Wall clock time and date at job start Tue Mar 31 2020 06:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38267 * 119.97205 * 2 1 4 4 C 1.38260 * 120.11505 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.97600 * 179.97438 * 4 3 2 6 6 C 1.38146 * 120.05648 * 359.97438 * 4 3 2 7 7 C 1.38733 * 119.94354 * 359.97438 * 6 4 3 8 8 O 1.35893 * 120.05986 * 180.02562 * 7 6 4 9 9 C 1.42893 * 117.00362 * 180.02562 * 8 7 6 10 10 C 1.53008 * 109.47573 * 180.02562 * 9 8 7 11 11 N 1.46503 * 109.46785 * 64.99464 * 10 9 8 12 12 C 1.36933 * 120.00335 * 270.00384 * 11 10 9 13 13 H 1.07994 * 120.00195 * 16.08453 * 12 11 10 14 14 C 1.38813 * 119.99976 * 196.08677 * 12 11 10 15 15 N 1.31622 * 119.99964 * 22.24428 * 14 12 11 16 16 Si 1.86795 * 120.00067 * 202.24723 * 14 12 11 17 17 H 1.48507 * 109.47131 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47700 * 119.99630 * 16 14 12 19 19 H 1.48501 * 109.47114 * 240.00099 * 16 14 12 20 20 C 1.46505 * 119.99601 * 90.00510 * 11 10 9 21 21 C 1.50704 * 109.47011 * 84.01348 * 20 11 10 22 22 O 1.20823 * 119.99828 * 0.02562 * 21 20 11 23 23 O 1.34233 * 119.99435 * 179.97438 * 21 20 11 24 24 C 1.38148 * 119.97808 * 180.23703 * 2 1 3 25 25 H 1.08996 * 109.47301 * 89.99727 * 1 2 3 26 26 H 1.08999 * 109.46330 * 209.99741 * 1 2 3 27 27 H 1.08994 * 109.46781 * 329.99533 * 1 2 3 28 28 H 1.08001 * 119.94531 * 359.97438 * 3 2 1 29 29 H 1.08993 * 109.47315 * 269.98034 * 5 4 3 30 30 H 1.09002 * 109.46728 * 29.98508 * 5 4 3 31 31 H 1.09006 * 109.47207 * 149.97840 * 5 4 3 32 32 H 1.07996 * 120.03072 * 179.97438 * 6 4 3 33 33 H 1.08999 * 109.47055 * 299.99876 * 9 8 7 34 34 H 1.09003 * 109.47518 * 60.00072 * 9 8 7 35 35 H 1.08996 * 109.47240 * 184.99780 * 10 9 8 36 36 H 1.08993 * 109.46935 * 305.00237 * 10 9 8 37 37 H 0.97002 * 119.99597 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.47194 * 204.01695 * 20 11 10 39 39 H 1.09000 * 109.47408 * 324.01389 * 20 11 10 40 40 H 0.96701 * 116.99247 * 180.02562 * 23 21 20 41 41 H 1.08002 * 120.01988 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1978 0.0000 4 6 3.5803 1.2012 -0.0005 5 6 4.3301 2.5085 -0.0011 6 6 4.2752 0.0072 -0.0005 7 6 3.5846 -1.1960 0.0005 8 8 4.2657 -2.3718 0.0011 9 6 3.4893 -3.5714 0.0016 10 6 4.4231 -4.7835 0.0028 11 7 5.1831 -4.8131 1.2549 12 6 6.3899 -4.1713 1.3388 13 1 6.6645 -3.4382 0.5948 14 6 7.2603 -4.4631 2.3800 15 7 7.1628 -5.6106 3.0173 16 14 8.5697 -3.2271 2.8769 17 1 8.4701 -2.0251 2.0104 18 1 8.3671 -2.8340 4.2945 19 1 9.9134 -3.8396 2.7202 20 6 4.6521 -5.5294 2.4173 21 6 5.0059 -6.9905 2.3117 22 8 5.6372 -7.3921 1.3631 23 8 4.6204 -7.8454 3.2721 24 6 2.1973 -1.1967 -0.0050 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6564 2.1323 -0.0004 29 1 4.5107 2.8233 -1.0288 30 1 3.7388 3.2666 0.5126 31 1 5.2829 2.3812 0.5127 32 1 5.3552 0.0104 -0.0014 33 1 2.8605 -3.5968 0.8916 34 1 2.8605 -3.5977 -0.8884 35 1 3.8339 -5.6962 -0.0863 36 1 5.1121 -4.7121 -0.8387 37 1 7.7708 -5.8143 3.7451 38 1 5.0850 -5.1156 3.3280 39 1 3.5681 -5.4193 2.4479 40 1 4.8710 -8.7727 3.1607 41 1 1.6572 -2.1320 -0.0092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832878319.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:05 Heat of formation + Delta-G solvation = -87.926892 kcal Electronic energy + Delta-G solvation = -23678.241828 eV Core-core repulsion = 20138.128499 eV Total energy + Delta-G solvation = -3540.113330 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88517 -38.72887 -37.57302 -35.65604 -34.40344 -33.45497 -31.87240 -30.60909 -28.88565 -27.16567 -27.09535 -26.51142 -23.81176 -21.85390 -21.36230 -20.43599 -19.67341 -17.25388 -16.83151 -16.70023 -15.90275 -15.74494 -15.56821 -15.03878 -14.81904 -14.11326 -13.88326 -13.79950 -13.40222 -13.32043 -13.22936 -13.04501 -12.85926 -12.53887 -12.13629 -11.90626 -11.67612 -11.53085 -11.29360 -11.19419 -10.94480 -10.87219 -10.64071 -10.48023 -10.24128 -10.15947 -9.96961 -9.85280 -9.20957 -8.53395 -8.46181 -7.80416 -7.05962 -5.88456 -3.19864 1.49161 1.70078 3.39139 3.47328 3.51427 3.72409 3.86257 3.92615 4.32315 4.58044 4.82232 4.89674 5.19534 5.21495 5.32431 5.35742 5.37547 5.48968 5.53211 5.61390 5.62299 5.73553 5.74972 5.80504 5.85498 5.91561 6.01425 6.23251 6.31674 6.33011 6.58739 6.65691 6.69779 6.77053 6.92136 7.01939 7.06110 7.79753 7.85805 7.93572 8.21275 9.06917 9.41395 9.73190 10.15088 11.23478 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.004726 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.660398 B = 5923.721666 C = 7253.882405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.048 4.048 3 C -0.174 4.174 4 C -0.047 4.047 5 C -0.113 4.113 6 C -0.163 4.163 7 C 0.152 3.848 8 O -0.284 6.284 9 C 0.042 3.958 10 C 0.146 3.854 11 N -0.562 5.562 12 C -0.237 4.237 13 H 0.085 0.915 14 C -0.004 4.004 15 N -0.909 5.909 16 Si 0.907 3.093 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.293 1.293 20 C 0.187 3.813 21 C 0.477 3.523 22 O -0.517 6.517 23 O -0.544 6.544 24 C -0.222 4.222 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.129 0.871 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.255 0.745 38 H 0.115 0.885 39 H 0.049 0.951 40 H 0.380 0.620 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.309 9.535 -4.253 16.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.048 4.048 3 C -0.192 4.192 4 C -0.047 4.047 5 C -0.169 4.169 6 C -0.182 4.182 7 C 0.105 3.895 8 O -0.195 6.195 9 C -0.035 4.035 10 C 0.018 3.982 11 N -0.281 5.281 12 C -0.366 4.366 13 H 0.103 0.897 14 C -0.201 4.201 15 N -0.555 5.555 16 Si 0.737 3.263 17 H -0.201 1.201 18 H -0.216 1.216 19 H -0.220 1.220 20 C 0.058 3.942 21 C 0.317 3.683 22 O -0.403 6.403 23 O -0.354 6.354 24 C -0.241 4.241 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.134 0.866 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.147 0.853 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.133 0.867 39 H 0.067 0.933 40 H 0.236 0.764 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.899 9.759 -4.366 15.996 hybrid contribution 0.855 -0.381 0.329 0.992 sum -11.045 9.377 -4.036 15.040 Atomic orbital electron populations 1.20778 0.91493 1.02586 1.02084 1.19612 0.95566 0.92624 0.97003 1.20653 0.93385 0.97147 1.08009 1.19615 0.93541 0.94481 0.97100 1.20781 1.00085 0.93857 1.02209 1.20320 1.00372 0.89425 1.08072 1.19182 0.90352 0.87167 0.92777 1.86340 1.34924 1.11551 1.86724 1.23829 0.95541 0.84766 0.99409 1.20878 0.94358 0.92202 0.90752 1.43964 1.20724 1.56924 1.06447 1.19370 0.93147 1.14024 1.10040 0.89737 1.24833 0.98231 0.96419 1.00651 1.69873 1.40217 1.19884 1.25554 0.86125 0.80808 0.81097 0.78242 1.20080 1.21589 1.22016 1.20283 0.95137 0.84386 0.94410 1.25349 0.75022 0.89810 0.78165 1.90508 1.36783 1.78438 1.34528 1.84638 1.75548 1.22498 1.52737 1.21105 0.93238 0.98579 1.11169 0.91310 0.91634 0.91665 0.86622 0.91207 0.91654 0.91329 0.85342 0.92733 0.93333 0.91905 0.91761 0.93454 0.86698 0.93289 0.76406 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 36.01 0.36 -0.72 16 2 C -0.05 -0.62 5.88 -104.64 -0.62 -1.24 16 3 C -0.17 -2.21 9.35 -39.56 -0.37 -2.58 16 4 C -0.05 -0.64 5.88 -104.65 -0.62 -1.26 16 5 C -0.11 -1.17 10.01 36.01 0.36 -0.81 16 6 C -0.16 -2.63 9.64 -39.43 -0.38 -3.01 16 7 C 0.15 2.61 6.69 -39.22 -0.26 2.35 16 8 O -0.28 -5.48 9.52 -19.40 -0.18 -5.67 16 9 C 0.04 0.72 5.08 37.16 0.19 0.91 16 10 C 0.15 2.90 6.07 -4.04 -0.02 2.88 16 11 N -0.56 -13.53 2.01 -174.61 -0.35 -13.88 16 12 C -0.24 -6.38 9.17 -15.06 -0.14 -6.52 16 13 H 0.08 2.30 7.82 -52.49 -0.41 1.89 16 14 C 0.00 -0.12 4.86 -17.43 -0.08 -0.21 16 15 N -0.91 -26.02 9.32 55.49 0.52 -25.50 16 16 Si 0.91 22.06 29.61 -169.99 -5.03 17.03 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 20 C 0.19 4.32 5.49 -5.19 -0.03 4.29 16 21 C 0.48 11.37 6.55 36.01 0.24 11.61 16 22 O -0.52 -14.06 16.90 -18.75 -0.32 -14.38 16 23 O -0.54 -10.98 13.42 -39.27 -0.53 -11.50 16 24 C -0.22 -3.29 8.69 -39.43 -0.34 -3.63 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 27 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 28 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 32 H 0.13 2.08 8.06 -52.49 -0.42 1.65 16 33 H 0.05 0.90 7.67 -51.93 -0.40 0.50 16 34 H 0.05 0.69 7.65 -51.93 -0.40 0.29 16 35 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 36 H 0.06 1.34 8.04 -51.93 -0.42 0.92 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.12 2.91 6.35 -51.93 -0.33 2.58 16 39 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 40 H 0.38 6.10 9.10 45.56 0.41 6.52 16 41 H 0.12 1.67 6.30 -52.49 -0.33 1.34 16 LS Contribution 347.63 15.07 5.24 5.24 Total: -1.00 -33.00 347.63 -7.59 -40.59 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -5.22 Total: 6.02 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -1.72 Total: 2.06 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.17 Total: -39.38 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -1.03 Total: -31.55 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.00 -7.59 -40.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832878319.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.339 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds