Wall clock time and date at job start Tue Mar 31 2020 07:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47196 * 2 1 4 4 C 1.52999 * 109.47028 * 120.00501 * 2 1 3 5 5 H 1.09004 * 109.46829 * 299.99493 * 4 2 1 6 6 C 1.52997 * 109.47059 * 180.02562 * 4 2 1 7 7 O 1.42903 * 109.47083 * 304.99662 * 6 4 2 8 8 O 1.42898 * 109.47467 * 59.99467 * 4 2 1 9 9 N 1.41597 * 114.00007 * 204.99896 * 8 4 2 10 10 C 1.34775 * 120.00208 * 180.02562 * 9 8 4 11 11 O 1.21553 * 119.99586 * 359.72761 * 10 9 8 12 12 C 1.47887 * 120.00336 * 179.97438 * 10 9 8 13 13 C 1.39915 * 120.02511 * 359.73442 * 12 10 9 14 14 C 1.38323 * 120.35985 * 179.71267 * 13 12 10 15 15 C 1.37751 * 120.41008 * 0.55927 * 14 13 12 16 16 C 1.40746 * 120.03995 * 359.71801 * 15 14 13 17 17 C 1.41441 * 120.17790 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00195 * 334.93042 * 17 16 15 19 19 C 1.39943 * 119.99935 * 154.92517 * 17 16 15 20 20 N 1.30822 * 119.99873 * 342.59115 * 19 17 16 21 21 Si 1.86793 * 119.99911 * 162.58395 * 19 17 16 22 22 H 1.48508 * 109.47216 * 90.00216 * 21 19 17 23 23 H 1.48496 * 109.47501 * 210.00078 * 21 19 17 24 24 H 1.48503 * 109.47442 * 330.00609 * 21 19 17 25 25 C 1.38998 * 120.02456 * 179.97438 * 12 10 9 26 26 H 1.08996 * 109.47460 * 59.99884 * 1 2 3 27 27 H 1.09001 * 109.47163 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46901 * 300.00050 * 1 2 3 29 29 H 1.09000 * 109.46434 * 239.99939 * 2 1 3 30 30 H 1.08995 * 109.47111 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47011 * 300.00391 * 3 2 1 32 32 H 1.08999 * 109.46798 * 60.00265 * 3 2 1 33 33 H 1.08996 * 109.47275 * 64.99131 * 6 4 2 34 34 H 1.08998 * 109.47203 * 185.00015 * 6 4 2 35 35 H 0.96693 * 114.00617 * 180.02562 * 7 6 4 36 36 H 0.96999 * 120.00046 * 0.02562 * 9 8 4 37 37 H 1.08000 * 119.81882 * 359.96879 * 13 12 10 38 38 H 1.08001 * 119.79650 * 180.27227 * 14 13 12 39 39 H 1.08009 * 119.98192 * 179.69622 * 15 14 13 40 40 H 0.97001 * 120.00182 * 179.97438 * 20 19 17 41 41 H 1.08003 * 120.20367 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5700 -0.7208 1.2495 7 8 4.0468 -1.2898 0.0284 8 8 1.5636 -2.0686 1.2492 9 7 1.4780 -2.6492 2.5378 10 6 1.0432 -3.9171 2.6782 11 8 0.7199 -4.5606 1.6989 12 6 0.9543 -4.5237 4.0240 13 6 1.3267 -3.7836 5.1515 14 6 1.2407 -4.3421 6.4140 15 6 0.7985 -5.6368 6.5752 16 6 0.4250 -6.3986 5.4522 17 6 -0.0299 -7.7280 5.6144 18 1 0.2702 -8.2997 6.4801 19 6 -0.8691 -8.3026 4.6530 20 7 -1.5052 -7.5406 3.8008 21 14 -1.0807 -10.1573 4.5867 22 1 -2.2160 -10.5574 5.4564 23 1 -1.3574 -10.5743 3.1886 24 1 0.1629 -10.8148 5.0624 25 6 0.5055 -5.8312 4.1693 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 3.9330 0.3030 1.3392 34 1 3.9334 -1.3103 2.0912 35 1 5.0108 -1.3221 -0.0405 36 1 1.7323 -2.1343 3.3196 37 1 1.6793 -2.7694 5.0357 38 1 1.5264 -3.7611 7.2785 39 1 0.7388 -6.0676 7.5638 40 1 -2.0865 -7.9389 3.1342 41 1 0.2203 -6.4073 3.3014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836901461.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:35 Heat of formation + Delta-G solvation = -73.410484 kcal Electronic energy + Delta-G solvation = -23293.089457 eV Core-core repulsion = 19753.605606 eV Total energy + Delta-G solvation = -3539.483851 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.31682 -38.46644 -36.96471 -36.01782 -34.89396 -33.79398 -31.76412 -29.78033 -29.46652 -28.69839 -27.05844 -25.33196 -23.45869 -22.53567 -21.01167 -20.51761 -19.41274 -18.26524 -17.67291 -17.15283 -15.98389 -15.81358 -15.33844 -15.10543 -14.79695 -14.49555 -14.12998 -13.72299 -13.63206 -13.23987 -13.05722 -12.84737 -12.64319 -12.54397 -12.30479 -12.27450 -11.75381 -11.53623 -11.21996 -11.17822 -11.09447 -10.83102 -10.75804 -10.53808 -10.42944 -10.15594 -10.06090 -9.74828 -9.24004 -9.08786 -8.44228 -7.69204 -7.57401 -6.82750 -4.45010 2.16549 2.29587 2.77907 3.07424 3.10220 3.15054 3.85782 3.91290 4.05181 4.48236 4.53456 4.60879 4.64605 4.90205 5.08751 5.16317 5.21553 5.41121 5.47673 5.53361 5.55508 5.65234 5.69643 5.78328 5.93850 6.00336 6.18662 6.22550 6.29620 6.65617 6.91506 6.95088 7.16314 7.24795 7.31771 7.47668 7.61660 7.67263 7.86147 7.99137 8.13627 8.45532 8.76631 8.78444 8.98426 10.11984 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023399 B = 0.003447 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.365294 B = 8121.578116 C = 8623.120319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 C -0.143 4.143 4 C 0.067 3.933 5 H 0.084 0.916 6 C 0.051 3.949 7 O -0.557 6.557 8 O -0.129 6.129 9 N -0.605 5.605 10 C 0.575 3.425 11 O -0.525 6.525 12 C -0.115 4.115 13 C -0.224 4.224 14 C -0.094 4.094 15 C -0.212 4.212 16 C 0.101 3.899 17 C -0.458 4.458 18 H 0.082 0.918 19 C 0.073 3.927 20 N -0.781 5.781 21 Si 0.911 3.089 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.260 1.260 25 C -0.089 4.089 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.376 0.624 36 H 0.402 0.598 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.286 0.714 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.178 14.545 -3.238 16.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.103 4.103 3 C -0.201 4.201 4 C 0.008 3.992 5 H 0.102 0.898 6 C -0.027 4.027 7 O -0.362 6.362 8 O -0.132 6.132 9 N -0.311 5.311 10 C 0.366 3.634 11 O -0.400 6.400 12 C -0.118 4.118 13 C -0.244 4.244 14 C -0.112 4.112 15 C -0.232 4.232 16 C 0.098 3.902 17 C -0.486 4.486 18 H 0.101 0.899 19 C -0.147 4.147 20 N -0.405 5.405 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.183 1.183 25 C -0.109 4.109 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.222 0.778 36 H 0.243 0.757 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.052 13.901 -4.464 15.805 hybrid contribution 0.696 -0.046 0.562 0.896 sum 6.748 13.855 -3.901 15.897 Atomic orbital electron populations 1.21844 0.94369 1.03073 1.01435 1.21024 0.96401 0.95301 0.97529 1.21850 1.01152 0.94939 1.02141 1.22735 0.91981 0.84385 1.00136 0.89796 1.22807 0.95256 0.97143 0.87515 1.86574 1.26277 1.85065 1.38241 1.90670 1.87664 1.26290 1.08566 1.47825 1.71594 1.13688 0.97947 1.18930 0.75774 0.78325 0.90340 1.90730 1.48105 1.60950 1.40218 1.19218 1.07254 0.96435 0.88933 1.20300 1.12986 0.98445 0.92699 1.20416 1.00035 0.95487 0.95280 1.21106 1.10197 0.94402 0.97468 1.17580 0.89352 0.92912 0.90317 1.19597 1.25132 0.97322 1.06583 0.89943 1.25988 0.93811 1.00839 0.94076 1.69775 1.18970 1.37782 1.13929 0.86264 0.79676 0.82037 0.78541 1.19418 1.19884 1.18345 1.21624 0.98052 0.92475 0.98756 0.92502 0.91405 0.92902 0.89140 0.92330 0.91914 0.92653 0.92585 0.93236 0.77793 0.75695 0.89447 0.88768 0.88464 0.90268 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.05 37.16 0.34 -1.40 16 2 C -0.08 -0.93 2.52 -90.62 -0.23 -1.16 16 3 C -0.14 -1.17 8.84 37.16 0.33 -0.84 16 4 C 0.07 0.83 2.22 -26.73 -0.06 0.77 16 5 H 0.08 0.87 7.94 -51.93 -0.41 0.46 16 6 C 0.05 0.54 6.42 37.16 0.24 0.78 16 7 O -0.56 -6.60 12.75 -40.03 -0.51 -7.11 16 8 O -0.13 -2.30 10.04 -34.78 -0.35 -2.65 16 9 N -0.61 -11.09 6.32 30.54 0.19 -10.90 16 10 C 0.58 13.37 7.92 -12.31 -0.10 13.27 16 11 O -0.53 -14.34 16.74 -12.84 -0.21 -14.55 16 12 C -0.11 -2.72 5.87 -105.04 -0.62 -3.33 16 13 C -0.22 -4.60 9.55 -38.92 -0.37 -4.98 16 14 C -0.09 -1.94 10.01 -39.73 -0.40 -2.34 16 15 C -0.21 -4.92 9.78 -38.81 -0.38 -5.30 16 16 C 0.10 2.64 5.57 -106.87 -0.59 2.04 16 17 C -0.46 -11.87 9.05 -37.72 -0.34 -12.21 16 18 H 0.08 2.02 7.90 -52.49 -0.41 1.60 16 19 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 20 N -0.78 -20.65 10.97 55.55 0.61 -20.04 16 21 Si 0.91 18.67 29.59 -169.99 -5.03 13.64 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 24 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 25 C -0.09 -2.37 8.23 -38.44 -0.32 -2.68 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.97 7.68 -51.93 -0.40 0.57 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.18 7.56 -51.93 -0.39 0.79 16 30 H 0.06 0.44 6.54 -51.93 -0.34 0.10 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.43 6.71 -51.93 -0.35 0.08 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.38 2.66 9.12 45.56 0.42 3.08 16 36 H 0.40 5.93 6.44 -40.82 -0.26 5.67 16 37 H 0.09 1.45 6.38 -52.49 -0.33 1.11 16 38 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.10 2.09 8.06 -52.48 -0.42 1.66 16 40 H 0.29 6.97 8.30 -40.82 -0.34 6.63 16 41 H 0.14 3.92 5.76 -52.48 -0.30 3.61 16 LS Contribution 345.06 15.07 5.20 5.20 Total: -1.00 -32.49 345.06 -7.58 -40.07 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -4.89 Total: 11.98 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -2.59 Total: -15.64 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 0.80 Total: -30.94 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -1.07 Total: -24.31 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.49 -7.58 -40.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836901461.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.345 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds