Wall clock time and date at job start Tue Mar 31 2020 06:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38146 * 120.02359 * 2 1 4 4 C 1.38272 * 120.05275 * 179.70112 * 3 2 1 5 5 C 1.38260 * 120.11223 * 0.29639 * 4 3 2 6 6 C 1.38145 * 120.05528 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.02681 * 180.02562 * 6 5 4 8 8 C 1.38727 * 120.03336 * 180.24886 * 2 1 3 9 9 O 1.35909 * 120.05477 * 0.02562 * 8 2 1 10 10 C 1.42888 * 117.00216 * 265.56468 * 9 8 2 11 11 C 1.53002 * 109.47137 * 180.91109 * 10 9 8 12 12 N 1.46492 * 109.47317 * 65.43943 * 11 10 9 13 13 C 1.36937 * 120.00302 * 84.39983 * 12 11 10 14 14 H 1.07999 * 120.00120 * 345.37043 * 13 12 11 15 15 C 1.38820 * 120.00223 * 165.36506 * 13 12 11 16 16 N 1.31615 * 119.99713 * 358.53434 * 15 13 12 17 17 Si 1.86801 * 119.99919 * 178.53565 * 15 13 12 18 18 H 1.48500 * 109.47211 * 60.00035 * 17 15 13 19 19 H 1.48497 * 109.47030 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47093 * 300.00058 * 17 15 13 21 21 C 1.46501 * 120.00084 * 264.39928 * 12 11 10 22 22 C 1.50696 * 109.47305 * 265.05359 * 21 12 11 23 23 O 1.20825 * 120.00278 * 5.13635 * 22 21 12 24 24 O 1.34228 * 119.99864 * 185.12719 * 22 21 12 25 25 H 1.08999 * 109.46937 * 90.00422 * 1 2 3 26 26 H 1.08999 * 109.47085 * 209.99758 * 1 2 3 27 27 H 1.08998 * 109.47605 * 329.99715 * 1 2 3 28 28 H 1.08000 * 119.97048 * 359.97438 * 3 2 1 29 29 H 1.07994 * 119.93716 * 180.27219 * 4 3 2 30 30 H 1.07996 * 119.97183 * 180.02562 * 5 4 3 31 31 H 1.09007 * 109.47200 * 87.29065 * 7 6 5 32 32 H 1.09003 * 109.47260 * 207.28711 * 7 6 5 33 33 H 1.08999 * 109.47634 * 327.29348 * 7 6 5 34 34 H 1.08998 * 109.47511 * 300.90869 * 10 9 8 35 35 H 1.08997 * 109.47707 * 60.90765 * 10 9 8 36 36 H 1.09001 * 109.47195 * 185.43783 * 11 10 9 37 37 H 1.08998 * 109.47138 * 305.43490 * 11 10 9 38 38 H 0.96998 * 119.99880 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.47060 * 25.05632 * 21 12 11 40 40 H 1.09002 * 109.47086 * 145.04930 * 21 12 11 41 41 H 0.96705 * 117.00153 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1961 0.0000 4 6 3.5810 1.1968 0.0062 5 6 4.2752 0.0012 0.0063 6 6 3.5886 -1.1976 0.0007 7 6 4.3460 -2.5004 0.0013 8 6 2.2014 -1.2010 -0.0052 9 8 1.5236 -2.3790 -0.0109 10 6 1.2850 -2.9962 1.2555 11 6 0.5351 -4.3136 1.0476 12 7 1.3930 -5.2548 0.3236 13 6 2.3015 -6.0182 1.0069 14 1 2.5571 -5.7700 2.0264 15 6 2.8939 -7.1112 0.3893 16 7 2.5609 -7.4309 -0.8432 17 14 4.1636 -8.1282 1.3075 18 1 3.5488 -8.6983 2.5332 19 1 4.6400 -9.2309 0.4344 20 1 5.3108 -7.2642 1.6851 21 6 1.2789 -5.3794 -1.1317 22 6 0.3537 -6.5206 -1.4672 23 8 -0.2302 -7.1044 -0.5851 24 8 0.1782 -6.8886 -2.7461 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6581 2.1313 -0.0004 29 1 4.1194 2.1329 0.0107 30 1 5.3552 0.0044 0.0116 31 1 4.5660 -2.7923 1.0283 32 1 3.7412 -3.2726 -0.4742 33 1 5.2787 -2.3789 -0.5495 34 1 2.2367 -3.1939 1.7486 35 1 0.6853 -2.3310 1.8768 36 1 0.2682 -4.7365 2.0161 37 1 -0.3705 -4.1289 0.4698 38 1 2.9750 -8.1945 -1.2750 39 1 0.8789 -4.4537 -1.5453 40 1 2.2633 -5.5722 -1.5581 41 1 -0.4247 -7.6263 -2.9119 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832966212.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:08 Heat of formation + Delta-G solvation = -100.622861 kcal Electronic energy + Delta-G solvation = -24469.028849 eV Core-core repulsion = 20928.364981 eV Total energy + Delta-G solvation = -3540.663868 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.04917 -40.43874 -38.44002 -37.21727 -36.12939 -34.41878 -33.61495 -31.94956 -30.55713 -28.82452 -27.71009 -27.45250 -25.43756 -23.13697 -22.45377 -21.77456 -21.67753 -18.93914 -18.50968 -18.24639 -17.49561 -17.02718 -16.83321 -16.26510 -15.89047 -15.84834 -15.49038 -15.19949 -14.88431 -14.36502 -14.15503 -13.93362 -13.77871 -13.68968 -13.48014 -13.28994 -13.02963 -12.82248 -12.72731 -12.68260 -12.38908 -12.21587 -12.15229 -12.00559 -11.96737 -11.81158 -11.78032 -11.05188 -10.62241 -10.54563 -9.45000 -9.32268 -8.96588 -7.88924 -5.29413 0.36041 0.45993 1.46274 1.49207 1.54221 2.14277 2.47642 2.59622 2.89222 3.11844 3.37325 3.63287 3.92664 3.99677 4.17630 4.39888 4.44742 4.47560 4.48299 4.56878 4.61858 4.72819 4.78895 4.80666 4.84791 4.88963 4.99766 5.04216 5.09522 5.30241 5.35038 5.40971 5.45233 5.57637 5.60166 5.61868 5.76419 6.00471 6.24796 6.25433 6.83403 7.07152 7.68584 7.85236 8.18630 9.15895 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016912 B = 0.005279 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.198245 B = 5303.071380 C = 6202.782365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.114 4.114 3 C -0.119 4.119 4 C -0.121 4.121 5 C -0.123 4.123 6 C -0.118 4.118 7 C -0.105 4.105 8 C 0.072 3.928 9 O -0.336 6.336 10 C 0.066 3.934 11 C 0.148 3.852 12 N -0.578 5.578 13 C -0.234 4.234 14 H 0.083 0.917 15 C -0.056 4.056 16 N -0.942 5.942 17 Si 0.976 3.024 18 H -0.287 1.287 19 H -0.299 1.299 20 H -0.272 1.272 21 C 0.208 3.792 22 C 0.492 3.508 23 O -0.579 6.579 24 O -0.535 6.535 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.151 0.849 29 H 0.152 0.848 30 H 0.139 0.861 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.249 0.751 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.021 17.295 0.874 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.115 4.115 3 C -0.136 4.136 4 C -0.139 4.139 5 C -0.141 4.141 6 C -0.118 4.118 7 C -0.161 4.161 8 C 0.028 3.972 9 O -0.253 6.253 10 C -0.010 4.010 11 C 0.022 3.978 12 N -0.298 5.298 13 C -0.363 4.363 14 H 0.101 0.899 15 C -0.248 4.248 16 N -0.592 5.592 17 Si 0.805 3.195 18 H -0.214 1.214 19 H -0.225 1.225 20 H -0.198 1.198 21 C 0.079 3.921 22 C 0.335 3.665 23 O -0.471 6.471 24 O -0.345 6.345 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.168 0.832 29 H 0.170 0.830 30 H 0.157 0.843 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 0.096 17.243 0.989 17.272 hybrid contribution 0.297 -1.886 0.376 1.946 sum 0.393 15.358 1.365 15.423 Atomic orbital electron populations 1.20678 0.89795 1.03029 1.02730 1.20467 0.97656 0.92362 1.00978 1.21238 0.94573 0.97316 1.00519 1.21454 0.94365 0.98540 0.99511 1.21183 1.00717 0.91274 1.00901 1.20495 0.93539 0.96734 1.01057 1.20585 0.99607 0.94088 1.01862 1.18804 0.90020 0.85898 1.02433 1.86024 1.74723 1.34134 1.30425 1.23354 0.99399 0.94293 0.83976 1.21017 0.92112 0.87598 0.97073 1.43888 1.40221 1.43799 1.01894 1.19583 1.14255 1.05014 0.97466 0.89935 1.25508 1.02950 0.98773 0.97583 1.69593 1.46408 1.29745 1.13471 0.85187 0.78988 0.78117 0.77196 1.21361 1.22506 1.19750 1.20170 0.97337 0.89854 0.84699 1.25240 0.76803 0.86105 0.78349 1.90440 1.50163 1.56943 1.49552 1.84560 1.65278 1.53086 1.31578 0.91004 0.92399 0.89586 0.83178 0.82987 0.84280 0.92011 0.92869 0.90710 0.94245 0.91912 0.91276 0.92615 0.94076 0.91701 0.88537 0.74735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.30 9.79 71.24 0.70 -1.60 16 2 C -0.11 -2.95 5.89 -19.77 -0.12 -3.07 16 3 C -0.12 -2.44 9.70 22.26 0.22 -2.23 16 4 C -0.12 -2.39 10.04 22.28 0.22 -2.17 16 5 C -0.12 -2.93 9.71 22.25 0.22 -2.71 16 6 C -0.12 -3.57 5.89 -19.77 -0.12 -3.69 16 7 C -0.10 -3.42 9.40 71.24 0.67 -2.75 16 8 C 0.07 2.29 5.67 22.50 0.13 2.41 16 9 O -0.34 -12.02 7.87 -92.52 -0.73 -12.74 16 10 C 0.07 2.27 5.98 71.98 0.43 2.70 16 11 C 0.15 5.88 6.04 86.38 0.52 6.41 16 12 N -0.58 -27.96 2.00 -706.36 -1.42 -29.38 16 13 C -0.23 -12.28 9.73 84.04 0.82 -11.46 16 14 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 15 C -0.06 -3.06 5.35 84.86 0.45 -2.60 16 16 N -0.94 -53.60 7.98 21.65 0.17 -53.43 16 17 Si 0.98 45.16 29.55 68.60 2.03 47.19 16 18 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 19 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 C 0.21 10.21 5.52 85.63 0.47 10.69 16 22 C 0.49 25.00 5.92 71.23 0.42 25.42 16 23 O -0.58 -33.13 17.03 21.97 0.37 -32.75 16 24 O -0.53 -23.27 13.42 -51.40 -0.69 -23.96 16 25 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.39 6.80 -2.39 -0.02 1.37 16 27 H 0.09 1.39 8.09 -2.39 -0.02 1.37 16 28 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 29 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 31 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.05 2.11 7.45 -2.39 -0.02 2.10 16 33 H 0.07 2.11 8.10 -2.39 -0.02 2.09 16 34 H 0.04 1.46 7.82 -2.39 -0.02 1.44 16 35 H 0.06 1.82 7.65 -2.39 -0.02 1.80 16 36 H 0.07 2.69 8.08 -2.39 -0.02 2.67 16 37 H 0.06 2.15 8.03 -2.39 -0.02 2.13 16 38 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 39 H 0.07 2.91 7.78 -2.39 -0.02 2.89 16 40 H 0.10 5.21 6.32 -2.39 -0.02 5.20 16 41 H 0.40 13.76 9.10 -74.05 -0.67 13.09 16 Total: -1.00 -68.10 345.63 5.14 -62.96 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.36 Total: 26.76 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: 5.03 Total: 15.35 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -1.24 Total: -82.81 kcal Atomic # 8 Polarization: -68.41 SS G_CDS: -1.04 Total: -69.46 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -68.10 5.14 -62.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832966212.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.660 kcal (2) G-P(sol) polarization free energy of solvation -68.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds