Wall clock time and date at job start Tue Mar 31 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38215 * 120.41867 * 2 1 4 4 N 1.31854 * 120.76332 * 179.97438 * 3 2 1 5 5 C 1.31888 * 121.72838 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76199 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.41925 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47098 * 269.97348 * 7 6 5 9 9 C 1.50694 * 109.47102 * 179.97438 * 8 7 6 10 10 O 1.20823 * 120.00131 * 0.02562 * 9 8 7 11 11 O 1.34233 * 120.00283 * 180.02562 * 9 8 7 12 12 C 1.45201 * 117.00520 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47313 * 179.97438 * 12 11 9 14 14 O 1.42898 * 109.46939 * 65.00044 * 13 12 11 15 15 C 1.42904 * 114.00316 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47605 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99291 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00058 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99794 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99718 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47213 * 90.00232 * 20 18 16 22 22 H 1.48500 * 109.46767 * 209.99858 * 20 18 16 23 23 H 1.48497 * 109.47274 * 329.99881 * 20 18 16 24 24 C 1.38628 * 120.41554 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46835 * 90.00158 * 1 2 3 26 26 H 1.09001 * 109.46934 * 209.99675 * 1 2 3 27 27 H 1.08992 * 109.47378 * 330.00016 * 1 2 3 28 28 H 1.07995 * 119.62265 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.61890 * 179.97438 * 5 4 3 30 30 H 1.09008 * 109.46574 * 29.97555 * 7 6 5 31 31 H 1.08994 * 109.46982 * 149.97341 * 7 6 5 32 32 H 1.08993 * 109.47281 * 299.99960 * 8 7 6 33 33 H 1.09001 * 109.46924 * 59.99900 * 8 7 6 34 34 H 1.09002 * 109.46751 * 300.00143 * 12 11 9 35 35 H 1.09002 * 109.46679 * 59.99664 * 12 11 9 36 36 H 1.08995 * 109.47160 * 184.99795 * 13 12 11 37 37 H 1.09002 * 109.47289 * 305.00493 * 13 12 11 38 38 H 1.09005 * 109.46417 * 300.00466 * 15 14 13 39 39 H 1.08994 * 109.47020 * 59.99396 * 15 14 13 40 40 H 0.97001 * 119.99657 * 180.02562 * 19 18 16 41 41 H 1.08003 * 120.79539 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2257 0.0823 0.0005 6 6 3.5948 -1.1472 -0.0005 7 6 4.4027 -2.4194 0.0001 8 6 4.6772 -2.8499 -1.4421 9 6 5.4855 -4.1217 -1.4415 10 8 5.8085 -4.6317 -0.3949 11 8 5.8467 -4.6879 -2.6037 12 6 6.6240 -5.9120 -2.5272 13 6 6.9386 -6.4056 -3.9407 14 8 7.7855 -5.4605 -4.5977 15 6 8.1417 -5.8283 -5.9319 16 6 9.0315 -4.7665 -6.5252 17 1 9.2979 -3.8975 -5.9418 18 6 9.5045 -4.9039 -7.8129 19 7 9.1796 -5.9619 -8.5234 20 14 10.6068 -3.5874 -8.5485 21 1 12.0265 -3.9111 -8.2575 22 1 10.4023 -3.5351 -10.0184 23 1 10.2678 -2.2693 -7.9544 24 6 2.2089 -1.1955 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6676 2.1275 0.0004 29 1 5.3047 0.1285 0.0005 30 1 5.3484 -2.2489 0.5147 31 1 3.8458 -3.2031 0.5135 32 1 3.7316 -3.0202 -1.9567 33 1 5.2341 -2.0660 -1.9555 34 1 7.5547 -5.7186 -1.9938 35 1 6.0521 -6.6728 -1.9959 36 1 7.4446 -7.3694 -3.8848 37 1 6.0109 -6.5142 -4.5026 38 1 8.6728 -6.7801 -5.9168 39 1 7.2392 -5.9254 -6.5352 40 1 9.5127 -6.0588 -9.4292 41 1 1.6888 -2.1420 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815250952.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:44 Heat of formation + Delta-G solvation = -140.822207 kcal Electronic energy + Delta-G solvation = -21865.349053 eV Core-core repulsion = 18322.942010 eV Total energy + Delta-G solvation = -3542.407043 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.63574 -41.13263 -38.79893 -37.54509 -35.69730 -34.95425 -34.48437 -32.06072 -31.10796 -29.03667 -28.15472 -26.50943 -24.58468 -24.11482 -23.56608 -22.23917 -21.34305 -18.86054 -18.69140 -18.06123 -17.86612 -17.62907 -17.43653 -17.09465 -16.45034 -16.22961 -15.46730 -15.23321 -15.07902 -14.97001 -14.27817 -14.15106 -13.95660 -13.92555 -13.78752 -13.57954 -13.24315 -13.23121 -13.07235 -12.91880 -12.70687 -12.49095 -12.43524 -12.05487 -12.00785 -11.71461 -11.55719 -11.28965 -10.90357 -10.54923 -10.37719 -10.28034 -9.73989 -8.33296 -6.45388 0.11893 0.32809 1.16196 1.40159 1.42614 1.54795 1.69622 2.33911 2.81448 3.00681 3.06005 3.44423 3.63551 3.81143 3.87352 3.93075 4.01349 4.05320 4.10165 4.12581 4.15850 4.39210 4.42261 4.50547 4.54527 4.66797 4.70372 4.83244 4.84659 4.86258 4.94295 5.07513 5.16607 5.23230 5.31469 5.35795 5.46252 5.53497 5.80763 5.94156 6.48861 6.70207 6.78860 7.03194 7.26213 8.78863 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016439 B = 0.002481 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.835415 B =11284.807633 C =12300.612582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.136 4.136 3 C 0.078 3.922 4 N -0.510 5.510 5 C 0.079 3.921 6 C -0.129 4.129 7 C -0.054 4.054 8 C -0.104 4.104 9 C 0.461 3.539 10 O -0.538 6.538 11 O -0.362 6.362 12 C 0.078 3.922 13 C 0.052 3.948 14 O -0.409 6.409 15 C 0.208 3.792 16 C -0.550 4.550 17 H 0.060 0.940 18 C 0.007 3.993 19 N -0.929 5.929 20 Si 0.982 3.018 21 H -0.268 1.268 22 H -0.273 1.273 23 H -0.266 1.266 24 C -0.078 4.078 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.171 0.829 29 H 0.161 0.839 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.056 0.944 38 H -0.008 1.008 39 H -0.010 1.010 40 H 0.271 0.729 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.202 8.716 18.254 27.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.138 4.138 3 C -0.079 4.079 4 N -0.218 5.218 5 C -0.077 4.077 6 C -0.131 4.131 7 C -0.092 4.092 8 C -0.141 4.141 9 C 0.306 3.694 10 O -0.428 6.428 11 O -0.278 6.278 12 C 0.005 3.995 13 C -0.024 4.024 14 O -0.330 6.330 15 C 0.133 3.867 16 C -0.588 4.588 17 H 0.078 0.922 18 C -0.192 4.192 19 N -0.568 5.568 20 Si 0.805 3.195 21 H -0.193 1.193 22 H -0.198 1.198 23 H -0.190 1.190 24 C -0.104 4.104 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.188 0.812 29 H 0.178 0.822 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.144 0.856 33 H 0.132 0.868 34 H 0.089 0.911 35 H 0.127 0.873 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.010 0.990 39 H 0.008 0.992 40 H 0.080 0.920 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -17.557 9.424 18.460 27.163 hybrid contribution 0.326 -0.907 -0.642 1.158 sum -17.231 8.517 17.817 26.209 Atomic orbital electron populations 1.20793 0.88051 1.04241 1.03496 1.21261 0.99143 0.93563 0.99798 1.23093 0.89645 0.98948 0.96171 1.67683 1.09568 1.31985 1.12568 1.22915 1.00980 0.87450 0.96378 1.20801 0.94981 0.95877 1.01461 1.20236 1.00587 0.93965 0.94453 1.21463 1.01199 0.91356 1.00077 1.24306 0.77432 0.86628 0.80993 1.90633 1.54181 1.64440 1.33582 1.86603 1.65537 1.40441 1.35216 1.23170 0.95430 0.84418 0.96518 1.22661 0.94734 0.92936 0.92118 1.87860 1.68184 1.47420 1.29496 1.19873 0.93529 0.95156 0.78162 1.21378 1.30887 1.07072 0.99416 0.92211 1.25943 0.97848 0.98694 0.96682 1.70058 1.45947 1.29717 1.11081 0.85194 0.78441 0.78447 0.77414 1.19282 1.19810 1.18985 1.21761 0.93128 0.99484 0.96038 0.90042 0.90271 0.90028 0.81199 0.82190 0.89987 0.89192 0.85611 0.86778 0.91131 0.87262 0.90118 0.92532 0.99005 0.99233 0.91980 0.82678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.04 71.24 0.72 -0.04 16 2 C -0.14 -1.79 5.90 -19.77 -0.12 -1.91 16 3 C 0.08 1.28 10.86 84.68 0.92 2.20 16 4 N -0.51 -10.87 10.36 -195.85 -2.03 -12.90 16 5 C 0.08 1.51 10.86 84.67 0.92 2.43 16 6 C -0.13 -2.08 5.15 -19.77 -0.10 -2.18 16 7 C -0.05 -0.87 4.66 29.85 0.14 -0.73 16 8 C -0.10 -1.87 5.79 29.84 0.17 -1.70 16 9 C 0.46 12.20 7.96 71.23 0.57 12.76 16 10 O -0.54 -16.16 15.73 21.97 0.35 -15.81 16 11 O -0.36 -11.46 10.19 -48.80 -0.50 -11.95 16 12 C 0.08 2.37 5.84 71.98 0.42 2.79 16 13 C 0.05 1.88 6.33 71.98 0.46 2.33 16 14 O -0.41 -20.09 10.30 -145.56 -1.50 -21.59 16 15 C 0.21 11.62 5.69 71.24 0.41 12.03 16 16 C -0.55 -32.92 9.43 25.60 0.24 -32.68 16 17 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 18 C 0.01 0.40 5.46 84.65 0.46 0.86 16 19 N -0.93 -55.53 13.29 21.45 0.28 -55.24 16 20 Si 0.98 44.41 29.54 68.60 2.03 46.44 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 C -0.08 -1.07 9.54 22.47 0.21 -0.85 16 25 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.08 0.41 8.10 -2.39 -0.02 0.40 16 27 H 0.08 0.40 8.09 -2.39 -0.02 0.38 16 28 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 29 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 30 H 0.08 1.41 8.05 -2.38 -0.02 1.39 16 31 H 0.09 1.35 8.05 -2.39 -0.02 1.33 16 32 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 2.23 8.13 -2.39 -0.02 2.21 16 35 H 0.11 2.62 8.13 -2.39 -0.02 2.60 16 36 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 39 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 41 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -74.04 360.10 5.05 -68.99 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 1.01 Total: 6.75 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 5.41 Total: -4.68 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: -1.74 Total: -68.14 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -1.65 Total: -49.36 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -74.04 5.05 -68.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815250952.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.835 kcal (2) G-P(sol) polarization free energy of solvation -74.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds