Wall clock time and date at job start Tue Mar 31 2020 07:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47098 * 2 1 4 4 C 1.52997 * 109.46864 * 119.99695 * 2 1 3 5 5 H 1.08999 * 109.47328 * 300.00041 * 4 2 1 6 6 C 1.53000 * 109.47034 * 179.97438 * 4 2 1 7 7 O 1.42899 * 109.47426 * 305.00354 * 6 4 2 8 8 O 1.42903 * 109.47168 * 60.00330 * 4 2 1 9 9 N 1.41604 * 114.00231 * 204.99798 * 8 4 2 10 10 C 1.34766 * 120.00214 * 179.97438 * 9 8 4 11 11 O 1.21593 * 120.00291 * 0.02562 * 10 9 8 12 12 C 1.47642 * 120.00042 * 180.02562 * 10 9 8 13 13 C 1.40010 * 119.89608 * 359.72859 * 12 10 9 14 14 C 1.36319 * 120.10783 * 179.71644 * 13 12 10 15 15 C 1.40884 * 119.89119 * 0.58133 * 14 13 12 16 16 C 1.41112 * 120.10388 * 179.67470 * 15 14 13 17 17 H 1.07998 * 119.99723 * 204.64769 * 16 15 14 18 18 C 1.40221 * 120.00061 * 24.64828 * 16 15 14 19 19 N 1.30648 * 119.99936 * 17.86884 * 18 16 15 20 20 Si 1.86796 * 120.00015 * 197.86136 * 18 16 15 21 21 H 1.48505 * 109.46981 * 60.00384 * 20 18 16 22 22 H 1.48500 * 109.47224 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47486 * 300.00357 * 20 18 16 24 24 C 1.40896 * 119.79477 * 359.69305 * 15 14 13 25 25 C 1.36315 * 119.88782 * 0.02562 * 24 15 14 26 26 H 1.08999 * 109.46570 * 60.00279 * 1 2 3 27 27 H 1.08999 * 109.47182 * 300.00174 * 1 2 3 28 28 H 1.08996 * 109.46869 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47182 * 239.99826 * 2 1 3 30 30 H 1.08999 * 109.47246 * 59.99866 * 3 2 1 31 31 H 1.08997 * 109.47063 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47418 * 299.99844 * 3 2 1 33 33 H 1.09006 * 109.47201 * 65.00458 * 6 4 2 34 34 H 1.09000 * 109.47327 * 184.99726 * 6 4 2 35 35 H 0.96706 * 113.99976 * 179.97438 * 7 6 4 36 36 H 0.97003 * 119.99438 * 359.97438 * 9 8 4 37 37 H 1.08001 * 119.94801 * 359.97438 * 13 12 10 38 38 H 1.08000 * 120.05705 * 180.25077 * 14 13 12 39 39 H 0.97001 * 120.00010 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.05411 * 179.97438 * 24 15 14 41 41 H 1.07999 * 119.94551 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -0.2073 2.1392 6 6 3.5700 -0.7218 1.2490 7 8 4.0460 -1.2915 0.0280 8 8 1.5637 -2.0685 1.2493 9 7 1.4780 -2.6491 2.5380 10 6 1.0423 -3.9167 2.6784 11 8 0.7233 -4.5620 1.6985 12 6 0.9524 -4.5218 4.0221 13 6 1.3257 -3.7787 5.1485 14 6 1.2390 -4.3312 6.3917 15 6 0.7844 -5.6563 6.5409 16 6 0.6993 -6.2350 7.8251 17 1 0.7458 -7.3081 7.9380 18 6 0.5545 -5.4168 8.9546 19 7 0.1525 -4.1811 8.8189 20 14 0.9362 -6.0936 10.6533 21 1 2.3550 -6.5290 10.7054 22 1 0.7058 -5.0366 11.6706 23 1 0.0520 -7.2530 10.9345 24 6 0.4153 -6.4021 5.4040 25 6 0.5000 -5.8391 4.1654 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 3.9338 0.3019 1.3384 34 1 3.9333 -1.3111 2.0909 35 1 5.0100 -1.3237 -0.0415 36 1 1.7328 -2.1344 3.3197 37 1 1.6790 -2.7647 5.0326 38 1 1.5233 -3.7559 7.2603 39 1 0.0526 -3.6150 9.6003 40 1 0.0667 -7.4184 5.5135 41 1 0.2170 -6.4098 3.2933 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836892063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:32 Heat of formation + Delta-G solvation = -78.023743 kcal Electronic energy + Delta-G solvation = -23083.465891 eV Core-core repulsion = 19543.781994 eV Total energy + Delta-G solvation = -3539.683897 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.24194 -38.42131 -37.03993 -35.98469 -34.85502 -33.92571 -31.74698 -29.84375 -29.49281 -28.71150 -27.07082 -25.81225 -23.31146 -22.11261 -21.01835 -20.49326 -19.50820 -18.20500 -17.57544 -17.25630 -16.35812 -15.85155 -15.50285 -15.21914 -14.66585 -14.19803 -14.05592 -13.69988 -13.61795 -13.25368 -13.02784 -12.84500 -12.68470 -12.31911 -12.28314 -12.13779 -11.99556 -11.54781 -11.41559 -11.30873 -11.18734 -11.03267 -10.78168 -10.69347 -10.40079 -10.13156 -10.11102 -9.61864 -9.40336 -9.02757 -8.37589 -7.79039 -7.60772 -7.09094 -4.66036 2.18506 2.39089 2.89505 2.91307 2.95368 2.97816 3.69900 3.85503 4.08184 4.50877 4.52556 4.58740 4.67075 4.92544 5.11969 5.19211 5.24387 5.45221 5.49763 5.51038 5.64243 5.70788 5.79315 5.82741 5.94477 5.95510 6.23640 6.26938 6.29902 6.71611 6.77159 6.94678 7.05862 7.33798 7.36861 7.49601 7.56175 7.69626 7.79641 8.00770 8.10890 8.33329 8.57273 8.68720 9.11234 9.82820 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024785 B = 0.003103 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.422407 B = 9020.660227 C = 9414.347576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 C -0.144 4.144 4 C 0.067 3.933 5 H 0.084 0.916 6 C 0.051 3.949 7 O -0.557 6.557 8 O -0.131 6.131 9 N -0.610 5.610 10 C 0.584 3.416 11 O -0.555 6.555 12 C -0.275 4.275 13 C -0.065 4.065 14 C -0.176 4.176 15 C 0.129 3.871 16 C -0.440 4.440 17 H 0.086 0.914 18 C 0.074 3.926 19 N -0.770 5.770 20 Si 0.915 3.085 21 H -0.260 1.260 22 H -0.276 1.276 23 H -0.262 1.262 24 C -0.237 4.237 25 C -0.018 4.018 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.375 0.625 36 H 0.400 0.600 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.288 0.712 40 H 0.101 0.899 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.653 11.226 -6.225 14.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 C -0.201 4.201 4 C 0.008 3.992 5 H 0.102 0.898 6 C -0.027 4.027 7 O -0.362 6.362 8 O -0.134 6.134 9 N -0.314 5.314 10 C 0.379 3.621 11 O -0.434 6.434 12 C -0.280 4.280 13 C -0.084 4.084 14 C -0.196 4.196 15 C 0.126 3.874 16 C -0.468 4.468 17 H 0.104 0.896 18 C -0.147 4.147 19 N -0.393 5.393 20 Si 0.738 3.262 21 H -0.184 1.184 22 H -0.200 1.200 23 H -0.186 1.186 24 C -0.256 4.256 25 C -0.037 4.037 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.222 0.778 36 H 0.241 0.759 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.645 10.833 -7.090 13.755 hybrid contribution 0.990 0.530 1.436 1.823 sum 5.634 11.363 -5.654 13.886 Atomic orbital electron populations 1.21837 0.94427 1.02988 1.01417 1.21017 0.96356 0.95303 0.97549 1.21852 1.01164 0.94968 1.02130 1.22717 0.91931 0.84512 1.00060 0.89836 1.22810 0.95319 0.97120 0.87471 1.86569 1.26250 1.85050 1.38315 1.90648 1.87665 1.26155 1.08931 1.47821 1.72092 1.13855 0.97650 1.18676 0.75326 0.77986 0.90078 1.90666 1.50952 1.61229 1.40587 1.18629 1.23057 0.97292 0.89025 1.20449 0.98354 0.96531 0.93081 1.20965 1.05682 0.97334 0.95569 1.17789 0.85535 0.91576 0.92533 1.19846 1.41150 0.95231 0.90547 0.89615 1.26111 0.91867 0.94421 1.02331 1.69733 1.28704 1.07324 1.33569 0.86243 0.80525 0.79742 0.79681 1.18447 1.20034 1.18602 1.20718 1.11835 1.00680 0.92399 1.20338 0.94018 0.92673 0.96651 0.92552 0.92888 0.91468 0.89200 0.92632 0.92333 0.91950 0.92623 0.93226 0.77834 0.75896 0.89539 0.86084 0.90110 0.88127 0.87816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.05 37.16 0.34 -1.39 16 2 C -0.08 -0.94 2.52 -90.62 -0.23 -1.17 16 3 C -0.14 -1.20 8.84 37.16 0.33 -0.87 16 4 C 0.07 0.85 2.22 -26.73 -0.06 0.79 16 5 H 0.08 0.92 7.94 -51.93 -0.41 0.50 16 6 C 0.05 0.56 6.41 37.16 0.24 0.80 16 7 O -0.56 -6.68 12.74 -40.13 -0.51 -7.19 16 8 O -0.13 -2.35 10.04 -34.82 -0.35 -2.70 16 9 N -0.61 -11.27 6.32 30.48 0.19 -11.08 16 10 C 0.58 13.22 7.91 -12.43 -0.10 13.12 16 11 O -0.56 -14.46 16.73 -12.86 -0.22 -14.68 16 12 C -0.28 -6.30 5.89 -104.73 -0.62 -6.91 16 13 C -0.06 -1.40 9.47 -39.61 -0.38 -1.78 16 14 C -0.18 -4.20 8.64 -39.27 -0.34 -4.54 16 15 C 0.13 3.21 5.58 -106.80 -0.60 2.61 16 16 C -0.44 -10.69 9.04 -37.75 -0.34 -11.03 16 17 H 0.09 1.98 7.91 -52.49 -0.42 1.57 16 18 C 0.07 1.69 5.14 -17.31 -0.09 1.60 16 19 N -0.77 -17.95 10.95 55.56 0.61 -17.34 16 20 Si 0.91 16.83 29.60 -169.99 -5.03 11.79 16 21 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 22 H -0.28 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 24 C -0.24 -5.64 9.73 -39.27 -0.38 -6.02 16 25 C -0.02 -0.41 9.52 -39.61 -0.38 -0.79 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.95 7.68 -51.93 -0.40 0.55 16 29 H 0.09 1.18 7.56 -51.93 -0.39 0.78 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.46 6.55 -51.93 -0.34 0.12 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.45 6.71 -51.93 -0.35 0.10 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.38 2.72 9.12 45.56 0.42 3.14 16 36 H 0.40 6.16 6.43 -40.82 -0.26 5.90 16 37 H 0.09 1.55 6.37 -52.49 -0.33 1.22 16 38 H 0.12 2.90 6.16 -52.49 -0.32 2.58 16 39 H 0.29 6.03 8.29 -40.82 -0.34 5.69 16 40 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 41 H 0.10 2.37 7.63 -52.49 -0.40 1.97 16 LS Contribution 344.78 15.07 5.20 5.20 Total: -1.00 -30.91 344.78 -7.59 -38.50 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -4.88 Total: 13.08 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -2.60 Total: -15.58 kcal Atomic # 7 Polarization: -29.22 SS G_CDS: 0.80 Total: -28.42 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -1.08 Total: -24.57 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.03 Total: 11.79 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.91 -7.59 -38.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836892063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.525 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds