Wall clock time and date at job start Tue Mar 31 2020 06:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47210 * 2 1 4 4 C 1.50699 * 109.46960 * 120.00272 * 2 1 3 5 5 C 1.38619 * 120.32368 * 120.00047 * 4 2 1 6 6 C 1.38595 * 118.49192 * 179.97438 * 5 4 2 7 7 C 1.39339 * 119.05442 * 359.97438 * 6 5 4 8 8 C 1.48072 * 119.72718 * 180.02562 * 7 6 5 9 9 O 1.21429 * 119.99654 * 359.97438 * 8 7 6 10 10 O 1.34674 * 120.00259 * 180.02562 * 8 7 6 11 11 C 1.45206 * 117.00006 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46737 * 179.97438 * 11 10 8 13 13 O 1.42901 * 109.47458 * 65.00490 * 12 11 10 14 14 C 1.42897 * 114.00362 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47026 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00297 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99827 * 180.02562 * 15 14 13 18 18 N 1.31523 * 119.99784 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 119.99965 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47566 * 59.99780 * 19 17 15 21 21 H 1.48503 * 109.47234 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47079 * 299.99860 * 19 17 15 23 23 N 1.32750 * 120.55048 * 359.97438 * 7 6 5 24 24 C 1.31504 * 121.64014 * 0.04255 * 23 7 6 25 25 H 1.09000 * 109.47163 * 299.99685 * 1 2 3 26 26 H 1.09005 * 109.47222 * 60.00015 * 1 2 3 27 27 H 1.08999 * 109.47613 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47404 * 239.99866 * 2 1 3 29 29 H 1.09000 * 109.47253 * 60.00376 * 3 2 1 30 30 H 1.08999 * 109.47242 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47478 * 299.99851 * 3 2 1 32 32 H 1.07998 * 120.75565 * 359.95321 * 5 4 2 33 33 H 1.08005 * 120.47199 * 179.72629 * 6 5 4 34 34 H 1.08995 * 109.47362 * 300.00001 * 11 10 8 35 35 H 1.09004 * 109.46702 * 60.00538 * 11 10 8 36 36 H 1.09001 * 109.46866 * 184.99943 * 12 11 10 37 37 H 1.08996 * 109.47581 * 304.99959 * 12 11 10 38 38 H 1.08994 * 109.47346 * 299.99876 * 14 13 12 39 39 H 1.09002 * 109.47135 * 59.99908 * 14 13 12 40 40 H 0.97003 * 119.99162 * 179.97438 * 18 17 15 41 41 H 1.07997 * 119.54520 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8296 -1.8381 1.1110 6 6 3.2709 -2.4613 2.2676 7 6 2.9001 -1.9352 3.5034 8 6 3.3636 -2.5888 4.7486 9 8 4.0635 -3.5794 4.6901 10 8 3.0081 -2.0853 5.9460 11 6 3.4985 -2.7779 7.1243 12 6 2.9957 -2.0649 8.3811 13 8 1.5718 -2.1657 8.4486 14 6 0.9976 -1.5294 9.5920 15 6 -0.4998 -1.6967 9.5608 16 1 -0.9663 -2.2347 8.7489 17 6 -1.2743 -1.1619 10.5684 18 7 -0.7062 -0.5062 11.5570 19 14 -3.1302 -1.3698 10.5302 20 1 -3.4669 -2.8160 10.5482 21 1 -3.7271 -0.7073 11.7177 22 1 -3.6723 -0.7507 9.2940 23 7 2.1356 -0.8522 3.5738 24 6 1.7030 -0.2417 2.4924 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 3.1005 -2.2225 0.1388 33 1 3.8900 -3.3445 2.2118 34 1 3.1352 -3.8055 7.1192 35 1 4.5885 -2.7777 7.1184 36 1 3.4351 -2.5305 9.2633 37 1 3.2841 -1.0145 8.3430 38 1 1.3955 -1.9841 10.4991 39 1 1.2446 -0.4678 9.5793 40 1 -1.2512 -0.1297 12.2656 41 1 1.0823 0.6368 2.5890 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815248061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:46 Heat of formation + Delta-G solvation = -110.632710 kcal Electronic energy + Delta-G solvation = -22409.930626 eV Core-core repulsion = 18868.832698 eV Total energy + Delta-G solvation = -3541.097928 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.98329 -39.78705 -37.05552 -36.22871 -35.95681 -32.73625 -32.60044 -30.96126 -29.85162 -27.54266 -26.91712 -25.32328 -24.13771 -22.60897 -22.21653 -21.33540 -20.61544 -18.29297 -17.43617 -16.55222 -16.49009 -16.26159 -15.67456 -15.34463 -14.94518 -14.66162 -14.52618 -14.34666 -14.21244 -13.86959 -13.42877 -13.38560 -13.17606 -12.78532 -12.55467 -12.49018 -11.91481 -11.62745 -11.52667 -11.38134 -11.31696 -10.91470 -10.85313 -10.74467 -10.59342 -10.33144 -10.15600 -10.01732 -9.67149 -9.30417 -9.08955 -8.81722 -8.15583 -6.07443 -4.08652 0.30605 0.96797 2.36699 2.64729 3.35506 3.37473 3.42029 3.59855 3.95301 4.23374 4.33924 4.36772 4.55119 4.65721 4.73997 4.75395 4.79838 4.91836 5.13335 5.24488 5.25786 5.29010 5.37154 5.44182 5.45420 5.50578 5.57221 5.66362 5.71968 5.83336 5.91735 5.97392 5.98382 6.13485 6.28066 6.52510 7.10958 7.45612 7.49184 7.82803 7.89164 8.17834 8.58544 9.03888 9.55695 11.04196 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013669 B = 0.003233 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.002591 B = 8659.393003 C =10189.411954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.054 4.054 3 C -0.148 4.148 4 C -0.102 4.102 5 C -0.085 4.085 6 C -0.104 4.104 7 C 0.089 3.911 8 C 0.521 3.479 9 O -0.509 6.509 10 O -0.314 6.314 11 C 0.071 3.929 12 C 0.063 3.937 13 O -0.390 6.390 14 C 0.195 3.805 15 C -0.514 4.514 16 H 0.066 0.934 17 C 0.056 3.944 18 N -0.900 5.900 19 Si 0.909 3.091 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.274 1.274 23 N -0.422 5.422 24 C 0.103 3.897 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.006 0.994 39 H 0.007 0.993 40 H 0.264 0.736 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.482 1.040 -24.547 25.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.073 4.073 3 C -0.205 4.205 4 C -0.104 4.104 5 C -0.111 4.111 6 C -0.124 4.124 7 C -0.047 4.047 8 C 0.364 3.636 9 O -0.398 6.398 10 O -0.228 6.228 11 C -0.002 4.002 12 C -0.015 4.015 13 O -0.310 6.310 14 C 0.121 3.879 15 C -0.552 4.552 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.539 5.539 19 Si 0.736 3.264 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.200 1.200 23 N -0.132 5.132 24 C -0.058 4.058 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.023 0.977 39 H 0.025 0.975 40 H 0.074 0.926 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.325 1.042 -23.596 25.043 hybrid contribution -0.464 -0.355 -0.365 0.689 sum 7.861 0.686 -23.961 25.227 Atomic orbital electron populations 1.21899 0.93555 1.02481 1.02635 1.20149 0.96506 0.96268 0.94413 1.21891 1.01350 0.94619 1.02618 1.21265 0.96607 0.95694 0.96864 1.21487 0.96200 0.94574 0.98849 1.22091 0.98664 1.00395 0.91261 1.20127 0.98865 0.94658 0.91026 1.20783 0.77039 0.81452 0.84301 1.90816 1.35972 1.24976 1.88050 1.86783 1.68205 1.54075 1.13730 1.23313 0.98172 0.97058 0.81701 1.22304 0.86220 0.99410 0.93568 1.87927 1.15826 1.78402 1.48798 1.20222 0.93679 0.91774 0.82247 1.21024 0.90480 1.35184 1.08513 0.91569 1.24944 0.99492 0.95024 0.95034 1.69961 1.35976 1.36371 1.11600 0.86385 0.84101 0.78460 0.77464 1.20033 1.21163 1.19978 1.67767 1.06460 1.06035 1.32964 1.22778 0.97419 0.99024 0.86544 0.91878 0.91851 0.92297 0.89946 0.91930 0.92394 0.91850 0.83859 0.83202 0.90332 0.90284 0.91892 0.93097 0.97651 0.97470 0.92625 0.81882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.01 37.16 0.33 -0.54 16 2 C -0.05 -0.32 3.11 -91.78 -0.28 -0.61 16 3 C -0.15 -0.80 9.01 37.16 0.33 -0.47 16 4 C -0.10 -0.88 4.80 -104.35 -0.50 -1.38 16 5 C -0.09 -0.71 9.79 -39.31 -0.39 -1.10 16 6 C -0.10 -1.14 9.63 -39.04 -0.38 -1.52 16 7 C 0.09 1.31 6.75 -83.03 -0.56 0.75 16 8 C 0.52 8.81 7.95 34.77 0.28 9.09 16 9 O -0.51 -8.79 16.11 -19.21 -0.31 -9.10 16 10 O -0.31 -5.92 10.01 -43.20 -0.43 -6.35 16 11 C 0.07 1.21 5.85 37.16 0.22 1.42 16 12 C 0.06 1.21 6.33 37.16 0.24 1.44 16 13 O -0.39 -9.89 10.30 -38.79 -0.40 -10.29 16 14 C 0.19 5.51 5.69 36.01 0.20 5.71 16 15 C -0.51 -15.59 9.43 -34.44 -0.32 -15.92 16 16 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 17 C 0.06 1.65 5.46 -17.81 -0.10 1.56 16 18 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 19 Si 0.91 22.29 29.54 -169.99 -5.02 17.27 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 23 N -0.42 -6.37 10.12 -9.81 -0.10 -6.47 16 24 C 0.10 1.15 9.90 -17.56 -0.17 0.98 16 25 H 0.06 0.40 7.41 -51.93 -0.38 0.01 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.39 7.92 -51.93 -0.41 -0.03 16 29 H 0.06 0.36 7.40 -51.93 -0.38 -0.03 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.14 0.73 8.00 -52.49 -0.42 0.31 16 33 H 0.15 1.45 7.64 -52.48 -0.40 1.05 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.16 1.49 7.12 -52.49 -0.37 1.12 16 LS Contribution 356.41 15.07 5.37 5.37 Total: -1.00 -35.11 356.41 -7.40 -42.51 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -6.15 Total: -5.75 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.10 Total: -0.57 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.64 Total: -33.08 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -1.14 Total: -25.74 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.11 -7.40 -42.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815248061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.125 kcal (2) G-P(sol) polarization free energy of solvation -35.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds