Wall clock time and date at job start Tue Mar 31 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38215 * 120.41867 * 2 1 4 4 N 1.31854 * 120.76332 * 179.97438 * 3 2 1 5 5 C 1.31888 * 121.72838 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76199 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.41925 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47098 * 269.97348 * 7 6 5 9 9 C 1.50694 * 109.47102 * 179.97438 * 8 7 6 10 10 O 1.20823 * 120.00131 * 0.02562 * 9 8 7 11 11 O 1.34233 * 120.00283 * 180.02562 * 9 8 7 12 12 C 1.45201 * 117.00520 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47313 * 179.97438 * 12 11 9 14 14 O 1.42898 * 109.46939 * 65.00044 * 13 12 11 15 15 C 1.42904 * 114.00316 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47605 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99291 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00058 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99794 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99718 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47213 * 90.00232 * 20 18 16 22 22 H 1.48500 * 109.46767 * 209.99858 * 20 18 16 23 23 H 1.48497 * 109.47274 * 329.99881 * 20 18 16 24 24 C 1.38628 * 120.41554 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46835 * 90.00158 * 1 2 3 26 26 H 1.09001 * 109.46934 * 209.99675 * 1 2 3 27 27 H 1.08992 * 109.47378 * 330.00016 * 1 2 3 28 28 H 1.07995 * 119.62265 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.61890 * 179.97438 * 5 4 3 30 30 H 1.09008 * 109.46574 * 29.97555 * 7 6 5 31 31 H 1.08994 * 109.46982 * 149.97341 * 7 6 5 32 32 H 1.08993 * 109.47281 * 299.99960 * 8 7 6 33 33 H 1.09001 * 109.46924 * 59.99900 * 8 7 6 34 34 H 1.09002 * 109.46751 * 300.00143 * 12 11 9 35 35 H 1.09002 * 109.46679 * 59.99664 * 12 11 9 36 36 H 1.08995 * 109.47160 * 184.99795 * 13 12 11 37 37 H 1.09002 * 109.47289 * 305.00493 * 13 12 11 38 38 H 1.09005 * 109.46417 * 300.00466 * 15 14 13 39 39 H 1.08994 * 109.47020 * 59.99396 * 15 14 13 40 40 H 0.97001 * 119.99657 * 180.02562 * 19 18 16 41 41 H 1.08003 * 120.79539 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2257 0.0823 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 4.4027 -2.4194 0.0001 8 6 4.6772 -2.8499 -1.4421 9 6 5.4855 -4.1217 -1.4415 10 8 5.8085 -4.6317 -0.3949 11 8 5.8467 -4.6879 -2.6037 12 6 6.6240 -5.9120 -2.5272 13 6 6.9386 -6.4056 -3.9407 14 8 7.7855 -5.4605 -4.5977 15 6 8.1417 -5.8283 -5.9319 16 6 9.0315 -4.7665 -6.5252 17 1 9.2979 -3.8975 -5.9418 18 6 9.5045 -4.9039 -7.8129 19 7 9.1796 -5.9619 -8.5234 20 14 10.6068 -3.5874 -8.5485 21 1 12.0265 -3.9111 -8.2575 22 1 10.4023 -3.5351 -10.0184 23 1 10.2678 -2.2693 -7.9544 24 6 2.2089 -1.1955 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6676 2.1275 0.0004 29 1 5.3047 0.1285 0.0005 30 1 5.3484 -2.2489 0.5147 31 1 3.8458 -3.2031 0.5135 32 1 3.7316 -3.0202 -1.9567 33 1 5.2341 -2.0660 -1.9555 34 1 7.5547 -5.7186 -1.9938 35 1 6.0521 -6.6728 -1.9959 36 1 7.4446 -7.3694 -3.8848 37 1 6.0109 -6.5142 -4.5026 38 1 8.6728 -6.7801 -5.9168 39 1 7.2392 -5.9254 -6.5352 40 1 9.5127 -6.0588 -9.4292 41 1 1.6888 -2.1420 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815250952.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:44 Heat of formation + Delta-G solvation = -120.223716 kcal Electronic energy + Delta-G solvation = -21864.455835 eV Core-core repulsion = 18322.942010 eV Total energy + Delta-G solvation = -3541.513825 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.74611 -40.24890 -37.19888 -36.14558 -34.92958 -33.92569 -32.78670 -31.00623 -29.88742 -27.67099 -26.99002 -25.66529 -23.42079 -22.55277 -22.20998 -21.35485 -20.47140 -17.76158 -17.24993 -17.10895 -16.64438 -16.57517 -16.16051 -15.49240 -14.78239 -14.66269 -14.61530 -14.37204 -13.99522 -13.68417 -13.46433 -13.37422 -13.20112 -12.85701 -12.78683 -12.66278 -12.34871 -11.92133 -11.85971 -11.44397 -11.36508 -10.95172 -10.85830 -10.77950 -10.45562 -10.39001 -10.06650 -9.91284 -9.72190 -9.14620 -9.12417 -8.89284 -8.23065 -6.13308 -4.15024 0.74994 0.94634 2.24159 2.74973 3.29608 3.34605 3.40223 3.46399 4.10747 4.31248 4.36608 4.38464 4.58443 4.62449 4.67346 4.71181 4.75666 4.85394 5.04673 5.16466 5.18771 5.23072 5.23351 5.28376 5.39458 5.43982 5.51947 5.63398 5.76900 5.84325 5.87563 5.91092 5.97115 6.07149 6.39381 6.58867 7.03472 7.37929 7.67709 7.76525 7.81660 8.10936 8.50559 8.97486 9.49824 10.98237 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016439 B = 0.002481 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.835415 B =11284.807633 C =12300.612582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.137 4.137 3 C 0.093 3.907 4 N -0.479 5.479 5 C 0.098 3.902 6 C -0.128 4.128 7 C -0.064 4.064 8 C -0.111 4.111 9 C 0.461 3.539 10 O -0.518 6.518 11 O -0.341 6.341 12 C 0.074 3.926 13 C 0.061 3.939 14 O -0.391 6.391 15 C 0.194 3.806 16 C -0.515 4.515 17 H 0.067 0.933 18 C 0.056 3.944 19 N -0.899 5.899 20 Si 0.909 3.091 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.271 1.271 24 C -0.073 4.073 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.153 0.847 29 H 0.157 0.843 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.006 0.994 39 H 0.007 0.993 40 H 0.264 0.736 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.249 8.102 18.034 26.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.139 4.139 3 C -0.065 4.065 4 N -0.187 5.187 5 C -0.059 4.059 6 C -0.130 4.130 7 C -0.102 4.102 8 C -0.148 4.148 9 C 0.305 3.695 10 O -0.408 6.408 11 O -0.257 6.257 12 C 0.001 3.999 13 C -0.017 4.017 14 O -0.311 6.311 15 C 0.120 3.880 16 C -0.553 4.553 17 H 0.085 0.915 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.736 3.264 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.196 1.196 24 C -0.099 4.099 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.171 0.829 29 H 0.174 0.826 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.074 0.926 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.590 8.820 18.217 26.170 hybrid contribution 0.121 -0.677 -0.641 0.941 sum -16.468 8.143 17.576 25.425 Atomic orbital electron populations 1.20734 0.90143 1.03141 1.02777 1.20952 0.97648 0.94142 1.01154 1.22687 0.90012 0.97497 0.96261 1.67705 1.08341 1.31235 1.11380 1.22748 1.00516 0.87059 0.95551 1.20845 0.94488 0.96509 1.01194 1.20335 1.00732 0.93843 0.95315 1.21359 1.01019 0.93471 0.98968 1.23604 0.77846 0.86078 0.82001 1.90646 1.53304 1.63664 1.33181 1.86606 1.65288 1.40100 1.33662 1.23218 0.94976 0.83398 0.98333 1.22323 0.95240 0.92961 0.91129 1.87916 1.66871 1.45348 1.30946 1.20242 0.94769 0.96251 0.76731 1.21044 1.29410 1.06477 0.98375 0.91509 1.24955 0.96700 0.96285 0.96594 1.69962 1.45256 1.28048 1.10533 0.86319 0.80451 0.81625 0.78014 1.20448 1.21052 1.19574 1.21439 0.93388 0.98363 0.96725 0.90726 0.91280 0.91145 0.82931 0.82576 0.89377 0.89714 0.87603 0.87157 0.90460 0.90456 0.91948 0.93218 0.97608 0.97490 0.92621 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.04 36.01 0.36 -0.16 16 2 C -0.14 -1.02 5.90 -104.48 -0.62 -1.64 16 3 C 0.09 0.80 10.86 -17.55 -0.19 0.61 16 4 N -0.48 -5.14 10.36 -13.26 -0.14 -5.28 16 5 C 0.10 0.94 10.86 -17.55 -0.19 0.75 16 6 C -0.13 -1.10 5.15 -104.48 -0.54 -1.64 16 7 C -0.06 -0.55 4.66 -27.88 -0.13 -0.68 16 8 C -0.11 -1.07 5.79 -27.89 -0.16 -1.23 16 9 C 0.46 6.32 7.96 36.00 0.29 6.60 16 10 O -0.52 -8.03 15.73 -18.75 -0.29 -8.32 16 11 O -0.34 -5.52 10.19 -42.03 -0.43 -5.95 16 12 C 0.07 1.16 5.84 37.15 0.22 1.38 16 13 C 0.06 1.11 6.33 37.15 0.24 1.34 16 14 O -0.39 -9.46 10.30 -38.80 -0.40 -9.86 16 15 C 0.19 5.31 5.69 36.01 0.20 5.51 16 16 C -0.51 -15.20 9.43 -34.44 -0.32 -15.52 16 17 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 20 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 C -0.07 -0.57 9.54 -39.28 -0.37 -0.94 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 27 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 28 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.09 0.78 8.05 -51.92 -0.42 0.36 16 31 H 0.08 0.70 8.05 -51.93 -0.42 0.29 16 32 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.24 8.13 -51.93 -0.42 0.81 16 35 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 360.10 15.07 5.43 5.43 Total: -1.00 -34.49 360.10 -7.73 -42.22 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -6.29 Total: -4.91 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -1.32 Total: -4.10 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.60 Total: -31.35 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -1.12 Total: -24.13 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.49 -7.73 -42.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815250952.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.002 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds