Wall clock time and date at job start Tue Mar 31 2020 07:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47211 * 2 1 4 4 O 1.42906 * 109.46936 * 240.00608 * 2 1 3 5 5 C 1.52992 * 109.47139 * 120.00340 * 2 1 3 6 6 H 1.09005 * 109.46960 * 59.75872 * 5 2 1 7 7 O 1.42890 * 109.47224 * 299.75192 * 5 2 1 8 8 C 1.35901 * 116.99773 * 100.23585 * 7 5 2 9 9 C 1.38737 * 120.05630 * 174.40523 * 8 7 5 10 10 C 1.38140 * 119.94276 * 179.97438 * 9 8 7 11 11 C 1.38265 * 120.06130 * 359.97438 * 10 9 8 12 12 C 1.38268 * 120.10886 * 0.27332 * 11 10 9 13 13 C 1.38146 * 120.05328 * 359.45125 * 12 11 10 14 14 C 1.50702 * 109.46942 * 179.75295 * 5 2 1 15 15 O 1.21276 * 119.99984 * 111.90467 * 14 5 2 16 16 N 1.34779 * 120.00134 * 291.90488 * 14 5 2 17 17 C 1.46499 * 120.00144 * 185.06547 * 16 14 5 18 18 C 1.50696 * 109.47366 * 180.02562 * 17 16 14 19 19 H 1.07995 * 119.99837 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00271 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99973 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00236 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46904 * 60.00407 * 22 20 18 24 24 H 1.48499 * 109.47107 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47238 * 300.00612 * 22 20 18 26 26 H 1.08999 * 109.47230 * 303.06051 * 1 2 3 27 27 H 1.09000 * 109.47407 * 63.06471 * 1 2 3 28 28 H 1.08998 * 109.47398 * 183.06412 * 1 2 3 29 29 H 1.08997 * 109.47498 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47157 * 300.00717 * 3 2 1 31 31 H 1.09005 * 109.46566 * 59.99933 * 3 2 1 32 32 H 0.96695 * 113.99960 * 59.99868 * 4 2 1 33 33 H 1.08003 * 120.02523 * 359.94980 * 9 8 7 34 34 H 1.08007 * 119.96909 * 180.02562 * 10 9 8 35 35 H 1.07997 * 119.94889 * 180.02562 * 11 10 9 36 36 H 1.07995 * 119.97285 * 179.70407 * 12 11 10 37 37 H 1.07996 * 120.02856 * 180.27266 * 13 12 11 38 38 H 0.96997 * 119.99921 * 5.06828 * 16 14 5 39 39 H 1.09003 * 109.47362 * 300.00188 * 17 16 14 40 40 H 1.09007 * 109.46917 * 59.99851 * 17 16 14 41 41 H 0.96996 * 120.00245 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0400 -0.7213 1.2491 6 1 1.6731 -1.7477 1.2512 7 8 1.5684 -0.0444 2.4159 8 6 0.4907 -0.5804 3.0468 9 6 0.0511 -0.0439 4.2483 10 6 -1.0451 -0.5902 4.8874 11 6 -1.7043 -1.6704 4.3303 12 6 -1.2651 -2.2101 3.1355 13 6 -0.1729 -1.6639 2.4896 14 6 3.5470 -0.7266 1.2460 15 8 4.1573 -0.0796 2.0704 16 7 4.2165 -1.4503 0.3271 17 6 5.6770 -1.5450 0.3913 18 6 6.1750 -2.4049 -0.7416 19 1 5.4738 -2.8373 -1.4399 20 6 7.5260 -2.6389 -0.8872 21 7 8.3800 -2.1120 -0.0371 22 14 8.1432 -3.7054 -2.2911 23 1 7.7425 -3.0993 -3.5863 24 1 9.6238 -3.8002 -2.2267 25 1 7.5541 -5.0637 -2.1769 26 1 -0.3633 0.5606 0.8613 27 1 -0.3634 0.4655 -0.9162 28 1 -0.3634 -1.0262 0.0549 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.7209 -0.2700 -1.9980 33 1 0.5657 0.7999 4.6839 34 1 -1.3879 -0.1726 5.8226 35 1 -2.5613 -2.0958 4.8313 36 1 -1.7788 -3.0568 2.7048 37 1 0.1671 -2.0830 1.5542 38 1 3.7313 -1.9084 -0.3769 39 1 6.1098 -0.5481 0.3077 40 1 5.9707 -1.9901 1.3421 41 1 9.3304 -2.2762 -0.1398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834652608.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:21 Heat of formation + Delta-G solvation = -122.141627 kcal Electronic energy + Delta-G solvation = -24102.585030 eV Core-core repulsion = 20560.988038 eV Total energy + Delta-G solvation = -3541.596992 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.05978 -40.28329 -38.88756 -37.97564 -36.14425 -34.36470 -33.40513 -31.90671 -31.06161 -30.03451 -28.40297 -28.11613 -24.77860 -23.65816 -23.28913 -22.24218 -21.02499 -19.46276 -19.20262 -17.95525 -17.61027 -17.28253 -17.11339 -16.74234 -16.53777 -16.04664 -15.71442 -15.32897 -15.02693 -14.84154 -14.56264 -14.43361 -14.26704 -14.04492 -13.77693 -13.46737 -13.19460 -12.97956 -12.94730 -12.74264 -12.69035 -12.67385 -12.40461 -12.23726 -11.92275 -11.59011 -11.52978 -11.17220 -10.79841 -10.68357 -9.93809 -9.86505 -9.18993 -8.29277 -6.46388 0.39180 0.46583 1.42460 1.47635 1.53690 1.55500 1.60975 2.36243 2.64283 2.84282 3.05082 3.19452 3.45317 3.50666 3.77744 3.90736 3.94182 4.05820 4.11518 4.30637 4.47523 4.54344 4.60941 4.67117 4.71472 4.78619 4.92991 5.04635 5.09170 5.12243 5.19079 5.22520 5.36397 5.45965 5.48509 5.60657 5.65948 5.82000 5.84773 6.33994 6.62911 6.79239 6.84661 7.21709 7.41283 8.82990 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022088 B = 0.003799 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.338784 B = 7367.769285 C = 7637.096997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.128 3.872 3 C -0.173 4.173 4 O -0.563 6.563 5 C 0.086 3.914 6 H 0.120 0.880 7 O -0.297 6.297 8 C 0.099 3.901 9 C -0.170 4.170 10 C -0.080 4.080 11 C -0.157 4.157 12 C -0.080 4.080 13 C -0.218 4.218 14 C 0.499 3.501 15 O -0.591 6.591 16 N -0.687 5.687 17 C 0.268 3.732 18 C -0.554 4.554 19 H 0.083 0.917 20 C 0.004 3.996 21 N -0.932 5.932 22 Si 0.988 3.012 23 H -0.261 1.261 24 H -0.285 1.285 25 H -0.261 1.261 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.027 0.973 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.405 0.595 33 H 0.125 0.875 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.138 0.862 38 H 0.413 0.587 39 H -0.014 1.014 40 H -0.013 1.013 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.190 1.049 0.594 25.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.087 3.913 3 C -0.231 4.231 4 O -0.374 6.374 5 C 0.025 3.975 6 H 0.137 0.863 7 O -0.209 6.209 8 C 0.055 3.945 9 C -0.189 4.189 10 C -0.098 4.098 11 C -0.175 4.175 12 C -0.098 4.098 13 C -0.237 4.237 14 C 0.284 3.716 15 O -0.473 6.473 16 N -0.338 5.338 17 C 0.145 3.855 18 C -0.592 4.592 19 H 0.102 0.898 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.810 3.190 23 H -0.185 1.185 24 H -0.210 1.210 25 H -0.185 1.185 26 H 0.082 0.918 27 H 0.112 0.888 28 H 0.096 0.904 29 H 0.047 0.953 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.258 0.742 33 H 0.143 0.857 34 H 0.172 0.828 35 H 0.171 0.829 36 H 0.170 0.830 37 H 0.156 0.844 38 H 0.251 0.749 39 H 0.004 0.996 40 H 0.005 0.995 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.184 1.296 1.702 24.278 hybrid contribution 0.798 -0.006 -0.969 1.255 sum -23.386 1.290 0.733 23.433 Atomic orbital electron populations 1.22526 0.91705 1.03977 1.04255 1.21178 0.94913 0.90985 0.84245 1.22415 1.00317 0.96423 1.03919 1.86373 1.77815 1.56987 1.16252 1.22023 0.90199 0.99297 0.85937 0.86298 1.86193 1.44607 1.50649 1.39500 1.19493 0.87329 0.94415 0.93264 1.20686 1.00429 1.03601 0.94156 1.21304 0.93159 0.95547 0.99805 1.21480 1.01888 0.97464 0.96683 1.21318 0.94583 0.99053 0.94847 1.21533 1.00186 0.98764 1.03189 1.20843 0.90162 0.79307 0.81255 1.90646 1.71079 1.44401 1.41146 1.46070 1.08508 1.49628 1.29595 1.18590 0.75782 0.95006 0.96102 1.21533 0.93368 1.31820 1.12483 0.89850 1.26097 0.96638 0.97253 0.99571 1.70140 1.03242 1.45268 1.38392 0.85171 0.76813 0.78790 0.78222 1.18528 1.21009 1.18538 0.91801 0.88843 0.90375 0.95331 0.88732 0.91569 0.74197 0.85730 0.82822 0.82940 0.83018 0.84438 0.74942 0.99569 0.99491 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 7.41 71.98 0.53 -2.37 16 2 C 0.13 3.21 0.92 -10.80 -0.01 3.20 16 3 C -0.17 -4.78 8.42 71.98 0.61 -4.17 16 4 O -0.56 -13.19 10.89 -148.98 -1.62 -14.81 16 5 C 0.09 2.81 2.02 29.85 0.06 2.87 16 6 H 0.12 3.43 5.38 -2.38 -0.01 3.42 16 7 O -0.30 -10.08 8.33 -73.53 -0.61 -10.70 16 8 C 0.10 2.74 5.62 22.51 0.13 2.86 16 9 C -0.17 -4.15 9.99 22.37 0.22 -3.93 16 10 C -0.08 -1.42 10.04 22.25 0.22 -1.20 16 11 C -0.16 -2.40 10.04 22.28 0.22 -2.18 16 12 C -0.08 -1.34 10.04 22.26 0.22 -1.12 16 13 C -0.22 -4.79 7.44 22.37 0.17 -4.63 16 14 C 0.50 22.63 5.84 87.66 0.51 23.14 16 15 O -0.59 -32.76 16.53 15.90 0.26 -32.50 16 16 N -0.69 -31.96 5.24 -466.78 -2.45 -34.40 16 17 C 0.27 15.53 5.43 85.63 0.47 15.99 16 18 C -0.55 -31.23 9.28 25.60 0.24 -30.99 16 19 H 0.08 4.27 7.60 -2.91 -0.02 4.24 16 20 C 0.00 0.22 5.46 84.65 0.46 0.68 16 21 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 22 Si 0.99 42.98 29.54 68.60 2.03 45.01 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 26 H 0.06 1.24 6.95 -2.39 -0.02 1.22 16 27 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.21 6.34 -2.39 -0.02 1.20 16 29 H 0.03 1.02 7.23 -2.39 -0.02 1.00 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 1.90 7.68 -2.38 -0.02 1.88 16 32 H 0.41 5.61 9.04 -74.06 -0.67 4.94 16 33 H 0.12 3.06 8.06 -2.91 -0.02 3.04 16 34 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 35 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.14 2.77 4.43 -2.91 -0.01 2.76 16 38 H 0.41 16.70 6.74 -92.71 -0.62 16.08 16 39 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 40 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 41 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -79.19 337.57 1.72 -77.47 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: -0.23 Total: 28.93 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 4.05 Total: -1.84 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -2.16 Total: -91.57 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -1.97 Total: -58.01 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -79.19 1.72 -77.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834652608.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.668 kcal (2) G-P(sol) polarization free energy of solvation -79.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds