Wall clock time and date at job start Tue Mar 31 2020 06:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38162 * 120.03031 * 2 1 4 4 C 1.38243 * 120.05464 * 180.29569 * 3 2 1 5 5 C 1.38289 * 120.11353 * 359.67376 * 4 3 2 6 6 C 1.38122 * 120.05389 * 0.02562 * 5 4 3 7 7 C 1.38716 * 120.02632 * 179.66957 * 2 1 3 8 8 O 1.35897 * 120.05418 * 0.02562 * 7 2 1 9 9 C 1.42903 * 116.99978 * 179.72193 * 8 7 2 10 10 C 1.52998 * 109.47194 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.47088 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.47077 * 180.02562 * 11 10 9 13 13 C 1.36936 * 119.99883 * 89.99952 * 12 11 10 14 14 H 1.07995 * 119.99833 * 9.28852 * 13 12 11 15 15 C 1.38812 * 119.99625 * 189.27636 * 13 12 11 16 16 N 1.31613 * 120.00223 * 24.75842 * 15 13 12 17 17 Si 1.86802 * 119.99827 * 204.75018 * 15 13 12 18 18 H 1.48505 * 109.46878 * 60.00359 * 17 15 13 19 19 H 1.48495 * 109.46989 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47047 * 300.00780 * 17 15 13 21 21 C 1.46500 * 119.99622 * 270.00497 * 12 11 10 22 22 C 1.50701 * 109.47463 * 89.20853 * 21 12 11 23 23 O 1.20825 * 119.99856 * 359.97438 * 22 21 12 24 24 O 1.34231 * 120.00039 * 179.97438 * 22 21 12 25 25 H 1.08996 * 109.47302 * 270.32873 * 1 2 3 26 26 H 1.09002 * 109.46401 * 30.32192 * 1 2 3 27 27 H 1.08995 * 109.46939 * 150.32166 * 1 2 3 28 28 H 1.08003 * 119.97564 * 359.97438 * 3 2 1 29 29 H 1.08006 * 119.94794 * 179.69789 * 4 3 2 30 30 H 1.08002 * 119.97452 * 180.02562 * 5 4 3 31 31 H 1.08001 * 120.02921 * 180.02562 * 6 5 4 32 32 H 1.08996 * 109.46948 * 60.00163 * 9 8 7 33 33 H 1.08997 * 109.47171 * 300.00095 * 9 8 7 34 34 H 1.08997 * 109.47078 * 300.00077 * 10 9 8 35 35 H 1.09004 * 109.47003 * 60.00520 * 10 9 8 36 36 H 1.08997 * 109.47334 * 300.00055 * 11 10 9 37 37 H 1.09004 * 109.46664 * 60.00446 * 11 10 9 38 38 H 0.97001 * 120.00534 * 179.97438 * 16 15 13 39 39 H 1.09010 * 109.46866 * 209.20666 * 21 12 11 40 40 H 1.08998 * 109.47716 * 329.20155 * 21 12 11 41 41 H 0.96694 * 116.99915 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1967 -0.0062 5 6 4.2752 0.0008 -0.0056 6 6 3.5887 -1.1977 0.0007 7 6 2.2012 -1.2010 0.0069 8 8 1.5233 -2.3788 0.0132 9 6 2.3033 -3.5762 0.0140 10 6 1.3730 -4.7909 0.0207 11 6 2.2082 -6.0729 0.0208 12 7 1.3174 -7.2360 0.0266 13 6 0.8970 -7.7823 -1.1566 14 1 1.3356 -7.4560 -2.0880 15 6 -0.0926 -8.7557 -1.1587 16 7 -0.9545 -8.8201 -0.1661 17 14 -0.2012 -9.9741 -2.5705 18 1 1.0634 -10.7481 -2.6547 19 1 -1.3359 -10.9030 -2.3365 20 1 -0.4176 -9.2395 -3.8427 21 6 0.8763 -7.8144 1.2983 22 6 -0.3925 -7.1354 1.7458 23 8 -0.8782 -6.2580 1.0720 24 8 -0.9830 -7.5054 2.8931 25 1 -0.3634 0.0059 1.0276 26 1 -0.3632 0.8871 -0.5189 27 1 -0.3633 -0.8928 -0.5088 28 1 1.6586 2.1315 -0.0004 29 1 4.1197 2.1328 -0.0111 30 1 5.3552 0.0039 -0.0100 31 1 4.1313 -2.1314 0.0016 32 1 2.9355 -3.5974 0.9016 33 1 2.9288 -3.6030 -0.8783 34 1 0.7473 -4.7643 0.9127 35 1 0.7412 -4.7695 -0.8673 36 1 2.8336 -6.0992 -0.8714 37 1 2.8403 -6.0945 0.9086 38 1 -1.6463 -9.5001 -0.1677 39 1 0.6911 -8.8807 1.1676 40 1 1.6509 -7.6698 2.0514 41 1 -1.7946 -7.0408 3.1388 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832979050.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:50 Heat of formation + Delta-G solvation = -104.978228 kcal Electronic energy + Delta-G solvation = -23428.575850 eV Core-core repulsion = 19887.723119 eV Total energy + Delta-G solvation = -3540.852731 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.15697 -40.53565 -38.58614 -37.69586 -36.21167 -34.46705 -33.65604 -32.30949 -30.77835 -29.18000 -27.75619 -27.15919 -24.74340 -23.10444 -22.59087 -22.00784 -21.52900 -19.03956 -18.74489 -18.40415 -17.33106 -17.16702 -16.90297 -16.73571 -16.46251 -15.98456 -15.48822 -15.31213 -15.24158 -14.75758 -14.31191 -13.99988 -13.96218 -13.83335 -13.31944 -13.20206 -13.15221 -12.91746 -12.81911 -12.49085 -12.39186 -12.23610 -12.20371 -12.00044 -11.89432 -11.78919 -11.59184 -11.33783 -10.99574 -10.52402 -9.75460 -9.08609 -9.04503 -7.98073 -5.25446 0.39249 0.52107 1.49115 1.50995 1.58084 2.07859 2.26985 2.50383 2.82242 2.83489 3.25180 3.55403 3.86850 3.92663 4.00528 4.13274 4.22791 4.41514 4.42885 4.45018 4.52321 4.60277 4.64705 4.75728 4.75969 4.81316 4.82911 4.98996 5.17995 5.21058 5.25652 5.30171 5.45294 5.52837 5.57062 5.61510 5.62809 5.94938 6.19063 6.20422 6.53752 7.01801 7.63134 7.82830 8.14207 9.11477 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.020811 B = 0.003493 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.112577 B = 8014.432808 C = 8464.265655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.145 4.145 3 C -0.087 4.087 4 C -0.159 4.159 5 C -0.089 4.089 6 C -0.217 4.217 7 C 0.101 3.899 8 O -0.338 6.338 9 C 0.071 3.929 10 C -0.120 4.120 11 C 0.148 3.852 12 N -0.581 5.581 13 C -0.261 4.261 14 H 0.082 0.918 15 C -0.050 4.050 16 N -0.929 5.929 17 Si 0.970 3.030 18 H -0.271 1.271 19 H -0.299 1.299 20 H -0.286 1.286 21 C 0.185 3.815 22 C 0.478 3.522 23 O -0.550 6.550 24 O -0.537 6.537 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.045 0.955 28 H 0.151 0.849 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.137 0.863 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.030 0.970 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.250 0.750 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.361 15.200 3.841 18.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.146 4.146 3 C -0.105 4.105 4 C -0.177 4.177 5 C -0.107 4.107 6 C -0.236 4.236 7 C 0.056 3.944 8 O -0.252 6.252 9 C -0.004 4.004 10 C -0.160 4.160 11 C 0.023 3.977 12 N -0.301 5.301 13 C -0.390 4.390 14 H 0.100 0.900 15 C -0.245 4.245 16 N -0.576 5.576 17 Si 0.799 3.201 18 H -0.197 1.197 19 H -0.225 1.225 20 H -0.212 1.212 21 C 0.056 3.944 22 C 0.319 3.681 23 O -0.439 6.439 24 O -0.348 6.348 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.064 0.936 28 H 0.169 0.831 29 H 0.169 0.831 30 H 0.168 0.832 31 H 0.155 0.845 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.059 0.941 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 10.287 15.054 3.534 18.572 hybrid contribution -1.468 -0.594 -0.648 1.711 sum 8.818 14.460 2.886 17.180 Atomic orbital electron populations 1.20580 0.90604 1.02532 1.02259 1.19636 0.97069 0.91120 1.06760 1.21195 0.94840 0.96699 0.97741 1.21420 0.94053 0.99127 1.03139 1.21303 1.01122 0.91378 0.96924 1.21518 0.92397 1.00937 1.08749 1.19337 0.91632 0.85862 0.97604 1.86106 1.37401 1.13198 1.88492 1.22877 0.94011 0.81498 1.02030 1.22111 0.98669 0.94036 1.01223 1.21064 0.91469 0.83478 1.01729 1.44454 1.52600 1.31333 1.01677 1.19573 1.16547 1.15827 0.87085 0.90039 1.25453 0.95682 1.02682 1.00667 1.69979 1.16696 1.35229 1.35725 0.85289 0.76956 0.79045 0.78808 1.19709 1.22538 1.21227 1.20490 0.88681 0.98379 0.86881 1.25490 0.87741 0.79087 0.75731 1.90500 1.65490 1.33617 1.54338 1.84561 1.43056 1.65251 1.41959 0.91454 0.89621 0.93599 0.83145 0.83071 0.83234 0.84475 0.90505 0.91068 0.93509 0.95154 0.91370 0.90401 0.94069 0.88768 0.89104 0.74454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.61 9.79 71.24 0.70 -1.91 16 2 C -0.15 -3.87 5.89 -19.77 -0.12 -3.98 16 3 C -0.09 -1.75 9.70 22.25 0.22 -1.54 16 4 C -0.16 -2.82 10.04 22.28 0.22 -2.59 16 5 C -0.09 -1.71 10.04 22.25 0.22 -1.49 16 6 C -0.22 -5.29 9.04 22.37 0.20 -5.08 16 7 C 0.10 3.01 6.66 22.51 0.15 3.16 16 8 O -0.34 -11.88 9.18 -92.39 -0.85 -12.73 16 9 C 0.07 2.22 4.74 71.98 0.34 2.56 16 10 C -0.12 -4.79 5.15 30.59 0.16 -4.63 16 11 C 0.15 5.57 5.71 86.38 0.49 6.07 16 12 N -0.58 -27.41 2.09 -706.32 -1.48 -28.89 16 13 C -0.26 -13.79 9.70 84.03 0.82 -12.98 16 14 H 0.08 4.21 7.93 -2.91 -0.02 4.18 16 15 C -0.05 -2.72 4.89 84.86 0.41 -2.30 16 16 N -0.93 -52.92 9.02 21.65 0.20 -52.72 16 17 Si 0.97 44.30 29.62 68.60 2.03 46.33 16 18 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 19 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 20 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 21 C 0.18 8.37 5.58 85.63 0.48 8.85 16 22 C 0.48 22.94 6.33 71.24 0.45 23.39 16 23 O -0.55 -30.40 14.42 21.97 0.32 -30.08 16 24 O -0.54 -21.73 13.42 -51.42 -0.69 -22.42 16 25 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.08 1.67 8.09 -2.39 -0.02 1.65 16 27 H 0.04 1.39 7.53 -2.39 -0.02 1.37 16 28 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 29 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 30 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 31 H 0.14 2.94 6.30 -2.91 -0.02 2.92 16 32 H 0.08 2.03 7.66 -2.39 -0.02 2.01 16 33 H 0.07 1.97 7.66 -2.39 -0.02 1.95 16 34 H 0.05 2.11 6.30 -2.39 -0.02 2.10 16 35 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 2.37 8.03 -2.39 -0.02 2.35 16 37 H 0.08 2.39 7.90 -2.39 -0.02 2.38 16 38 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 39 H 0.09 4.68 6.29 -2.38 -0.01 4.67 16 40 H 0.09 3.33 7.90 -2.39 -0.02 3.31 16 41 H 0.40 12.96 9.10 -74.06 -0.67 12.28 16 Total: -1.00 -70.94 341.80 4.64 -66.30 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.36 Total: 26.70 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 4.75 Total: 7.52 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -1.28 Total: -81.61 kcal Atomic # 8 Polarization: -64.01 SS G_CDS: -1.22 Total: -65.24 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -70.94 4.64 -66.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832979050.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.679 kcal (2) G-P(sol) polarization free energy of solvation -70.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds