Wall clock time and date at job start Tue Mar 31 2020 07:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47244 * 2 1 4 4 C 1.53002 * 109.47074 * 239.99693 * 2 1 3 5 5 C 1.50694 * 109.47096 * 60.00480 * 4 2 1 6 6 O 1.20827 * 119.99965 * 359.97438 * 5 4 2 7 7 O 1.34227 * 120.00162 * 179.97438 * 5 4 2 8 8 N 1.46907 * 109.47013 * 119.99981 * 2 1 3 9 9 C 1.46901 * 110.99930 * 299.99924 * 8 2 1 10 10 C 1.50695 * 109.46891 * 179.97438 * 9 8 2 11 11 C 1.38299 * 119.93247 * 90.00141 * 10 9 8 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47375 * 119.99795 * 19 17 15 22 22 H 1.48506 * 109.47301 * 239.99793 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.09000 * 109.47128 * 300.00036 * 1 2 3 26 26 H 1.08995 * 109.47182 * 60.00236 * 1 2 3 27 27 H 1.09003 * 109.47167 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47260 * 299.99777 * 3 2 1 30 30 H 1.09000 * 109.47087 * 59.99940 * 3 2 1 31 31 H 1.09008 * 109.47010 * 180.02562 * 4 2 1 32 32 H 1.09002 * 109.47358 * 299.99738 * 4 2 1 33 33 H 0.96700 * 116.99880 * 179.97438 * 7 5 4 34 34 H 1.00900 * 111.00053 * 176.04386 * 8 2 1 35 35 H 1.08998 * 109.46720 * 60.00340 * 9 8 2 36 36 H 1.08996 * 109.47268 * 299.99941 * 9 8 2 37 37 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 38 38 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 39 39 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 41 41 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 8 0.8428 0.9712 -2.3688 7 8 1.8624 -0.4692 -3.6988 8 7 2.0196 -0.6925 1.1995 9 6 1.5486 -0.0264 2.4211 10 6 2.0692 -0.7637 3.6279 11 6 3.2864 -0.4097 4.1808 12 6 3.7660 -1.0831 5.2870 13 6 3.0247 -2.1172 5.8439 14 8 3.4932 -2.7807 6.9316 15 6 4.6271 -2.3137 7.4921 16 1 5.1641 -1.5003 7.0270 17 6 5.1038 -2.8779 8.6656 18 7 4.4494 -3.8684 9.2324 19 14 6.6743 -2.2304 9.4424 20 1 7.2147 -1.1213 8.6159 21 1 6.3810 -1.7317 10.8100 22 1 7.6762 -3.3239 9.5186 23 6 1.8057 -2.4745 5.2826 24 6 1.3290 -1.7934 4.1798 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1299 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.1300 -0.7217 -1.2490 32 1 1.6767 -1.7490 -1.2492 33 1 1.5164 0.0195 -4.4580 34 1 3.0261 -0.7627 1.1910 35 1 0.4587 -0.0266 2.4379 36 1 1.9121 1.0011 2.4379 37 1 3.8622 0.3947 3.7476 38 1 4.7163 -0.8060 5.7185 39 1 4.7831 -4.2633 10.0531 40 1 1.2291 -3.2811 5.7107 41 1 0.3790 -2.0678 3.7456 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826538275.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:41 Heat of formation + Delta-G solvation = -114.794880 kcal Electronic energy + Delta-G solvation = -22813.910121 eV Core-core repulsion = 19272.631708 eV Total energy + Delta-G solvation = -3541.278413 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.57049 -40.76610 -39.23375 -38.03710 -36.89943 -34.39194 -33.36091 -31.74592 -30.27860 -29.35878 -28.22523 -27.48109 -25.67016 -23.57481 -23.01633 -21.79912 -20.15180 -19.81400 -19.05285 -18.83890 -17.50662 -16.96854 -16.92655 -16.44587 -16.25816 -15.70836 -15.51288 -15.36028 -15.23010 -14.84659 -14.45596 -14.31024 -14.09214 -13.82064 -13.76426 -13.50424 -13.05330 -12.95760 -12.90283 -12.57705 -12.45225 -12.30115 -12.10823 -11.99937 -11.96685 -11.86500 -11.66224 -11.19778 -11.13681 -10.78220 -9.74070 -9.31511 -8.86825 -8.45943 -6.13828 0.64221 0.70629 1.26482 1.35786 1.44018 1.54068 2.13232 2.18588 2.83132 3.15644 3.51969 3.58160 3.65825 3.91299 4.07073 4.13934 4.17769 4.26562 4.48687 4.52514 4.61484 4.64856 4.70296 4.74152 4.80317 4.87162 4.94525 5.07222 5.11999 5.14211 5.18118 5.30807 5.34779 5.41929 5.61489 5.74560 5.77684 5.85354 6.05065 6.13106 6.28531 6.52345 6.99083 7.07724 7.81125 8.77737 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.035344 B = 0.002579 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.033888 B =10854.249238 C =11106.239586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.126 3.874 3 C -0.192 4.192 4 C -0.105 4.105 5 C 0.487 3.513 6 O -0.534 6.534 7 O -0.516 6.516 8 N -0.675 5.675 9 C 0.120 3.880 10 C -0.155 4.155 11 C -0.061 4.061 12 C -0.242 4.242 13 C 0.113 3.887 14 O -0.234 6.234 15 C -0.411 4.411 16 H 0.102 0.898 17 C -0.025 4.025 18 N -0.922 5.922 19 Si 1.019 2.981 20 H -0.251 1.251 21 H -0.269 1.269 22 H -0.268 1.268 23 C -0.206 4.206 24 C -0.047 4.047 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.427 0.573 34 H 0.346 0.654 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.138 0.862 38 H 0.117 0.883 39 H 0.272 0.728 40 H 0.110 0.890 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.940 9.749 -23.332 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.035 3.965 3 C -0.251 4.251 4 C -0.142 4.142 5 C 0.331 3.669 6 O -0.425 6.425 7 O -0.330 6.330 8 N -0.307 5.307 9 C -0.008 4.008 10 C -0.156 4.156 11 C -0.080 4.080 12 C -0.262 4.262 13 C 0.063 3.937 14 O -0.141 6.141 15 C -0.488 4.488 16 H 0.119 0.881 17 C -0.222 4.222 18 N -0.560 5.560 19 Si 0.839 3.161 20 H -0.174 1.174 21 H -0.194 1.194 22 H -0.194 1.194 23 C -0.225 4.225 24 C -0.065 4.065 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.288 0.712 34 H 0.164 0.836 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.156 0.844 38 H 0.135 0.865 39 H 0.081 0.919 40 H 0.128 0.872 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.561 9.008 -22.700 24.844 hybrid contribution 0.965 0.977 0.395 1.429 sum -3.596 9.985 -22.305 24.701 Atomic orbital electron populations 1.22103 0.93639 1.02245 1.02831 1.20602 0.95912 0.91289 0.88732 1.22747 1.01032 0.97782 1.03492 1.21353 1.04116 1.01329 0.87434 1.23431 0.76311 0.81826 0.85324 1.90629 1.37127 1.27486 1.87235 1.84512 1.72086 1.59254 1.17124 1.60641 1.16792 1.53026 1.00208 1.20665 1.00293 0.94269 0.85596 1.19605 0.96130 1.00213 0.99672 1.20936 0.95313 0.98022 0.93698 1.21218 1.02353 1.01046 1.01545 1.19954 0.93745 0.91885 0.88116 1.83943 1.40835 1.50799 1.38530 1.21854 0.99897 1.19339 1.07661 0.88097 1.26596 1.03375 0.96288 0.95933 1.70192 1.41175 1.24836 1.19841 0.84521 0.75013 0.78518 0.78097 1.17421 1.19440 1.19351 1.20461 0.95562 1.05197 1.01322 1.20835 0.99436 0.93535 0.92729 0.92620 0.90820 0.92269 0.92387 0.90687 0.92474 0.86164 0.85972 0.71158 0.83558 0.89816 0.93532 0.84445 0.86528 0.91885 0.87187 0.83946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 7.94 71.98 0.57 -2.16 16 2 C 0.13 2.07 0.71 3.52 0.00 2.08 16 3 C -0.19 -3.26 7.93 71.98 0.57 -2.69 16 4 C -0.10 -1.36 5.14 29.85 0.15 -1.21 16 5 C 0.49 6.97 7.74 71.23 0.55 7.52 16 6 O -0.53 -10.35 12.11 21.96 0.27 -10.08 16 7 O -0.52 -5.19 13.42 -51.39 -0.69 -5.88 16 8 N -0.68 -12.98 6.08 -474.16 -2.88 -15.86 16 9 C 0.12 2.64 5.02 85.56 0.43 3.07 16 10 C -0.16 -4.63 5.40 -19.84 -0.11 -4.74 16 11 C -0.06 -2.02 9.69 22.25 0.22 -1.80 16 12 C -0.24 -10.41 9.17 22.39 0.21 -10.21 16 13 C 0.11 5.65 6.65 22.58 0.15 5.80 16 14 O -0.23 -14.22 9.76 -22.72 -0.22 -14.44 16 15 C -0.41 -24.05 9.49 67.92 0.64 -23.41 16 16 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 17 C -0.02 -1.41 5.49 84.84 0.47 -0.95 16 18 N -0.92 -56.98 13.67 21.62 0.30 -56.69 16 19 Si 1.02 42.96 29.55 68.60 2.03 44.99 16 20 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 21 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 23 C -0.21 -8.82 9.99 22.39 0.22 -8.60 16 24 C -0.05 -1.57 9.69 22.25 0.22 -1.35 16 25 H 0.05 1.02 6.40 -2.39 -0.02 1.01 16 26 H 0.07 1.44 5.52 -2.39 -0.01 1.43 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 1.44 5.52 -2.39 -0.01 1.43 16 30 H 0.06 1.02 6.40 -2.39 -0.02 1.00 16 31 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.43 0.88 9.10 -74.06 -0.67 0.21 16 34 H 0.35 6.39 8.71 -89.69 -0.78 5.61 16 35 H 0.08 1.78 6.24 -2.39 -0.01 1.77 16 36 H 0.05 0.95 6.25 -2.39 -0.01 0.94 16 37 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 38 H 0.12 5.12 5.64 -2.91 -0.02 5.11 16 39 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 41 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -73.55 336.02 2.72 -70.84 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -0.37 Total: 25.77 kcal Atomic # 6 Polarization: -42.94 SS G_CDS: 4.29 Total: -38.65 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -2.59 Total: -72.54 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.65 Total: -30.40 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -73.55 2.72 -70.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826538275.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.959 kcal (2) G-P(sol) polarization free energy of solvation -73.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds