Wall clock time and date at job start Tue Mar 31 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38162 * 120.03031 * 2 1 4 4 C 1.38243 * 120.05464 * 180.29569 * 3 2 1 5 5 C 1.38289 * 120.11353 * 359.67376 * 4 3 2 6 6 C 1.38122 * 120.05389 * 0.02562 * 5 4 3 7 7 C 1.38716 * 120.02632 * 179.66957 * 2 1 3 8 8 O 1.35897 * 120.05418 * 0.02562 * 7 2 1 9 9 C 1.42903 * 116.99978 * 179.72193 * 8 7 2 10 10 C 1.52998 * 109.47194 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47088 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.47077 * 180.02562 * 11 10 9 13 13 C 1.36936 * 119.99883 * 89.99952 * 12 11 10 14 14 H 1.07995 * 119.99833 * 9.28852 * 13 12 11 15 15 C 1.38812 * 119.99625 * 189.27636 * 13 12 11 16 16 N 1.31613 * 120.00223 * 24.75842 * 15 13 12 17 17 Si 1.86802 * 119.99827 * 204.75018 * 15 13 12 18 18 H 1.48505 * 109.46878 * 60.00359 * 17 15 13 19 19 H 1.48495 * 109.46989 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47047 * 300.00780 * 17 15 13 21 21 C 1.46500 * 119.99622 * 270.00497 * 12 11 10 22 22 C 1.50701 * 109.47463 * 89.20853 * 21 12 11 23 23 O 1.20825 * 119.99856 * 359.97438 * 22 21 12 24 24 O 1.34231 * 120.00039 * 179.97438 * 22 21 12 25 25 H 1.08996 * 109.47302 * 270.32873 * 1 2 3 26 26 H 1.09002 * 109.46401 * 30.32192 * 1 2 3 27 27 H 1.08995 * 109.46939 * 150.32166 * 1 2 3 28 28 H 1.08003 * 119.97564 * 359.97438 * 3 2 1 29 29 H 1.08006 * 119.94794 * 179.69789 * 4 3 2 30 30 H 1.08002 * 119.97452 * 180.02562 * 5 4 3 31 31 H 1.08001 * 120.02921 * 180.02562 * 6 5 4 32 32 H 1.08996 * 109.46948 * 60.00163 * 9 8 7 33 33 H 1.08997 * 109.47171 * 300.00095 * 9 8 7 34 34 H 1.08997 * 109.47078 * 300.00077 * 10 9 8 35 35 H 1.09004 * 109.47003 * 60.00520 * 10 9 8 36 36 H 1.08997 * 109.47334 * 300.00055 * 11 10 9 37 37 H 1.09004 * 109.46664 * 60.00446 * 11 10 9 38 38 H 0.97001 * 120.00534 * 179.97438 * 16 15 13 39 39 H 1.09010 * 109.46866 * 209.20666 * 21 12 11 40 40 H 1.08998 * 109.47716 * 329.20155 * 21 12 11 41 41 H 0.96694 * 116.99915 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1967 -0.0062 5 6 4.2752 0.0008 -0.0056 6 6 3.5887 -1.1977 0.0007 7 6 2.2012 -1.2010 0.0069 8 8 1.5233 -2.3788 0.0132 9 6 2.3033 -3.5762 0.0140 10 6 1.3730 -4.7909 0.0207 11 6 2.2082 -6.0729 0.0208 12 7 1.3174 -7.2360 0.0266 13 6 0.8970 -7.7823 -1.1566 14 1 1.3356 -7.4560 -2.0880 15 6 -0.0926 -8.7557 -1.1587 16 7 -0.9545 -8.8201 -0.1661 17 14 -0.2012 -9.9741 -2.5705 18 1 1.0634 -10.7481 -2.6547 19 1 -1.3359 -10.9030 -2.3365 20 1 -0.4176 -9.2395 -3.8427 21 6 0.8763 -7.8144 1.2983 22 6 -0.3925 -7.1354 1.7458 23 8 -0.8782 -6.2580 1.0720 24 8 -0.9830 -7.5054 2.8931 25 1 -0.3634 0.0059 1.0276 26 1 -0.3632 0.8871 -0.5189 27 1 -0.3633 -0.8928 -0.5088 28 1 1.6586 2.1315 -0.0004 29 1 4.1197 2.1328 -0.0111 30 1 5.3552 0.0039 -0.0100 31 1 4.1313 -2.1314 0.0016 32 1 2.9355 -3.5974 0.9016 33 1 2.9288 -3.6030 -0.8783 34 1 0.7473 -4.7643 0.9127 35 1 0.7412 -4.7695 -0.8673 36 1 2.8336 -6.0992 -0.8714 37 1 2.8403 -6.0945 0.9086 38 1 -1.6463 -9.5001 -0.1677 39 1 0.6911 -8.8807 1.1676 40 1 1.6509 -7.6698 2.0514 41 1 -1.7946 -7.0408 3.1388 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832979050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:51 Heat of formation + Delta-G solvation = -86.241060 kcal Electronic energy + Delta-G solvation = -23427.763345 eV Core-core repulsion = 19887.723119 eV Total energy + Delta-G solvation = -3540.040227 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.11732 -38.70210 -37.46985 -36.00711 -34.36462 -33.02009 -32.44849 -30.64278 -29.72965 -27.41390 -26.72785 -25.61689 -23.19227 -21.73033 -21.57532 -20.56857 -19.86285 -17.89940 -16.91778 -16.59832 -15.97501 -15.89623 -15.63027 -15.18438 -15.02162 -14.39673 -14.17620 -13.93757 -13.60171 -13.38322 -13.15249 -12.96805 -12.52080 -12.27703 -12.19728 -11.85890 -11.52363 -11.38351 -11.30753 -11.25962 -10.90402 -10.82351 -10.61803 -10.52949 -10.32798 -10.06305 -9.89430 -9.71378 -9.10276 -8.85397 -8.56054 -8.04097 -7.18743 -5.97427 -3.24609 1.29382 1.46002 3.34612 3.39426 3.41831 3.44711 3.74664 3.94031 4.33481 4.57919 4.77515 4.81114 5.01523 5.20973 5.24441 5.26180 5.29384 5.34019 5.50112 5.60246 5.67095 5.75573 5.83463 5.87728 5.98010 6.20770 6.24773 6.32517 6.34183 6.38212 6.45156 6.51755 6.81769 6.83843 6.92463 7.03591 7.19173 7.62196 7.66486 7.91299 8.12085 8.97904 9.46881 9.68428 10.07685 11.14203 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020811 B = 0.003493 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.112577 B = 8014.432808 C = 8464.265655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.165 4.165 5 C -0.087 4.087 6 C -0.209 4.209 7 C 0.137 3.863 8 O -0.308 6.308 9 C 0.061 3.939 10 C -0.137 4.137 11 C 0.151 3.849 12 N -0.566 5.566 13 C -0.255 4.255 14 H 0.082 0.918 15 C 0.001 3.999 16 N -0.904 5.904 17 Si 0.910 3.090 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.284 1.284 21 C 0.188 3.812 22 C 0.476 3.524 23 O -0.512 6.512 24 O -0.545 6.545 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.043 0.957 38 H 0.259 0.741 39 H 0.115 0.885 40 H 0.052 0.948 41 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.002 13.622 3.583 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.124 4.124 3 C -0.104 4.104 4 C -0.183 4.183 5 C -0.105 4.105 6 C -0.228 4.228 7 C 0.090 3.910 8 O -0.221 6.221 9 C -0.015 4.015 10 C -0.177 4.177 11 C 0.024 3.976 12 N -0.286 5.286 13 C -0.384 4.384 14 H 0.100 0.900 15 C -0.197 4.197 16 N -0.549 5.549 17 Si 0.740 3.260 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.210 1.210 21 C 0.058 3.942 22 C 0.316 3.684 23 O -0.398 6.398 24 O -0.356 6.356 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.146 0.854 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.132 0.868 40 H 0.070 0.930 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 7.901 13.462 3.256 15.945 hybrid contribution -0.765 -0.248 -0.626 1.020 sum 7.136 13.214 2.630 15.246 Atomic orbital electron populations 1.20609 0.90540 1.02816 1.02277 1.19333 0.96640 0.90492 1.05899 1.20846 0.94113 0.96646 0.98792 1.20969 0.94206 0.97894 1.05217 1.20901 0.99571 0.91950 0.98127 1.21307 0.93178 0.99513 1.08754 1.18993 0.90463 0.86381 0.95137 1.86177 1.36177 1.12211 1.87512 1.23073 0.95144 0.82974 1.00272 1.22432 0.98919 0.91530 1.04830 1.20852 0.92005 0.85216 0.99489 1.44262 1.52402 1.29788 1.02117 1.19283 1.17173 1.15929 0.85986 0.89977 1.24766 0.95532 1.01087 0.98311 1.69825 1.16142 1.34931 1.34003 0.86227 0.77086 0.81206 0.81525 1.20919 1.21680 1.20980 1.20442 0.87920 0.99711 0.86110 1.25289 0.87524 0.79890 0.75686 1.90506 1.64395 1.31894 1.53008 1.84634 1.42117 1.65463 1.43346 0.91501 0.91973 0.90802 0.85750 0.86268 0.86111 0.85368 0.92756 0.92578 0.90703 0.90806 0.92661 0.93840 0.93103 0.86757 0.93025 0.76550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.79 36.01 0.35 -0.97 16 2 C -0.12 -1.67 5.89 -104.47 -0.62 -2.29 16 3 C -0.09 -0.97 9.70 -39.61 -0.38 -1.36 16 4 C -0.16 -1.75 10.04 -39.56 -0.40 -2.15 16 5 C -0.09 -0.97 10.04 -39.60 -0.40 -1.37 16 6 C -0.21 -2.72 9.04 -39.43 -0.36 -3.08 16 7 C 0.14 2.06 6.66 -39.22 -0.26 1.80 16 8 O -0.31 -5.26 9.18 -19.42 -0.18 -5.44 16 9 C 0.06 0.96 4.74 37.16 0.18 1.13 16 10 C -0.14 -2.67 5.15 -26.73 -0.14 -2.81 16 11 C 0.15 2.91 5.71 -4.04 -0.02 2.89 16 12 N -0.57 -13.38 2.09 -174.60 -0.37 -13.75 16 13 C -0.26 -6.69 9.70 -15.06 -0.15 -6.83 16 14 H 0.08 2.10 7.93 -52.49 -0.42 1.69 16 15 C 0.00 0.02 4.89 -17.43 -0.09 -0.07 16 16 N -0.90 -25.20 9.02 55.49 0.50 -24.70 16 17 Si 0.91 21.23 29.62 -169.99 -5.04 16.20 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.19 4.28 5.58 -5.19 -0.03 4.25 16 22 C 0.48 11.34 6.33 36.01 0.23 11.57 16 23 O -0.51 -13.74 14.42 -18.75 -0.27 -14.01 16 24 O -0.55 -11.15 13.42 -39.26 -0.53 -11.67 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 27 H 0.07 1.05 7.53 -51.93 -0.39 0.66 16 28 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 29 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 30 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.13 1.51 6.30 -52.49 -0.33 1.18 16 32 H 0.05 0.76 7.66 -51.93 -0.40 0.36 16 33 H 0.06 0.80 7.66 -51.93 -0.40 0.40 16 34 H 0.07 1.64 6.30 -51.93 -0.33 1.31 16 35 H 0.07 1.67 8.14 -51.93 -0.42 1.24 16 36 H 0.06 1.00 8.03 -51.93 -0.42 0.58 16 37 H 0.04 0.72 7.90 -51.93 -0.41 0.31 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.11 2.82 6.29 -51.92 -0.33 2.49 16 40 H 0.05 1.00 7.90 -51.93 -0.41 0.59 16 41 H 0.38 6.26 9.10 45.56 0.41 6.68 16 LS Contribution 341.80 15.07 5.15 5.15 Total: -1.00 -31.74 341.80 -7.88 -39.62 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.08 Total: 7.89 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -2.08 Total: 0.72 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.13 Total: -38.45 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.98 Total: -31.13 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.04 Total: 16.20 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.74 -7.88 -39.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832979050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.618 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds