Wall clock time and date at job start Tue Mar 31 2020 06:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38267 * 119.97205 * 2 1 4 4 C 1.38260 * 120.11505 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.97600 * 179.97438 * 4 3 2 6 6 C 1.38146 * 120.05648 * 359.97438 * 4 3 2 7 7 C 1.38733 * 119.94354 * 359.97438 * 6 4 3 8 8 O 1.35893 * 120.05986 * 180.02562 * 7 6 4 9 9 C 1.42893 * 117.00362 * 180.02562 * 8 7 6 10 10 C 1.53008 * 109.47573 * 180.02562 * 9 8 7 11 11 N 1.46503 * 109.46785 * 64.99464 * 10 9 8 12 12 C 1.36933 * 120.00335 * 270.00384 * 11 10 9 13 13 H 1.07994 * 120.00195 * 16.08453 * 12 11 10 14 14 C 1.38813 * 119.99976 * 196.08677 * 12 11 10 15 15 N 1.31622 * 119.99964 * 22.24428 * 14 12 11 16 16 Si 1.86795 * 120.00067 * 202.24723 * 14 12 11 17 17 H 1.48507 * 109.47131 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47700 * 119.99630 * 16 14 12 19 19 H 1.48501 * 109.47114 * 240.00099 * 16 14 12 20 20 C 1.46505 * 119.99601 * 90.00510 * 11 10 9 21 21 C 1.50704 * 109.47011 * 84.01348 * 20 11 10 22 22 O 1.20823 * 119.99828 * 0.02562 * 21 20 11 23 23 O 1.34233 * 119.99435 * 179.97438 * 21 20 11 24 24 C 1.38148 * 119.97808 * 180.23703 * 2 1 3 25 25 H 1.08996 * 109.47301 * 89.99727 * 1 2 3 26 26 H 1.08999 * 109.46330 * 209.99741 * 1 2 3 27 27 H 1.08994 * 109.46781 * 329.99533 * 1 2 3 28 28 H 1.08001 * 119.94531 * 359.97438 * 3 2 1 29 29 H 1.08993 * 109.47315 * 269.98034 * 5 4 3 30 30 H 1.09002 * 109.46728 * 29.98508 * 5 4 3 31 31 H 1.09006 * 109.47207 * 149.97840 * 5 4 3 32 32 H 1.07996 * 120.03072 * 179.97438 * 6 4 3 33 33 H 1.08999 * 109.47055 * 299.99876 * 9 8 7 34 34 H 1.09003 * 109.47518 * 60.00072 * 9 8 7 35 35 H 1.08996 * 109.47240 * 184.99780 * 10 9 8 36 36 H 1.08993 * 109.46935 * 305.00237 * 10 9 8 37 37 H 0.97002 * 119.99597 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.47194 * 204.01695 * 20 11 10 39 39 H 1.09000 * 109.47408 * 324.01389 * 20 11 10 40 40 H 0.96701 * 116.99247 * 180.02562 * 23 21 20 41 41 H 1.08002 * 120.01988 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1978 0.0000 4 6 3.5803 1.2012 -0.0005 5 6 4.3301 2.5085 -0.0011 6 6 4.2752 0.0072 -0.0005 7 6 3.5846 -1.1960 0.0005 8 8 4.2657 -2.3718 0.0011 9 6 3.4893 -3.5714 0.0016 10 6 4.4231 -4.7835 0.0028 11 7 5.1831 -4.8131 1.2549 12 6 6.3899 -4.1713 1.3388 13 1 6.6645 -3.4382 0.5948 14 6 7.2603 -4.4631 2.3800 15 7 7.1628 -5.6106 3.0173 16 14 8.5697 -3.2271 2.8769 17 1 8.4701 -2.0251 2.0104 18 1 8.3671 -2.8340 4.2945 19 1 9.9134 -3.8396 2.7202 20 6 4.6521 -5.5294 2.4173 21 6 5.0059 -6.9905 2.3117 22 8 5.6372 -7.3921 1.3631 23 8 4.6204 -7.8454 3.2721 24 6 2.1973 -1.1967 -0.0050 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6564 2.1323 -0.0004 29 1 4.5107 2.8233 -1.0288 30 1 3.7388 3.2666 0.5126 31 1 5.2829 2.3812 0.5127 32 1 5.3552 0.0104 -0.0014 33 1 2.8605 -3.5968 0.8916 34 1 2.8605 -3.5977 -0.8884 35 1 3.8339 -5.6962 -0.0863 36 1 5.1121 -4.7121 -0.8387 37 1 7.7708 -5.8143 3.7451 38 1 5.0850 -5.1156 3.3280 39 1 3.5681 -5.4193 2.4479 40 1 4.8710 -8.7727 3.1607 41 1 1.6572 -2.1320 -0.0092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832878319.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:04 Heat of formation + Delta-G solvation = -107.687529 kcal Electronic energy + Delta-G solvation = -23679.098714 eV Core-core repulsion = 20138.128499 eV Total energy + Delta-G solvation = -3540.970215 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.06707 -40.55575 -38.83650 -37.39436 -36.25574 -34.39991 -33.69695 -31.89941 -30.41907 -28.89165 -28.02653 -27.65156 -25.54307 -23.42144 -22.59791 -21.85067 -21.11818 -18.85897 -18.52766 -18.37523 -17.33391 -17.17607 -16.82004 -16.69105 -16.42120 -16.01648 -15.33501 -15.17438 -14.72403 -14.60576 -14.43486 -13.99009 -13.92038 -13.74342 -13.41623 -13.30336 -13.13621 -12.91359 -12.73889 -12.62883 -12.47259 -12.28260 -12.24587 -12.06084 -11.97957 -11.86322 -11.63144 -11.37776 -11.12124 -10.55907 -9.50936 -8.99302 -8.96557 -7.96039 -5.26878 0.42186 0.59623 1.43257 1.46506 1.57299 1.98958 2.45463 2.48278 2.76659 2.84249 3.25073 3.53353 3.87987 3.93230 4.19207 4.24893 4.31630 4.41887 4.44675 4.48667 4.54252 4.62560 4.70345 4.73194 4.83530 4.88492 4.92213 5.01873 5.06012 5.14105 5.16615 5.24133 5.37509 5.48926 5.64181 5.69328 5.73559 6.02338 6.13261 6.23598 6.70864 7.05048 7.59277 7.79714 8.14765 9.13706 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.004726 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.660398 B = 5923.721666 C = 7253.882405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.049 4.049 3 C -0.174 4.174 4 C -0.048 4.048 5 C -0.112 4.112 6 C -0.193 4.193 7 C 0.124 3.876 8 O -0.319 6.319 9 C 0.053 3.947 10 C 0.144 3.856 11 N -0.576 5.576 12 C -0.234 4.234 13 H 0.072 0.928 14 C -0.053 4.053 15 N -0.933 5.933 16 Si 0.962 3.038 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.300 1.300 20 C 0.186 3.814 21 C 0.482 3.518 22 O -0.557 6.557 23 O -0.533 6.533 24 C -0.231 4.231 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.146 0.854 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.112 0.888 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.248 0.752 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.401 0.599 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.752 11.137 -4.366 18.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.049 4.049 3 C -0.192 4.192 4 C -0.049 4.049 5 C -0.168 4.168 6 C -0.212 4.212 7 C 0.078 3.922 8 O -0.232 6.232 9 C -0.024 4.024 10 C 0.018 3.982 11 N -0.296 5.296 12 C -0.364 4.364 13 H 0.090 0.910 14 C -0.247 4.247 15 N -0.580 5.580 16 Si 0.791 3.209 17 H -0.198 1.198 18 H -0.214 1.214 19 H -0.227 1.227 20 C 0.057 3.943 21 C 0.324 3.676 22 O -0.446 6.446 23 O -0.345 6.345 24 C -0.249 4.249 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.164 0.836 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.260 0.740 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.382 11.365 -4.481 18.870 hybrid contribution 1.512 -0.849 0.326 1.764 sum -12.870 10.516 -4.155 17.132 Atomic orbital electron populations 1.20848 0.88757 1.03767 1.03352 1.20080 0.97569 0.91999 0.95218 1.21075 0.93091 0.98448 1.06546 1.19986 0.94386 0.94699 0.95780 1.20848 0.99875 0.92756 1.03334 1.20460 0.99963 0.90568 1.10188 1.19444 0.91563 0.86487 0.94755 1.86260 1.36529 1.12722 1.87674 1.23606 0.94525 0.83097 1.01177 1.21027 0.94252 0.94446 0.88468 1.44091 1.20250 1.57139 1.08145 1.19444 0.94061 1.13504 1.09383 0.90999 1.25420 1.00336 0.97754 1.01231 1.70000 1.41036 1.21014 1.25990 0.85277 0.78416 0.79367 0.77818 1.19755 1.21365 1.22736 1.20309 0.97100 0.83781 0.93119 1.25411 0.74012 0.90438 0.77784 1.90491 1.38636 1.79269 1.36210 1.84557 1.74865 1.23851 1.51192 1.21286 0.92256 1.00023 1.11358 0.89839 0.91087 0.89935 0.83579 0.89838 0.89490 0.91812 0.86971 0.92021 0.90267 0.90228 0.93531 0.94230 0.89076 0.89295 0.74025 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 10.01 71.24 0.71 -1.00 16 2 C -0.05 -1.13 5.88 -19.88 -0.12 -1.25 16 3 C -0.17 -3.92 9.35 22.28 0.21 -3.71 16 4 C -0.05 -1.25 5.88 -19.88 -0.12 -1.36 16 5 C -0.11 -2.10 10.01 71.24 0.71 -1.39 16 6 C -0.19 -6.33 9.64 22.37 0.22 -6.12 16 7 C 0.12 4.26 6.69 22.51 0.15 4.41 16 8 O -0.32 -12.55 9.52 -92.35 -0.88 -13.43 16 9 C 0.05 1.76 5.08 71.98 0.37 2.13 16 10 C 0.14 5.73 6.07 86.38 0.52 6.26 16 11 N -0.58 -28.01 2.01 -706.33 -1.42 -29.43 16 12 C -0.23 -12.90 9.17 84.03 0.77 -12.13 16 13 H 0.07 4.07 7.82 -2.91 -0.02 4.04 16 14 C -0.05 -3.00 4.86 84.86 0.41 -2.59 16 15 N -0.93 -54.33 9.32 21.65 0.20 -54.12 16 16 Si 0.96 46.54 29.61 68.60 2.03 48.57 16 17 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 19 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 20 C 0.19 8.52 5.49 85.63 0.47 8.99 16 21 C 0.48 22.78 6.55 71.24 0.47 23.25 16 22 O -0.56 -30.45 16.90 21.97 0.37 -30.07 16 23 O -0.53 -20.80 13.42 -51.45 -0.69 -21.49 16 24 C -0.23 -6.49 8.69 22.37 0.19 -6.30 16 25 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 27 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 28 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 1.26 8.08 -2.39 -0.02 1.24 16 31 H 0.06 1.26 8.09 -2.38 -0.02 1.24 16 32 H 0.11 3.87 8.06 -2.91 -0.02 3.85 16 33 H 0.06 1.94 7.67 -2.39 -0.02 1.92 16 34 H 0.08 2.12 7.65 -2.39 -0.02 2.10 16 35 H 0.08 2.85 8.07 -2.39 -0.02 2.83 16 36 H 0.05 1.98 8.04 -2.39 -0.02 1.97 16 37 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 38 H 0.09 4.65 6.35 -2.39 -0.02 4.64 16 39 H 0.09 3.30 8.12 -2.39 -0.02 3.28 16 40 H 0.40 12.23 9.10 -74.06 -0.67 11.56 16 41 H 0.14 3.36 6.30 -2.91 -0.02 3.34 16 Total: -1.00 -72.62 347.63 4.95 -67.67 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.36 Total: 23.13 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 4.97 Total: 9.19 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -1.22 Total: -83.56 kcal Atomic # 8 Polarization: -63.80 SS G_CDS: -1.20 Total: -65.00 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -72.62 4.95 -67.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832878319.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.016 kcal (2) G-P(sol) polarization free energy of solvation -72.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds