Wall clock time and date at job start Tue Mar 31 2020 07:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47098 * 2 1 4 4 C 1.52997 * 109.46864 * 119.99695 * 2 1 3 5 5 H 1.08999 * 109.47328 * 300.00041 * 4 2 1 6 6 C 1.53000 * 109.47034 * 179.97438 * 4 2 1 7 7 O 1.42899 * 109.47426 * 305.00354 * 6 4 2 8 8 O 1.42903 * 109.47168 * 60.00330 * 4 2 1 9 9 N 1.41604 * 114.00231 * 204.99798 * 8 4 2 10 10 C 1.34766 * 120.00214 * 179.97438 * 9 8 4 11 11 O 1.21593 * 120.00291 * 0.02562 * 10 9 8 12 12 C 1.47642 * 120.00042 * 180.02562 * 10 9 8 13 13 C 1.40010 * 119.89608 * 359.72859 * 12 10 9 14 14 C 1.36319 * 120.10783 * 179.71644 * 13 12 10 15 15 C 1.40884 * 119.89119 * 0.58133 * 14 13 12 16 16 C 1.41112 * 120.10388 * 179.67470 * 15 14 13 17 17 H 1.07998 * 119.99723 * 204.64769 * 16 15 14 18 18 C 1.40221 * 120.00061 * 24.64828 * 16 15 14 19 19 N 1.30648 * 119.99936 * 17.86884 * 18 16 15 20 20 Si 1.86796 * 120.00015 * 197.86136 * 18 16 15 21 21 H 1.48505 * 109.46981 * 60.00384 * 20 18 16 22 22 H 1.48500 * 109.47224 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47486 * 300.00357 * 20 18 16 24 24 C 1.40896 * 119.79477 * 359.69305 * 15 14 13 25 25 C 1.36315 * 119.88782 * 0.02562 * 24 15 14 26 26 H 1.08999 * 109.46570 * 60.00279 * 1 2 3 27 27 H 1.08999 * 109.47182 * 300.00174 * 1 2 3 28 28 H 1.08996 * 109.46869 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47182 * 239.99826 * 2 1 3 30 30 H 1.08999 * 109.47246 * 59.99866 * 3 2 1 31 31 H 1.08997 * 109.47063 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47418 * 299.99844 * 3 2 1 33 33 H 1.09006 * 109.47201 * 65.00458 * 6 4 2 34 34 H 1.09000 * 109.47327 * 184.99726 * 6 4 2 35 35 H 0.96706 * 113.99976 * 179.97438 * 7 6 4 36 36 H 0.97003 * 119.99438 * 359.97438 * 9 8 4 37 37 H 1.08001 * 119.94801 * 359.97438 * 13 12 10 38 38 H 1.08000 * 120.05705 * 180.25077 * 14 13 12 39 39 H 0.97001 * 120.00010 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.05411 * 179.97438 * 24 15 14 41 41 H 1.07999 * 119.94551 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -0.2073 2.1392 6 6 3.5700 -0.7218 1.2490 7 8 4.0460 -1.2915 0.0280 8 8 1.5637 -2.0685 1.2493 9 7 1.4780 -2.6491 2.5380 10 6 1.0423 -3.9167 2.6784 11 8 0.7233 -4.5620 1.6985 12 6 0.9524 -4.5218 4.0221 13 6 1.3257 -3.7787 5.1485 14 6 1.2390 -4.3312 6.3917 15 6 0.7844 -5.6563 6.5409 16 6 0.6993 -6.2350 7.8251 17 1 0.7458 -7.3081 7.9380 18 6 0.5545 -5.4168 8.9546 19 7 0.1525 -4.1811 8.8189 20 14 0.9362 -6.0936 10.6533 21 1 2.3550 -6.5290 10.7054 22 1 0.7058 -5.0366 11.6706 23 1 0.0520 -7.2530 10.9345 24 6 0.4153 -6.4021 5.4040 25 6 0.5000 -5.8391 4.1654 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 3.9338 0.3019 1.3384 34 1 3.9333 -1.3111 2.0909 35 1 5.0100 -1.3237 -0.0415 36 1 1.7328 -2.1344 3.3197 37 1 1.6790 -2.7647 5.0326 38 1 1.5233 -3.7559 7.2603 39 1 0.0526 -3.6150 9.6003 40 1 0.0667 -7.4184 5.5135 41 1 0.2170 -6.4098 3.2933 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836892063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:31 Heat of formation + Delta-G solvation = -97.835595 kcal Electronic energy + Delta-G solvation = -23084.324997 eV Core-core repulsion = 19543.781994 eV Total energy + Delta-G solvation = -3540.543003 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.77020 -39.74297 -38.74840 -37.12370 -35.91566 -35.69504 -33.35633 -31.51928 -31.28771 -29.72204 -27.94430 -27.49885 -24.35358 -23.76144 -22.80830 -21.81969 -20.87336 -19.51987 -19.32897 -18.33381 -17.90181 -17.25883 -16.85774 -16.34766 -15.91903 -15.77029 -15.70805 -15.12561 -15.02844 -14.54439 -14.47913 -14.12022 -13.87342 -13.72151 -13.60664 -13.23165 -13.20344 -13.00057 -12.86281 -12.70356 -12.56850 -12.36473 -12.07909 -11.80274 -11.67682 -11.42015 -11.38453 -11.12675 -10.97160 -10.81925 -9.91205 -9.59850 -9.42923 -8.80634 -6.49725 0.40044 0.98759 1.13936 1.40537 1.45556 1.53661 2.09550 2.18026 2.76141 3.25748 3.51275 3.61657 3.67010 3.79201 4.06793 4.10860 4.26372 4.30113 4.38048 4.42599 4.45936 4.52958 4.76402 4.76949 4.91456 4.94692 4.98565 5.01666 5.12671 5.19096 5.26603 5.36384 5.39692 5.56443 5.75166 5.88756 5.93093 5.97340 6.20479 6.50133 6.53171 6.75480 6.86242 6.86451 7.44126 8.14269 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024785 B = 0.003103 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.422407 B = 9020.660227 C = 9414.347576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.137 4.137 4 C 0.051 3.949 5 H 0.106 0.894 6 C 0.052 3.948 7 O -0.583 6.583 8 O -0.157 6.157 9 N -0.592 5.592 10 C 0.583 3.417 11 O -0.599 6.599 12 C -0.285 4.285 13 C -0.053 4.053 14 C -0.194 4.194 15 C 0.103 3.897 16 C -0.468 4.468 17 H 0.087 0.913 18 C 0.039 3.961 19 N -0.793 5.793 20 Si 0.988 3.012 21 H -0.258 1.258 22 H -0.263 1.263 23 H -0.260 1.260 24 C -0.250 4.250 25 C -0.028 4.028 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.031 0.969 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.044 0.956 35 H 0.394 0.606 36 H 0.416 0.584 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.299 0.701 40 H 0.107 0.893 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.642 13.401 -5.071 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 C -0.194 4.194 4 C -0.007 4.007 5 H 0.123 0.877 6 C -0.026 4.026 7 O -0.391 6.391 8 O -0.161 6.161 9 N -0.295 5.295 10 C 0.378 3.622 11 O -0.482 6.482 12 C -0.290 4.290 13 C -0.072 4.072 14 C -0.213 4.213 15 C 0.100 3.900 16 C -0.495 4.495 17 H 0.105 0.895 18 C -0.181 4.181 19 N -0.417 5.417 20 Si 0.807 3.193 21 H -0.182 1.182 22 H -0.187 1.187 23 H -0.184 1.184 24 C -0.269 4.269 25 C -0.048 4.048 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.243 0.757 36 H 0.259 0.741 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.110 0.890 40 H 0.125 0.875 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.665 13.063 -5.934 15.425 hybrid contribution 0.683 -0.046 0.995 1.208 sum 6.348 13.017 -4.938 15.301 Atomic orbital electron populations 1.21827 0.94857 1.01078 1.02784 1.21030 0.95991 0.96939 0.95913 1.21817 1.01705 0.92506 1.03346 1.23220 0.93548 0.82249 1.01645 0.87660 1.22845 0.93831 0.99015 0.86903 1.86525 1.28263 1.85430 1.38845 1.90660 1.88379 1.29122 1.07951 1.47364 1.70164 1.12925 0.99039 1.18564 0.75273 0.79009 0.89327 1.90635 1.53081 1.62728 1.41728 1.18794 1.23086 0.97314 0.89833 1.20702 0.96765 0.97950 0.91761 1.21014 1.06815 0.97262 0.96259 1.18145 0.86190 0.92498 0.93192 1.20139 1.42265 0.95780 0.91330 0.89460 1.26920 0.90956 0.94503 1.05684 1.69746 1.28283 1.08312 1.35309 0.85151 0.80143 0.79200 0.74765 1.18217 1.18743 1.18380 1.20848 1.12436 1.01190 0.92466 1.20463 0.94349 0.93422 0.96532 0.90934 0.91815 0.94936 0.91426 0.91227 0.91420 0.90968 0.89011 0.93723 0.75650 0.74068 0.85700 0.86386 0.89009 0.87461 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.05 71.98 0.65 -2.63 16 2 C -0.08 -1.67 2.52 -10.79 -0.03 -1.70 16 3 C -0.14 -1.84 8.84 71.98 0.64 -1.20 16 4 C 0.05 1.21 2.22 30.59 0.07 1.28 16 5 H 0.11 2.00 7.94 -2.39 -0.02 1.98 16 6 C 0.05 1.01 6.41 71.98 0.46 1.47 16 7 O -0.58 -13.11 12.74 -144.30 -1.84 -14.95 16 8 O -0.16 -5.57 10.04 -16.47 -0.17 -5.74 16 9 N -0.59 -21.40 6.32 -175.74 -1.11 -22.52 16 10 C 0.58 26.59 7.91 86.73 0.69 27.27 16 11 O -0.60 -32.01 16.73 13.34 0.22 -31.79 16 12 C -0.29 -13.15 5.89 -19.93 -0.12 -13.27 16 13 C -0.05 -2.25 9.47 22.25 0.21 -2.04 16 14 C -0.19 -9.25 8.64 22.47 0.19 -9.06 16 15 C 0.10 5.21 5.58 -21.28 -0.12 5.09 16 16 C -0.47 -22.92 9.04 23.46 0.21 -22.71 16 17 H 0.09 4.09 7.91 -2.91 -0.02 4.06 16 18 C 0.04 1.75 5.14 85.35 0.44 2.19 16 19 N -0.79 -36.43 10.95 21.87 0.24 -36.19 16 20 Si 0.99 33.46 29.60 68.60 2.03 35.49 16 21 H -0.26 -8.61 7.11 99.48 0.71 -7.91 16 22 H -0.26 -8.34 7.11 99.48 0.71 -7.63 16 23 H -0.26 -8.66 7.11 99.48 0.71 -7.96 16 24 C -0.25 -12.23 9.73 22.47 0.22 -12.01 16 25 C -0.03 -1.37 9.52 22.25 0.21 -1.16 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.03 0.93 7.68 -2.39 -0.02 0.91 16 29 H 0.07 1.74 7.56 -2.39 -0.02 1.72 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.80 6.55 -2.39 -0.02 0.79 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 1.13 6.71 -2.38 -0.02 1.11 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.39 5.05 9.12 -74.05 -0.68 4.38 16 36 H 0.42 11.98 6.43 -92.71 -0.60 11.38 16 37 H 0.13 4.19 6.37 -2.91 -0.02 4.17 16 38 H 0.12 5.63 6.16 -2.91 -0.02 5.61 16 39 H 0.30 12.15 8.29 -92.71 -0.77 11.38 16 40 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 41 H 0.10 4.86 7.63 -2.91 -0.02 4.84 16 Total: -1.00 -68.30 344.78 2.90 -65.40 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: -0.21 Total: 38.74 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: 3.73 Total: -28.46 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -0.87 Total: -58.70 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -1.78 Total: -52.48 kcal Atomic # 14 Polarization: 33.46 SS G_CDS: 2.03 Total: 35.49 kcal Total: -68.30 2.90 -65.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836892063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.436 kcal (2) G-P(sol) polarization free energy of solvation -68.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds