Wall clock time and date at job start Tue Mar 31 2020 06:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47210 * 2 1 4 4 C 1.50699 * 109.46960 * 120.00272 * 2 1 3 5 5 C 1.38619 * 120.32368 * 120.00047 * 4 2 1 6 6 C 1.38595 * 118.49192 * 179.97438 * 5 4 2 7 7 C 1.39339 * 119.05442 * 359.97438 * 6 5 4 8 8 C 1.48072 * 119.72718 * 180.02562 * 7 6 5 9 9 O 1.21429 * 119.99654 * 359.97438 * 8 7 6 10 10 O 1.34674 * 120.00259 * 180.02562 * 8 7 6 11 11 C 1.45206 * 117.00006 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.46737 * 179.97438 * 11 10 8 13 13 O 1.42901 * 109.47458 * 65.00490 * 12 11 10 14 14 C 1.42897 * 114.00362 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47026 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00297 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99827 * 180.02562 * 15 14 13 18 18 N 1.31523 * 119.99784 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 119.99965 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47566 * 59.99780 * 19 17 15 21 21 H 1.48503 * 109.47234 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47079 * 299.99860 * 19 17 15 23 23 N 1.32750 * 120.55048 * 359.97438 * 7 6 5 24 24 C 1.31504 * 121.64014 * 0.04255 * 23 7 6 25 25 H 1.09000 * 109.47163 * 299.99685 * 1 2 3 26 26 H 1.09005 * 109.47222 * 60.00015 * 1 2 3 27 27 H 1.08999 * 109.47613 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47404 * 239.99866 * 2 1 3 29 29 H 1.09000 * 109.47253 * 60.00376 * 3 2 1 30 30 H 1.08999 * 109.47242 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47478 * 299.99851 * 3 2 1 32 32 H 1.07998 * 120.75565 * 359.95321 * 5 4 2 33 33 H 1.08005 * 120.47199 * 179.72629 * 6 5 4 34 34 H 1.08995 * 109.47362 * 300.00001 * 11 10 8 35 35 H 1.09004 * 109.46702 * 60.00538 * 11 10 8 36 36 H 1.09001 * 109.46866 * 184.99943 * 12 11 10 37 37 H 1.08996 * 109.47581 * 304.99959 * 12 11 10 38 38 H 1.08994 * 109.47346 * 299.99876 * 14 13 12 39 39 H 1.09002 * 109.47135 * 59.99908 * 14 13 12 40 40 H 0.97003 * 119.99162 * 179.97438 * 18 17 15 41 41 H 1.07997 * 119.54520 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8296 -1.8381 1.1110 6 6 3.2709 -2.4613 2.2676 7 6 2.9001 -1.9352 3.5034 8 6 3.3636 -2.5888 4.7486 9 8 4.0635 -3.5794 4.6901 10 8 3.0081 -2.0853 5.9460 11 6 3.4985 -2.7779 7.1243 12 6 2.9957 -2.0649 8.3811 13 8 1.5718 -2.1657 8.4486 14 6 0.9976 -1.5294 9.5920 15 6 -0.4998 -1.6967 9.5608 16 1 -0.9663 -2.2347 8.7489 17 6 -1.2743 -1.1619 10.5684 18 7 -0.7062 -0.5062 11.5570 19 14 -3.1302 -1.3698 10.5302 20 1 -3.4669 -2.8160 10.5482 21 1 -3.7271 -0.7073 11.7177 22 1 -3.6723 -0.7507 9.2940 23 7 2.1356 -0.8522 3.5738 24 6 1.7030 -0.2417 2.4924 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 3.1005 -2.2225 0.1388 33 1 3.8900 -3.3445 2.2118 34 1 3.1352 -3.8055 7.1192 35 1 4.5885 -2.7777 7.1184 36 1 3.4351 -2.5305 9.2633 37 1 3.2841 -1.0145 8.3430 38 1 1.3955 -1.9841 10.4991 39 1 1.2446 -0.4678 9.5793 40 1 -1.2512 -0.1297 12.2656 41 1 1.0823 0.6368 2.5890 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815248061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:46 Heat of formation + Delta-G solvation = -132.773133 kcal Electronic energy + Delta-G solvation = -22410.890706 eV Core-core repulsion = 18868.832698 eV Total energy + Delta-G solvation = -3542.058009 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.00326 -40.90931 -38.78205 -37.53565 -36.84413 -34.96355 -33.43463 -32.08008 -31.19604 -29.05627 -27.96664 -26.31662 -24.96541 -24.58632 -23.77920 -22.51302 -21.29778 -19.44392 -18.76067 -18.38340 -17.98309 -17.50859 -17.10870 -16.45937 -16.32221 -16.28617 -15.86260 -15.27926 -15.24941 -14.98755 -14.49626 -14.31868 -14.15735 -13.87144 -13.81913 -13.67695 -13.22607 -12.99545 -12.94454 -12.71568 -12.49191 -12.13355 -12.09289 -12.05970 -11.94010 -11.79165 -11.71116 -11.31625 -10.96320 -10.91178 -10.55942 -10.29095 -10.13730 -8.33599 -6.46101 -0.62452 0.17651 1.23568 1.38493 1.43810 1.46699 1.52237 2.33618 2.67625 2.99915 3.00004 3.05717 3.56248 3.63554 3.80814 3.87348 3.88475 3.99074 4.06808 4.28307 4.29601 4.36594 4.44656 4.53611 4.60439 4.70758 4.82435 4.83204 4.84442 4.93032 5.02311 5.12797 5.15205 5.19690 5.22035 5.41052 5.48751 5.51683 5.52232 5.93345 6.38258 6.48948 6.77200 6.82448 7.25258 8.78613 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013669 B = 0.003233 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.002591 B = 8659.393003 C =10189.411954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C -0.148 4.148 4 C -0.086 4.086 5 C -0.075 4.075 6 C -0.097 4.097 7 C 0.052 3.948 8 C 0.518 3.482 9 O -0.521 6.521 10 O -0.342 6.342 11 C 0.074 3.926 12 C 0.055 3.945 13 O -0.410 6.410 14 C 0.209 3.791 15 C -0.553 4.553 16 H 0.058 0.942 17 C 0.008 3.992 18 N -0.929 5.929 19 Si 0.984 3.016 20 H -0.265 1.265 21 H -0.271 1.271 22 H -0.267 1.267 23 N -0.468 5.468 24 C 0.090 3.910 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.107 0.893 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.187 0.813 33 H 0.162 0.838 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.053 0.947 38 H -0.006 1.006 39 H -0.013 1.013 40 H 0.272 0.728 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.905 0.949 -27.076 28.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.068 4.068 3 C -0.205 4.205 4 C -0.088 4.088 5 C -0.100 4.100 6 C -0.117 4.117 7 C -0.083 4.083 8 C 0.362 3.638 9 O -0.411 6.411 10 O -0.257 6.257 11 C 0.001 3.999 12 C -0.022 4.022 13 O -0.331 6.331 14 C 0.134 3.866 15 C -0.591 4.591 16 H 0.076 0.924 17 C -0.191 4.191 18 N -0.568 5.568 19 Si 0.806 3.194 20 H -0.190 1.190 21 H -0.196 1.196 22 H -0.192 1.192 23 N -0.179 5.179 24 C -0.071 4.071 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.125 0.875 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.204 0.796 33 H 0.180 0.820 34 H 0.094 0.906 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.012 0.988 39 H 0.005 0.995 40 H 0.081 0.919 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.778 0.943 -26.131 27.280 hybrid contribution -0.219 -0.268 0.320 0.471 sum 7.559 0.675 -25.811 26.904 Atomic orbital electron populations 1.21916 0.93479 1.02278 1.03025 1.20241 0.96424 0.96451 0.93686 1.21902 1.01287 0.94296 1.03038 1.21614 0.95023 0.95265 0.96865 1.21975 0.94743 0.93670 0.99648 1.22301 0.98163 1.00530 0.90683 1.20070 1.01258 0.95937 0.91023 1.21298 0.76668 0.81415 0.84373 1.90778 1.36696 1.25494 1.88171 1.86769 1.69060 1.54977 1.14854 1.23331 0.99924 0.96188 0.80489 1.22642 0.83143 1.00395 0.96035 1.87872 1.19507 1.78073 1.47609 1.19864 0.93366 0.90577 0.82791 1.21354 0.91855 1.36620 1.09244 0.92403 1.25958 1.05155 0.93887 0.94069 1.70060 1.38279 1.36374 1.12073 0.85235 0.77010 0.79012 0.78159 1.18980 1.19578 1.19164 1.67611 1.07914 1.07132 1.35282 1.23085 0.97667 0.99360 0.86989 0.92828 0.90221 0.92794 0.87469 0.92745 0.92503 0.90295 0.79551 0.82044 0.90602 0.86861 0.89487 0.92863 0.98792 0.99498 0.91910 0.80882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.01 71.98 0.65 -0.76 16 2 C -0.05 -0.43 3.11 -11.54 -0.04 -0.46 16 3 C -0.15 -1.23 9.01 71.98 0.65 -0.58 16 4 C -0.09 -1.29 4.80 -19.69 -0.09 -1.39 16 5 C -0.08 -1.04 9.79 22.45 0.22 -0.82 16 6 C -0.10 -2.00 9.63 22.62 0.22 -1.79 16 7 C 0.05 1.55 6.75 41.88 0.28 1.83 16 8 C 0.52 18.09 7.95 70.43 0.56 18.65 16 9 O -0.52 -18.26 16.11 20.07 0.32 -17.93 16 10 O -0.34 -13.41 10.01 -53.18 -0.53 -13.94 16 11 C 0.07 2.54 5.85 71.98 0.42 2.97 16 12 C 0.05 2.15 6.33 71.98 0.46 2.61 16 13 O -0.41 -21.61 10.30 -145.58 -1.50 -23.11 16 14 C 0.21 12.26 5.69 71.24 0.41 12.67 16 15 C -0.55 -34.46 9.43 25.60 0.24 -34.22 16 16 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 17 C 0.01 0.47 5.46 84.65 0.46 0.94 16 18 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 19 Si 0.98 45.61 29.54 68.60 2.03 47.63 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 N -0.47 -14.65 10.12 -184.95 -1.87 -16.52 16 24 C 0.09 2.00 9.90 84.83 0.84 2.84 16 25 H 0.05 0.61 7.41 -2.39 -0.02 0.59 16 26 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.11 0.49 7.92 -2.39 -0.02 0.47 16 29 H 0.05 0.55 7.40 -2.39 -0.02 0.53 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.19 0.96 8.00 -2.91 -0.02 0.94 16 33 H 0.16 2.88 7.64 -2.91 -0.02 2.86 16 34 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 38 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 41 H 0.17 3.21 7.12 -2.91 -0.02 3.19 16 Total: -1.00 -78.35 356.41 5.02 -73.33 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 1.01 Total: 4.72 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 5.27 Total: 2.47 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -1.59 Total: -73.17 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: -1.71 Total: -54.99 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -78.35 5.02 -73.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815248061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.442 kcal (2) G-P(sol) polarization free energy of solvation -78.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds