Wall clock time and date at job start Tue Mar 31 2020 06:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38146 * 120.02359 * 2 1 4 4 C 1.38272 * 120.05275 * 179.70112 * 3 2 1 5 5 C 1.38260 * 120.11223 * 0.29639 * 4 3 2 6 6 C 1.38145 * 120.05528 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.02681 * 180.02562 * 6 5 4 8 8 C 1.38727 * 120.03336 * 180.24886 * 2 1 3 9 9 O 1.35909 * 120.05477 * 0.02562 * 8 2 1 10 10 C 1.42888 * 117.00216 * 265.56468 * 9 8 2 11 11 C 1.53002 * 109.47137 * 180.91109 * 10 9 8 12 12 N 1.46492 * 109.47317 * 65.43943 * 11 10 9 13 13 C 1.36937 * 120.00302 * 84.39983 * 12 11 10 14 14 H 1.07999 * 120.00120 * 345.37043 * 13 12 11 15 15 C 1.38820 * 120.00223 * 165.36506 * 13 12 11 16 16 N 1.31615 * 119.99713 * 358.53434 * 15 13 12 17 17 Si 1.86801 * 119.99919 * 178.53565 * 15 13 12 18 18 H 1.48500 * 109.47211 * 60.00035 * 17 15 13 19 19 H 1.48497 * 109.47030 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47093 * 300.00058 * 17 15 13 21 21 C 1.46501 * 120.00084 * 264.39928 * 12 11 10 22 22 C 1.50696 * 109.47305 * 265.05359 * 21 12 11 23 23 O 1.20825 * 120.00278 * 5.13635 * 22 21 12 24 24 O 1.34228 * 119.99864 * 185.12719 * 22 21 12 25 25 H 1.08999 * 109.46937 * 90.00422 * 1 2 3 26 26 H 1.08999 * 109.47085 * 209.99758 * 1 2 3 27 27 H 1.08998 * 109.47605 * 329.99715 * 1 2 3 28 28 H 1.08000 * 119.97048 * 359.97438 * 3 2 1 29 29 H 1.07994 * 119.93716 * 180.27219 * 4 3 2 30 30 H 1.07996 * 119.97183 * 180.02562 * 5 4 3 31 31 H 1.09007 * 109.47200 * 87.29065 * 7 6 5 32 32 H 1.09003 * 109.47260 * 207.28711 * 7 6 5 33 33 H 1.08999 * 109.47634 * 327.29348 * 7 6 5 34 34 H 1.08998 * 109.47511 * 300.90869 * 10 9 8 35 35 H 1.08997 * 109.47707 * 60.90765 * 10 9 8 36 36 H 1.09001 * 109.47195 * 185.43783 * 11 10 9 37 37 H 1.08998 * 109.47138 * 305.43490 * 11 10 9 38 38 H 0.96998 * 119.99880 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.47060 * 25.05632 * 21 12 11 40 40 H 1.09002 * 109.47086 * 145.04930 * 21 12 11 41 41 H 0.96705 * 117.00153 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1961 0.0000 4 6 3.5810 1.1968 0.0062 5 6 4.2752 0.0012 0.0063 6 6 3.5886 -1.1976 0.0007 7 6 4.3460 -2.5004 0.0013 8 6 2.2014 -1.2010 -0.0052 9 8 1.5236 -2.3790 -0.0109 10 6 1.2850 -2.9962 1.2555 11 6 0.5351 -4.3136 1.0476 12 7 1.3930 -5.2548 0.3236 13 6 2.3015 -6.0182 1.0069 14 1 2.5571 -5.7700 2.0264 15 6 2.8939 -7.1112 0.3893 16 7 2.5609 -7.4309 -0.8432 17 14 4.1636 -8.1282 1.3075 18 1 3.5488 -8.6983 2.5332 19 1 4.6400 -9.2309 0.4344 20 1 5.3108 -7.2642 1.6851 21 6 1.2789 -5.3794 -1.1317 22 6 0.3537 -6.5206 -1.4672 23 8 -0.2302 -7.1044 -0.5851 24 8 0.1782 -6.8886 -2.7461 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6581 2.1313 -0.0004 29 1 4.1194 2.1329 0.0107 30 1 5.3552 0.0044 0.0116 31 1 4.5660 -2.7923 1.0283 32 1 3.7412 -3.2726 -0.4742 33 1 5.2787 -2.3789 -0.5495 34 1 2.2367 -3.1939 1.7486 35 1 0.6853 -2.3310 1.8768 36 1 0.2682 -4.7365 2.0161 37 1 -0.3705 -4.1289 0.4698 38 1 2.9750 -8.1945 -1.2750 39 1 0.8789 -4.4537 -1.5453 40 1 2.2633 -5.5722 -1.5581 41 1 -0.4247 -7.6263 -2.9119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832966212.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:08 Heat of formation + Delta-G solvation = -83.004440 kcal Electronic energy + Delta-G solvation = -24468.264857 eV Core-core repulsion = 20928.364981 eV Total energy + Delta-G solvation = -3539.899876 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.91988 -38.49914 -37.12902 -35.49444 -34.17650 -33.37094 -31.82458 -30.76099 -28.91776 -27.05973 -26.46164 -26.36917 -23.67158 -21.73159 -21.08627 -20.65888 -19.84801 -17.48979 -16.70110 -16.47828 -16.18781 -15.30900 -15.17249 -15.00542 -14.51670 -13.95935 -13.90182 -13.86086 -13.36628 -13.08323 -12.87975 -12.80416 -12.55123 -12.48325 -12.03602 -11.61870 -11.51074 -11.37592 -11.19023 -11.15902 -10.97705 -10.80897 -10.74016 -10.31798 -10.11554 -10.00223 -9.85834 -9.31909 -9.04728 -8.55611 -8.43631 -8.23367 -7.04873 -5.86529 -3.27645 1.41169 1.47901 3.34966 3.40690 3.41297 3.67223 4.12551 4.29195 4.37492 4.73635 4.94467 4.96529 5.10911 5.32341 5.35186 5.41237 5.56815 5.66431 5.75118 5.75822 5.86817 5.93961 5.99105 6.00345 6.01524 6.13375 6.27219 6.44781 6.57286 6.58975 6.62922 6.67870 6.72277 6.86537 7.02414 7.16362 7.37957 7.62102 8.06091 8.08221 8.23183 9.07394 9.62297 9.76078 10.14514 11.20306 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016912 B = 0.005279 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.198245 B = 5303.071380 C = 6202.782365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.105 4.105 3 C -0.121 4.121 4 C -0.128 4.128 5 C -0.119 4.119 6 C -0.095 4.095 7 C -0.115 4.115 8 C 0.105 3.895 9 O -0.319 6.319 10 C 0.051 3.949 11 C 0.150 3.850 12 N -0.567 5.567 13 C -0.235 4.235 14 H 0.078 0.922 15 C -0.002 4.002 16 N -0.920 5.920 17 Si 0.920 3.080 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.284 1.284 21 C 0.201 3.799 22 C 0.489 3.511 23 O -0.544 6.544 24 O -0.541 6.541 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.037 0.963 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.259 0.741 39 H 0.049 0.951 40 H 0.120 0.880 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.282 14.646 0.403 14.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.106 4.106 3 C -0.139 4.139 4 C -0.147 4.147 5 C -0.137 4.137 6 C -0.096 4.096 7 C -0.171 4.171 8 C 0.061 3.939 9 O -0.236 6.236 10 C -0.026 4.026 11 C 0.023 3.977 12 N -0.287 5.287 13 C -0.364 4.364 14 H 0.095 0.905 15 C -0.197 4.197 16 N -0.569 5.569 17 Si 0.750 3.250 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.210 1.210 21 C 0.073 3.927 22 C 0.331 3.669 23 O -0.432 6.432 24 O -0.351 6.351 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.138 0.862 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.137 0.863 41 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -0.155 14.561 0.521 14.571 hybrid contribution 0.406 -1.193 0.568 1.382 sum 0.252 13.368 1.088 13.415 Atomic orbital electron populations 1.20655 0.90933 1.02384 1.02433 1.20201 0.96604 0.92518 1.01267 1.20831 0.94131 0.96866 1.02121 1.21028 0.94215 0.97761 1.01647 1.20920 0.99604 0.91670 1.01537 1.20424 0.93478 0.96307 0.99369 1.20752 0.99507 0.94351 1.02512 1.18512 0.89539 0.85862 1.00034 1.86070 1.74261 1.32888 1.30424 1.23713 1.00238 0.95076 0.83530 1.20872 0.92130 0.87280 0.97448 1.43762 1.39719 1.43392 1.01825 1.19288 1.14395 1.05370 0.97309 0.90459 1.24826 1.00772 0.97414 0.96736 1.69434 1.45360 1.29694 1.12413 0.86075 0.80550 0.79661 0.78687 1.21134 1.21596 1.21030 1.20335 0.98673 0.89469 0.84264 1.25074 0.77528 0.86262 0.78069 1.90466 1.48656 1.55699 1.48389 1.84632 1.64930 1.52229 1.33286 0.91168 0.91156 0.92136 0.86284 0.86396 0.86176 0.91387 0.89120 0.92181 0.92749 0.94497 0.91438 0.92996 0.92976 0.93303 0.86253 0.77014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 9.79 36.01 0.35 -0.93 16 2 C -0.11 -1.47 5.89 -104.47 -0.62 -2.09 16 3 C -0.12 -1.47 9.70 -39.60 -0.38 -1.86 16 4 C -0.13 -1.51 10.04 -39.56 -0.40 -1.91 16 5 C -0.12 -1.56 9.71 -39.61 -0.38 -1.94 16 6 C -0.10 -1.47 5.89 -104.47 -0.62 -2.09 16 7 C -0.11 -1.83 9.40 36.01 0.34 -1.49 16 8 C 0.10 1.69 5.67 -39.22 -0.22 1.47 16 9 O -0.32 -5.68 7.87 -19.45 -0.15 -5.83 16 10 C 0.05 0.88 5.98 37.16 0.22 1.10 16 11 C 0.15 2.97 6.04 -4.05 -0.02 2.94 16 12 N -0.57 -13.48 2.00 -174.61 -0.35 -13.83 16 13 C -0.23 -6.07 9.73 -15.06 -0.15 -6.22 16 14 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 15 C 0.00 -0.06 5.35 -17.43 -0.09 -0.16 16 16 N -0.92 -25.59 7.98 55.49 0.44 -25.14 16 17 Si 0.92 21.65 29.55 -169.99 -5.02 16.62 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.20 4.82 5.52 -5.20 -0.03 4.79 16 22 C 0.49 12.28 5.92 36.00 0.21 12.50 16 23 O -0.54 -15.35 17.03 -18.75 -0.32 -15.67 16 24 O -0.54 -11.82 13.42 -39.25 -0.53 -12.35 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.89 6.80 -51.93 -0.35 0.54 16 27 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.09 1.72 7.45 -51.93 -0.39 1.33 16 33 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 34 H 0.05 0.99 7.82 -51.93 -0.41 0.58 16 35 H 0.04 0.55 7.65 -51.93 -0.40 0.15 16 36 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 37 H 0.05 1.00 8.03 -51.93 -0.42 0.58 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.05 1.08 7.78 -51.93 -0.40 0.67 16 40 H 0.12 3.11 6.32 -51.93 -0.33 2.78 16 41 H 0.38 6.65 9.10 45.56 0.41 7.06 16 LS Contribution 345.63 15.07 5.21 5.21 Total: -1.00 -31.31 345.63 -7.71 -39.01 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.20 Total: 7.86 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -1.79 Total: 4.12 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.09 Total: -38.97 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -1.00 Total: -33.85 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.31 -7.71 -39.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832966212.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.992 kcal (2) G-P(sol) polarization free energy of solvation -31.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds