Wall clock time and date at job start Tue Mar 31 2020 07:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47211 * 2 1 4 4 O 1.42906 * 109.46936 * 240.00608 * 2 1 3 5 5 C 1.52992 * 109.47139 * 120.00340 * 2 1 3 6 6 H 1.09005 * 109.46960 * 59.75872 * 5 2 1 7 7 O 1.42890 * 109.47224 * 299.75192 * 5 2 1 8 8 C 1.35901 * 116.99773 * 100.23585 * 7 5 2 9 9 C 1.38737 * 120.05630 * 174.40523 * 8 7 5 10 10 C 1.38140 * 119.94276 * 179.97438 * 9 8 7 11 11 C 1.38265 * 120.06130 * 359.97438 * 10 9 8 12 12 C 1.38268 * 120.10886 * 0.27332 * 11 10 9 13 13 C 1.38146 * 120.05328 * 359.45125 * 12 11 10 14 14 C 1.50702 * 109.46942 * 179.75295 * 5 2 1 15 15 O 1.21276 * 119.99984 * 111.90467 * 14 5 2 16 16 N 1.34779 * 120.00134 * 291.90488 * 14 5 2 17 17 C 1.46499 * 120.00144 * 185.06547 * 16 14 5 18 18 C 1.50696 * 109.47366 * 180.02562 * 17 16 14 19 19 H 1.07995 * 119.99837 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00271 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99973 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00236 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46904 * 60.00407 * 22 20 18 24 24 H 1.48499 * 109.47107 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47238 * 300.00612 * 22 20 18 26 26 H 1.08999 * 109.47230 * 303.06051 * 1 2 3 27 27 H 1.09000 * 109.47407 * 63.06471 * 1 2 3 28 28 H 1.08998 * 109.47398 * 183.06412 * 1 2 3 29 29 H 1.08997 * 109.47498 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47157 * 300.00717 * 3 2 1 31 31 H 1.09005 * 109.46566 * 59.99933 * 3 2 1 32 32 H 0.96695 * 113.99960 * 59.99868 * 4 2 1 33 33 H 1.08003 * 120.02523 * 359.94980 * 9 8 7 34 34 H 1.08007 * 119.96909 * 180.02562 * 10 9 8 35 35 H 1.07997 * 119.94889 * 180.02562 * 11 10 9 36 36 H 1.07995 * 119.97285 * 179.70407 * 12 11 10 37 37 H 1.07996 * 120.02856 * 180.27266 * 13 12 11 38 38 H 0.96997 * 119.99921 * 5.06828 * 16 14 5 39 39 H 1.09003 * 109.47362 * 300.00188 * 17 16 14 40 40 H 1.09007 * 109.46917 * 59.99851 * 17 16 14 41 41 H 0.96996 * 120.00245 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0400 -0.7213 1.2491 6 1 1.6731 -1.7477 1.2512 7 8 1.5684 -0.0444 2.4159 8 6 0.4907 -0.5804 3.0468 9 6 0.0511 -0.0439 4.2483 10 6 -1.0451 -0.5902 4.8874 11 6 -1.7043 -1.6704 4.3303 12 6 -1.2651 -2.2101 3.1355 13 6 -0.1729 -1.6639 2.4896 14 6 3.5470 -0.7266 1.2460 15 8 4.1573 -0.0796 2.0704 16 7 4.2165 -1.4503 0.3271 17 6 5.6770 -1.5450 0.3913 18 6 6.1750 -2.4049 -0.7416 19 1 5.4738 -2.8373 -1.4399 20 6 7.5260 -2.6389 -0.8872 21 7 8.3800 -2.1120 -0.0371 22 14 8.1432 -3.7054 -2.2911 23 1 7.7425 -3.0993 -3.5863 24 1 9.6238 -3.8002 -2.2267 25 1 7.5541 -5.0637 -2.1769 26 1 -0.3633 0.5606 0.8613 27 1 -0.3634 0.4655 -0.9162 28 1 -0.3634 -1.0262 0.0549 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.7209 -0.2700 -1.9980 33 1 0.5657 0.7999 4.6839 34 1 -1.3879 -0.1726 5.8226 35 1 -2.5613 -2.0958 4.8313 36 1 -1.7788 -3.0568 2.7048 37 1 0.1671 -2.0830 1.5542 38 1 3.7313 -1.9084 -0.3769 39 1 6.1098 -0.5481 0.3077 40 1 5.9707 -1.9901 1.3421 41 1 9.3304 -2.2762 -0.1398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834652608.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:21 Heat of formation + Delta-G solvation = -97.253115 kcal Electronic energy + Delta-G solvation = -24101.505783 eV Core-core repulsion = 20560.988038 eV Total energy + Delta-G solvation = -3540.517745 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.87999 -38.96894 -37.56290 -36.95913 -34.09762 -32.47137 -32.18626 -31.06996 -30.11551 -28.38809 -27.41090 -26.44164 -23.03671 -22.58813 -22.29094 -20.83534 -19.50668 -18.41361 -17.56809 -16.53207 -16.40957 -16.04356 -15.79539 -15.40561 -14.96124 -14.40753 -14.38825 -14.08654 -13.87734 -13.78185 -13.53182 -13.21233 -12.86606 -12.41967 -12.34677 -12.04163 -11.90431 -11.82261 -11.76151 -11.66901 -11.48730 -11.00901 -10.94092 -10.85088 -10.54598 -10.28000 -10.11888 -9.37150 -9.11928 -9.00468 -8.68851 -8.23985 -7.81153 -6.12849 -4.19242 1.21083 1.33014 2.78780 3.24659 3.27968 3.32436 3.34350 3.66154 4.05208 4.28749 4.40439 4.54477 4.63263 4.72551 4.81406 4.86728 5.01317 5.17143 5.23114 5.24936 5.36269 5.44699 5.50963 5.56793 5.63169 5.76079 5.87176 5.89404 5.97103 6.21894 6.27851 6.32092 6.40142 6.64208 7.27825 7.36289 7.50643 7.54851 7.55041 7.73666 8.00739 8.68782 8.81038 9.14036 9.46829 10.97458 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022088 B = 0.003799 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.338784 B = 7367.769285 C = 7637.096997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.120 3.880 3 C -0.176 4.176 4 O -0.550 6.550 5 C 0.075 3.925 6 H 0.103 0.897 7 O -0.271 6.271 8 C 0.132 3.868 9 C -0.150 4.150 10 C -0.082 4.082 11 C -0.164 4.164 12 C -0.080 4.080 13 C -0.214 4.214 14 C 0.505 3.495 15 O -0.540 6.540 16 N -0.694 5.694 17 C 0.251 3.749 18 C -0.540 4.540 19 H 0.064 0.936 20 C 0.063 3.937 21 N -0.887 5.887 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.385 0.615 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.133 0.867 38 H 0.399 0.601 39 H 0.027 0.973 40 H 0.026 0.974 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.949 2.782 2.218 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.079 3.921 3 C -0.233 4.233 4 O -0.358 6.358 5 C 0.014 3.986 6 H 0.120 0.880 7 O -0.183 6.183 8 C 0.087 3.913 9 C -0.169 4.169 10 C -0.100 4.100 11 C -0.182 4.182 12 C -0.098 4.098 13 C -0.232 4.232 14 C 0.287 3.713 15 O -0.418 6.418 16 N -0.344 5.344 17 C 0.131 3.869 18 C -0.578 4.578 19 H 0.082 0.918 20 C -0.140 4.140 21 N -0.524 5.524 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.234 0.766 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.151 0.849 38 H 0.234 0.766 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.874 3.031 3.350 21.358 hybrid contribution -0.144 -0.586 -1.607 1.717 sum -21.019 2.445 1.743 21.232 Atomic orbital electron populations 1.22637 0.94935 1.03027 1.03137 1.21286 0.92887 0.92480 0.85494 1.22429 1.03266 0.95049 1.02580 1.86431 1.77249 1.56689 1.15394 1.22185 0.94920 0.97541 0.83931 0.87971 1.86240 1.42973 1.50007 1.39079 1.19193 0.87128 0.92694 0.92317 1.20478 0.99219 1.03131 0.94086 1.20956 0.94283 0.95599 0.99130 1.21042 1.01632 0.98398 0.97112 1.20928 0.95386 0.98637 0.94816 1.21421 0.99658 0.99325 1.02814 1.19786 0.87392 0.81190 0.82939 1.90688 1.69156 1.42582 1.39379 1.46347 1.10408 1.49076 1.28590 1.19130 0.72797 0.97497 0.97509 1.21183 0.92503 1.31789 1.12356 0.91825 1.24949 0.96533 0.95972 0.96574 1.69968 1.02730 1.43682 1.36057 0.86468 0.77659 0.80647 0.82081 1.20067 1.21123 1.20071 0.91099 0.91646 0.91448 0.90933 0.92148 0.90818 0.76584 0.85020 0.85459 0.86082 0.85858 0.84918 0.76575 0.95461 0.95613 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 7.41 37.16 0.28 -1.53 16 2 C 0.12 1.55 0.92 -90.62 -0.08 1.47 16 3 C -0.18 -2.40 8.42 37.16 0.31 -2.09 16 4 O -0.55 -6.90 10.89 -35.23 -0.38 -7.28 16 5 C 0.07 1.21 2.02 -27.89 -0.06 1.15 16 6 H 0.10 1.50 5.38 -51.93 -0.28 1.22 16 7 O -0.27 -4.44 8.33 -39.21 -0.33 -4.77 16 8 C 0.13 1.83 5.62 -39.21 -0.22 1.61 16 9 C -0.15 -1.85 9.99 -39.43 -0.39 -2.24 16 10 C -0.08 -0.81 10.04 -39.61 -0.40 -1.21 16 11 C -0.16 -1.54 10.04 -39.56 -0.40 -1.94 16 12 C -0.08 -0.80 10.04 -39.60 -0.40 -1.19 16 13 C -0.21 -2.53 7.44 -39.43 -0.29 -2.83 16 14 C 0.50 10.82 5.84 -10.98 -0.06 10.76 16 15 O -0.54 -13.84 16.53 -14.22 -0.24 -14.07 16 16 N -0.69 -15.45 5.24 -61.47 -0.32 -15.77 16 17 C 0.25 6.85 5.43 -5.20 -0.03 6.82 16 18 C -0.54 -14.93 9.28 -34.44 -0.32 -15.25 16 19 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 22 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H 0.07 0.76 6.95 -51.93 -0.36 0.40 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.64 6.34 -51.93 -0.33 0.31 16 29 H 0.07 1.24 7.23 -51.93 -0.38 0.86 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.02 7.68 -51.93 -0.40 0.62 16 32 H 0.39 3.19 9.04 45.56 0.41 3.60 16 33 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 34 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.13 1.48 4.43 -52.49 -0.23 1.24 16 38 H 0.40 8.00 6.74 -40.82 -0.27 7.72 16 39 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 337.57 15.07 5.09 5.09 Total: -1.00 -33.84 337.57 -7.38 -41.21 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -4.75 Total: 10.02 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -2.16 Total: -4.78 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.41 Total: -41.47 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.95 Total: -26.12 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.84 -7.38 -41.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652608.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.038 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds