * 17 16 14 38 38 H 1.07998 * 120.04293 * 180.27709 * 22 6 4 39 39 H 1.08997 * 109.47289 * 269.72829 * 24 23 22 40 40 H 1.09004 * 109.47184 * 149.72283 * 24 23 22 41 41 H 1.08998 * 109.46605 * 29.72616 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1923 1.1978 0.0000 4 6 3.5814 1.2047 -0.0005 5 7 4.2733 2.4085 -0.0011 6 6 4.2822 -0.0123 -0.0005 7 6 5.7552 -0.0196 -0.0005 8 8 6.3679 1.0248 0.1023 9 8 6.4232 -1.1845 -0.1146 10 6 7.8736 -1.1160 -0.1066 11 6 8.4515 -2.5260 -0.2443 12 8 8.1052 -3.0599 -1.5238 13 6 8.5997 -4.3804 -1.7558 14 6 8.1783 -4.8408 -3.1275 15 1 7.5919 -4.1900 -3.7590 16 6 8.5414 -6.0930 -3.5760 17 7 9.2550 -6.8858 -2.8067 18 14 8.0197 -6.6635 -5.2766 19 1 7.2294 -5.5935 -5.9368 20 1 9.2255 -6.9624 -6.0900 21 1 7.1887 -7.8882 -5.1545 22 6 3.5730 -1.2166 0.0057 23 6 2.1954 -1.2028 0.0005 24 6 1.4329 -2.5026 0.0015 25 1 -0.3633 0.0003 1.0276 26 1 -0.3634 0.8897 -0.5142 27 1 -0.3633 -0.8903 -0.5135 28 1 1.6482 2.1307 -0.0004 29 1 3.8543 3.2089 0.3519 30 1 5.1758 2.4490 -0.3543 31 1 8.2129 -0.5009 -0.9401 32 1 8.2114 -0.6753 0.8313 33 1 9.5365 -2.4848 -0.1493 34 1 8.0421 -3.1644 0.5387 35 1 9.6878 -4.3773 -1.6922 36 1 8.1938 -5.0576 -1.0041 37 1 9.5108 -7.7665 -3.1224 38 1 4.1042 -2.1569 0.0102 39 1 1.2487 -2.8166 -1.0259 40 1 0.4816 -2.3654 0.5156 41 1 2.0169 -3.2660 0.5155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815241456.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:27 Heat of formation + Delta-G solvation = -140.917786 kcal Electronic energy + Delta-G solvation = -22804.800117 eV Core-core repulsion = 19262.388929 eV Total energy + Delta-G solvation = -3542.411187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.75879 -40.25638 -38.74318 -37.57484 -36.06752 -34.96354 -33.66047 -31.88573 -31.51813 -29.16965 -28.53752 -26.80364 -24.68199 -24.31294 -23.42913 -22.79692 -21.22237 -18.92972 -18.71008 -18.03411 -17.95012 -17.73025 -17.12347 -16.91175 -16.45099 -16.22424 -15.74812 -15.45657 -15.08065 -14.86649 -14.63896 -14.34240 -14.11459 -13.74162 -13.53371 -13.45117 -13.22403 -13.02460 -12.96477 -12.89735 -12.72617 -12.48712 -12.36804 -12.08149 -12.00370 -11.75187 -11.45949 -11.28324 -11.00476 -10.90997 -10.29239 -9.80574 -8.54649 -8.33539 -6.45779 -0.23286 0.54197 1.39681 1.41052 1.47819 1.55890 1.66709 2.33934 2.77064 2.95317 3.00288 3.04265 3.61367 3.84628 3.90563 3.95047 4.07652 4.24363 4.33344 4.38318 4.44304 4.50089 4.64986 4.76985 4.78609 4.83364 4.89555 4.92719 4.98958 5.13341 5.16142 5.25961 5.27962 5.32880 5.41750 5.53302 5.70474 5.92637 5.93688 6.46168 6.48896 6.71099 6.78350 6.93442 7.25901 8.78976 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014934 B = 0.003465 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.439226 B = 8077.784888 C = 9353.161579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.002 4.002 3 C -0.205 4.205 4 C 0.269 3.731 5 N -0.857 5.857 6 C -0.238 4.238 7 C 0.512 3.488 8 O -0.541 6.541 9 O -0.355 6.355 10 C 0.079 3.921 11 C 0.054 3.946 12 O -0.410 6.410 13 C 0.208 3.792 14 C -0.551 4.551 15 H 0.058 0.942 16 C 0.008 3.992 17 N -0.929 5.929 18 Si 0.983 3.017 19 H -0.267 1.267 20 H -0.270 1.270 21 H -0.269 1.269 22 C -0.029 4.029 23 C -0.163 4.163 24 C -0.108 4.108 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.158 0.842 29 H 0.410 0.590 30 H 0.406 0.594 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.055 0.945 35 H -0.007 1.007 36 H -0.011 1.011 37 H 0.272 0.728 38 H 0.123 0.877 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.712 16.247 8.591 25.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.003 4.003 3 C -0.227 4.227 4 C 0.159 3.841 5 N -0.402 5.402 6 C -0.244 4.244 7 C 0.361 3.639 8 O -0.434 6.434 9 O -0.271 6.271 10 C 0.006 3.994 11 C -0.022 4.022 12 O -0.330 6.330 13 C 0.133 3.867 14 C -0.588 4.588 15 H 0.076 0.924 16 C -0.190 4.190 17 N -0.568 5.568 18 Si 0.805 3.195 19 H -0.191 1.191 20 H -0.195 1.195 21 H -0.194 1.194 22 C -0.048 4.048 23 C -0.165 4.165 24 C -0.165 4.165 25 H 0.110 0.890 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.175 0.825 29 H 0.241 0.759 30 H 0.241 0.759 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.010 0.990 36 H 0.007 0.993 37 H 0.081 0.919 38 H 0.141 0.859 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.486 16.435 8.491 25.455 hybrid contribution 1.093 -0.317 -0.392 1.203 sum -16.393 16.118 8.100 24.375 Atomic orbital electron populations 1.21023 0.88266 1.04425 1.03973 1.20185 0.97825 0.91273 0.91043 1.20851 0.90497 0.99758 1.11590 1.17805 0.91778 0.85171 0.89369 1.42826 1.20398 1.07707 1.69280 1.18784 0.88015 0.95053 1.22595 1.21408 0.89373 0.81240 0.71844 1.90561 1.70424 1.33030 1.49434 1.86652 1.22923 1.34384 1.83185 1.23195 0.75714 0.96950 1.03559 1.22645 0.99348 0.93233 0.87016 1.87872 1.77862 1.33123 1.34123 1.19879 0.92422 0.78455 0.95920 1.21403 1.35199 1.01243 1.00965 0.92350 1.25936 0.94504 0.95773 1.02810 1.70059 1.37983 1.09822 1.38916 0.85146 0.78454 0.78299 0.77571 1.19093 1.19490 1.19416 1.21221 0.94565 0.96465 0.92548 1.19794 0.92527 0.96772 1.07402 1.20772 1.00243 0.92729 1.02707 0.88984 0.89756 0.90017 0.82467 0.75937 0.75866 0.90993 0.87402 0.89827 0.92630 0.98964 0.99275 0.91940 0.85901 0.91193 0.89309 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.17 71.23 0.65 -0.56 16 2 C 0.00 -0.04 5.88 -19.84 -0.12 -0.15 16 3 C -0.20 -3.75 9.56 22.37 0.21 -3.53 16 4 C 0.27 6.46 6.76 38.73 0.26 6.72 16 5 N -0.86 -17.68 8.47 -50.93 -0.43 -18.11 16 6 C -0.24 -7.09 5.89 -19.99 -0.12 -7.21 16 7 C 0.51 17.42 7.86 70.20 0.55 17.97 16 8 O -0.54 -18.44 13.61 19.76 0.27 -18.17 16 9 O -0.36 -13.11 9.46 -54.10 -0.51 -13.63 16 10 C 0.08 2.65 5.85 71.99 0.42 3.07 16 11 C 0.05 2.07 6.33 71.99 0.46 2.52 16 12 O -0.41 -20.86 10.30 -145.57 -1.50 -22.36 16 13 C 0.21 11.90 5.69 71.24 0.41 12.31 16 14 C -0.55 -33.54 9.43 25.60 0.24 -33.30 16 15 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 16 C 0.01 0.49 5.46 84.66 0.46 0.95 16 17 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 18 Si 0.98 44.88 29.54 68.60 2.03 46.90 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 C -0.03 -0.82 9.25 22.53 0.21 -0.61 16 23 C -0.16 -3.62 5.87 -19.89 -0.12 -3.74 16 24 C -0.11 -1.89 9.17 71.24 0.65 -1.24 16 25 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 27 H 0.08 0.74 6.67 -2.38 -0.02 0.73 16 28 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 29 H 0.41 5.60 8.91 -92.71 -0.83 4.78 16 30 H 0.41 9.86 6.13 -92.70 -0.57 9.29 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 35 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 36 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 37 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 38 H 0.12 3.76 7.62 -2.91 -0.02 3.74 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 1.09 6.67 -2.39 -0.02 1.08 16 41 H 0.06 1.13 8.08 -2.39 -0.02 1.11 16 Total: -1.00 -73.16 349.65 3.98 -69.18 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -0.34 Total: 18.71 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 4.18 Total: -6.81 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -0.15 Total: -73.82 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -1.74 Total: -54.16 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -73.16 3.98 -69.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815241456.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.739 kcal (2) G-P(sol) polarization free energy of solvation -73.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds