Wall clock time and date at job start Tue Mar 31 2020 07:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47244 * 2 1 4 4 C 1.53002 * 109.47074 * 239.99693 * 2 1 3 5 5 C 1.50694 * 109.47096 * 60.00480 * 4 2 1 6 6 O 1.20827 * 119.99965 * 359.97438 * 5 4 2 7 7 O 1.34227 * 120.00162 * 179.97438 * 5 4 2 8 8 N 1.46907 * 109.47013 * 119.99981 * 2 1 3 9 9 C 1.46901 * 110.99930 * 299.99924 * 8 2 1 10 10 C 1.50695 * 109.46891 * 179.97438 * 9 8 2 11 11 C 1.38299 * 119.93247 * 90.00141 * 10 9 8 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47375 * 119.99795 * 19 17 15 22 22 H 1.48506 * 109.47301 * 239.99793 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.09000 * 109.47128 * 300.00036 * 1 2 3 26 26 H 1.08995 * 109.47182 * 60.00236 * 1 2 3 27 27 H 1.09003 * 109.47167 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47260 * 299.99777 * 3 2 1 30 30 H 1.09000 * 109.47087 * 59.99940 * 3 2 1 31 31 H 1.09008 * 109.47010 * 180.02562 * 4 2 1 32 32 H 1.09002 * 109.47358 * 299.99738 * 4 2 1 33 33 H 0.96700 * 116.99880 * 179.97438 * 7 5 4 34 34 H 1.00900 * 111.00053 * 176.04386 * 8 2 1 35 35 H 1.08998 * 109.46720 * 60.00340 * 9 8 2 36 36 H 1.08996 * 109.47268 * 299.99941 * 9 8 2 37 37 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 38 38 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 39 39 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 41 41 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 8 0.8428 0.9712 -2.3688 7 8 1.8624 -0.4692 -3.6988 8 7 2.0196 -0.6925 1.1995 9 6 1.5486 -0.0264 2.4211 10 6 2.0692 -0.7637 3.6279 11 6 3.2864 -0.4097 4.1808 12 6 3.7660 -1.0831 5.2870 13 6 3.0247 -2.1172 5.8439 14 8 3.4932 -2.7807 6.9316 15 6 4.6271 -2.3137 7.4921 16 1 5.1641 -1.5003 7.0270 17 6 5.1038 -2.8779 8.6656 18 7 4.4494 -3.8684 9.2324 19 14 6.6743 -2.2304 9.4424 20 1 7.2147 -1.1213 8.6159 21 1 6.3810 -1.7317 10.8100 22 1 7.6762 -3.3239 9.5186 23 6 1.8057 -2.4745 5.2826 24 6 1.3290 -1.7934 4.1798 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1299 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 -0.7217 -1.2490 32 1 1.6767 -1.7490 -1.2492 33 1 1.5164 0.0195 -4.4580 34 1 3.0261 -0.7627 1.1910 35 1 0.4587 -0.0266 2.4379 36 1 1.9121 1.0011 2.4379 37 1 3.8622 0.3947 3.7476 38 1 4.7163 -0.8060 5.7185 39 1 4.7831 -4.2633 10.0531 40 1 1.2291 -3.2811 5.7107 41 1 0.3790 -2.0678 3.7456 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826538275.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:41 Heat of formation + Delta-G solvation = -92.166643 kcal Electronic energy + Delta-G solvation = -22812.928887 eV Core-core repulsion = 19272.631708 eV Total energy + Delta-G solvation = -3540.297179 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.90146 -39.13930 -38.18976 -36.66837 -36.08638 -32.67658 -31.98689 -30.14808 -29.09881 -28.46875 -27.42719 -25.61009 -24.36360 -22.22774 -21.92719 -20.35269 -19.34719 -18.43735 -17.96891 -17.03367 -16.85483 -16.30913 -15.76582 -15.03595 -14.60952 -14.53002 -14.36535 -13.88447 -13.71324 -13.60286 -13.37762 -13.19273 -12.90747 -12.67599 -12.43124 -12.18787 -12.14115 -11.82011 -11.62198 -11.32130 -11.22447 -11.09186 -11.04057 -10.80406 -10.58428 -10.54544 -10.42770 -10.39707 -9.32323 -8.83850 -8.37836 -8.15118 -7.16893 -6.45025 -4.03755 1.88451 2.24188 2.27473 2.71436 3.11943 3.13468 3.18948 3.96549 4.25767 4.35961 4.62112 4.70734 4.91243 5.10208 5.12580 5.24460 5.29117 5.31294 5.37494 5.47387 5.62128 5.65901 5.75921 5.79002 5.85878 5.86998 5.96527 6.07410 6.19944 6.23582 6.38487 6.44984 6.72664 6.91308 7.02369 7.09330 7.28103 7.35538 7.44463 7.48742 7.59485 7.84863 8.00282 9.00807 9.71593 10.73160 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.035344 B = 0.002579 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.033888 B =10854.249238 C =11106.239586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.122 3.878 3 C -0.196 4.196 4 C -0.105 4.105 5 C 0.482 3.518 6 O -0.507 6.507 7 O -0.519 6.519 8 N -0.673 5.673 9 C 0.115 3.885 10 C -0.184 4.184 11 C -0.066 4.066 12 C -0.235 4.235 13 C 0.156 3.844 14 O -0.179 6.179 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.194 4.194 24 C -0.052 4.052 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.409 0.591 34 H 0.341 0.659 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.102 0.898 38 H 0.125 0.875 39 H 0.269 0.731 40 H 0.116 0.884 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.318 7.929 -20.703 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.031 3.969 3 C -0.255 4.255 4 C -0.143 4.143 5 C 0.325 3.675 6 O -0.396 6.396 7 O -0.330 6.330 8 N -0.304 5.304 9 C -0.012 4.012 10 C -0.186 4.186 11 C -0.085 4.085 12 C -0.254 4.254 13 C 0.102 3.898 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.498 5.498 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.214 4.214 24 C -0.071 4.071 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.134 0.866 33 H 0.268 0.732 34 H 0.160 0.840 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.120 0.880 38 H 0.143 0.857 39 H 0.079 0.921 40 H 0.134 0.866 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.919 7.164 -19.987 21.794 hybrid contribution 1.293 1.430 -0.047 1.928 sum -3.626 8.593 -20.034 22.098 Atomic orbital electron populations 1.22132 0.93238 1.02411 1.03225 1.20633 0.96289 0.91236 0.88763 1.22801 1.00567 0.98000 1.04112 1.21376 1.03163 1.01392 0.88322 1.23454 0.76957 0.82398 0.84717 1.90627 1.35867 1.26304 1.86797 1.84557 1.72333 1.59158 1.16990 1.60730 1.16408 1.52954 1.00342 1.20702 0.99769 0.94182 0.86578 1.19126 0.97577 1.02124 0.99727 1.20586 0.94709 0.97955 0.95207 1.21116 1.02678 1.01214 1.00387 1.19410 0.92054 0.90247 0.88092 1.83980 1.39717 1.48391 1.36099 1.21368 0.99496 1.18856 1.07020 0.89055 1.25292 0.99475 0.96148 0.95655 1.70046 1.38482 1.22482 1.18755 0.85649 0.79952 0.78716 0.79112 1.19138 1.20153 1.20151 1.20227 0.96226 1.04695 1.00228 1.20467 0.98307 0.94099 0.94185 0.92288 0.90326 0.92257 0.93203 0.89952 0.91973 0.87724 0.86641 0.73249 0.84020 0.90722 0.94898 0.87994 0.85693 0.92077 0.86598 0.87073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 7.94 37.16 0.30 -1.29 16 2 C 0.12 1.21 0.71 -131.60 -0.09 1.11 16 3 C -0.20 -1.98 7.93 37.15 0.29 -1.68 16 4 C -0.10 -0.85 5.14 -27.88 -0.14 -0.99 16 5 C 0.48 4.08 7.74 36.00 0.28 4.36 16 6 O -0.51 -5.44 12.11 -18.75 -0.23 -5.67 16 7 O -0.52 -3.33 13.42 -39.25 -0.53 -3.86 16 8 N -0.67 -7.78 6.08 -101.22 -0.62 -8.39 16 9 C 0.12 1.51 5.02 -4.98 -0.03 1.48 16 10 C -0.18 -3.05 5.40 -104.58 -0.56 -3.62 16 11 C -0.07 -1.17 9.69 -39.61 -0.38 -1.56 16 12 C -0.23 -5.04 9.17 -39.39 -0.36 -5.41 16 13 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 14 O -0.18 -5.10 9.76 0.05 0.00 -5.10 16 15 C -0.39 -10.92 9.49 30.89 0.29 -10.63 16 16 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 17 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 18 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 19 Si 0.94 20.50 29.55 -169.99 -5.02 15.47 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 C -0.19 -4.11 9.99 -39.39 -0.39 -4.50 16 24 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 25 H 0.06 0.63 6.40 -51.93 -0.33 0.30 16 26 H 0.08 0.85 5.52 -51.93 -0.29 0.57 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.89 5.52 -51.93 -0.29 0.61 16 30 H 0.06 0.66 6.40 -51.93 -0.33 0.33 16 31 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.41 0.96 9.10 45.56 0.41 1.37 16 34 H 0.34 3.87 8.71 -39.29 -0.34 3.53 16 35 H 0.07 0.96 6.24 -51.93 -0.32 0.63 16 36 H 0.03 0.42 6.25 -51.93 -0.32 0.09 16 37 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 39 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 40 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 41 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 336.02 15.07 5.06 5.06 Total: -1.00 -32.00 336.02 -6.59 -38.59 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -4.48 Total: 8.04 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -1.54 Total: -19.57 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.14 Total: -32.96 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.75 Total: -14.63 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.00 -6.59 -38.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826538275.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.579 kcal (2) G-P(sol) polarization free energy of solvation -31.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds