Wall clock time and date at job start Tue Mar 31 2020 07:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47196 * 2 1 4 4 C 1.52999 * 109.47028 * 120.00501 * 2 1 3 5 5 H 1.09004 * 109.46829 * 299.99493 * 4 2 1 6 6 C 1.52997 * 109.47059 * 180.02562 * 4 2 1 7 7 O 1.42903 * 109.47083 * 304.99662 * 6 4 2 8 8 O 1.42898 * 109.47467 * 59.99467 * 4 2 1 9 9 N 1.41597 * 114.00007 * 204.99896 * 8 4 2 10 10 C 1.34775 * 120.00208 * 180.02562 * 9 8 4 11 11 O 1.21553 * 119.99586 * 359.72761 * 10 9 8 12 12 C 1.47887 * 120.00336 * 179.97438 * 10 9 8 13 13 C 1.39915 * 120.02511 * 359.73442 * 12 10 9 14 14 C 1.38323 * 120.35985 * 179.71267 * 13 12 10 15 15 C 1.37751 * 120.41008 * 0.55927 * 14 13 12 16 16 C 1.40746 * 120.03995 * 359.71801 * 15 14 13 17 17 C 1.41441 * 120.17790 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00195 * 334.93042 * 17 16 15 19 19 C 1.39943 * 119.99935 * 154.92517 * 17 16 15 20 20 N 1.30822 * 119.99873 * 342.59115 * 19 17 16 21 21 Si 1.86793 * 119.99911 * 162.58395 * 19 17 16 22 22 H 1.48508 * 109.47216 * 90.00216 * 21 19 17 23 23 H 1.48496 * 109.47501 * 210.00078 * 21 19 17 24 24 H 1.48503 * 109.47442 * 330.00609 * 21 19 17 25 25 C 1.38998 * 120.02456 * 179.97438 * 12 10 9 26 26 H 1.08996 * 109.47460 * 59.99884 * 1 2 3 27 27 H 1.09001 * 109.47163 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46901 * 300.00050 * 1 2 3 29 29 H 1.09000 * 109.46434 * 239.99939 * 2 1 3 30 30 H 1.08995 * 109.47111 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47011 * 300.00391 * 3 2 1 32 32 H 1.08999 * 109.46798 * 60.00265 * 3 2 1 33 33 H 1.08996 * 109.47275 * 64.99131 * 6 4 2 34 34 H 1.08998 * 109.47203 * 185.00015 * 6 4 2 35 35 H 0.96693 * 114.00617 * 180.02562 * 7 6 4 36 36 H 0.96999 * 120.00046 * 0.02562 * 9 8 4 37 37 H 1.08000 * 119.81882 * 359.96879 * 13 12 10 38 38 H 1.08001 * 119.79650 * 180.27227 * 14 13 12 39 39 H 1.08009 * 119.98192 * 179.69622 * 15 14 13 40 40 H 0.97001 * 120.00182 * 179.97438 * 20 19 17 41 41 H 1.08003 * 120.20367 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5700 -0.7208 1.2495 7 8 4.0468 -1.2898 0.0284 8 8 1.5636 -2.0686 1.2492 9 7 1.4780 -2.6492 2.5378 10 6 1.0432 -3.9171 2.6782 11 8 0.7199 -4.5606 1.6989 12 6 0.9543 -4.5237 4.0240 13 6 1.3267 -3.7836 5.1515 14 6 1.2407 -4.3421 6.4140 15 6 0.7985 -5.6368 6.5752 16 6 0.4250 -6.3986 5.4522 17 6 -0.0299 -7.7280 5.6144 18 1 0.2702 -8.2997 6.4801 19 6 -0.8691 -8.3026 4.6530 20 7 -1.5052 -7.5406 3.8008 21 14 -1.0807 -10.1573 4.5867 22 1 -2.2160 -10.5574 5.4564 23 1 -1.3574 -10.5743 3.1886 24 1 0.1629 -10.8148 5.0624 25 6 0.5055 -5.8312 4.1693 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 3.9330 0.3030 1.3392 34 1 3.9334 -1.3103 2.0912 35 1 5.0108 -1.3221 -0.0405 36 1 1.7323 -2.1343 3.3196 37 1 1.6793 -2.7694 5.0357 38 1 1.5264 -3.7611 7.2785 39 1 0.7388 -6.0676 7.5638 40 1 -2.0865 -7.9389 3.1342 41 1 0.2203 -6.4073 3.3014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836901461.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:35 Heat of formation + Delta-G solvation = -95.860595 kcal Electronic energy + Delta-G solvation = -23294.062967 eV Core-core repulsion = 19753.605606 eV Total energy + Delta-G solvation = -3540.457361 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.88782 -39.76124 -38.70386 -37.16358 -35.96311 -35.61405 -33.41364 -31.48711 -31.22998 -29.70766 -27.85050 -27.18642 -24.72596 -23.95872 -22.81496 -21.80011 -20.84206 -19.64932 -19.26635 -18.18483 -17.66449 -17.15986 -16.79479 -16.52323 -16.17655 -15.87991 -15.75266 -15.13580 -15.06788 -14.59001 -14.48282 -14.29275 -14.04251 -13.61468 -13.50884 -13.21918 -13.00616 -12.96866 -12.78273 -12.67520 -12.51698 -12.21660 -12.09497 -11.93646 -11.68227 -11.53513 -11.43364 -11.07004 -10.98689 -10.88622 -9.99076 -9.49605 -9.40578 -8.66999 -6.38874 0.32722 0.86993 0.99638 1.37229 1.46966 1.53504 2.05195 2.19584 2.77054 3.23716 3.47266 3.60376 3.67746 3.78391 3.84993 4.08184 4.29435 4.37312 4.40159 4.45537 4.50584 4.56359 4.75187 4.76489 4.88347 4.93827 4.98634 5.06785 5.15722 5.19256 5.29351 5.35053 5.39231 5.47992 5.77483 5.83972 5.88501 6.04205 6.25027 6.39478 6.60314 6.86862 6.87237 6.92938 7.30760 8.29756 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023399 B = 0.003447 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.365294 B = 8121.578116 C = 8623.120319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.136 4.136 4 C 0.051 3.949 5 H 0.112 0.888 6 C 0.051 3.949 7 O -0.585 6.585 8 O -0.158 6.158 9 N -0.580 5.580 10 C 0.572 3.428 11 O -0.581 6.581 12 C -0.125 4.125 13 C -0.198 4.198 14 C -0.090 4.090 15 C -0.213 4.213 16 C 0.070 3.930 17 C -0.495 4.495 18 H 0.088 0.912 19 C 0.028 3.972 20 N -0.825 5.825 21 Si 0.982 3.018 22 H -0.256 1.256 23 H -0.275 1.275 24 H -0.254 1.254 25 C -0.129 4.129 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.394 0.606 36 H 0.421 0.579 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.113 0.887 40 H 0.286 0.714 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.782 17.532 -1.497 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 C -0.193 4.193 4 C -0.007 4.007 5 H 0.129 0.871 6 C -0.026 4.026 7 O -0.393 6.393 8 O -0.162 6.162 9 N -0.284 5.284 10 C 0.363 3.637 11 O -0.461 6.461 12 C -0.129 4.129 13 C -0.218 4.218 14 C -0.108 4.108 15 C -0.232 4.232 16 C 0.068 3.932 17 C -0.524 4.524 18 H 0.106 0.894 19 C -0.187 4.187 20 N -0.451 5.451 21 Si 0.803 3.197 22 H -0.181 1.181 23 H -0.200 1.200 24 H -0.177 1.177 25 C -0.149 4.149 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.066 0.934 35 H 0.244 0.756 36 H 0.266 0.734 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.131 0.869 40 H 0.097 0.903 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.704 16.961 -2.679 18.820 hybrid contribution 0.322 -0.672 0.029 0.745 sum 8.026 16.289 -2.650 18.351 Atomic orbital electron populations 1.21836 0.94965 1.00950 1.02883 1.21040 0.95899 0.97078 0.95956 1.21811 1.01737 0.92311 1.03413 1.23273 0.93697 0.81966 1.01798 0.87069 1.22871 0.93641 0.99193 0.86934 1.86534 1.28278 1.85503 1.38984 1.90702 1.88404 1.29456 1.07636 1.47283 1.69250 1.12423 0.99470 1.18895 0.75682 0.79516 0.89615 1.90697 1.50798 1.62811 1.41779 1.19424 1.07065 0.95901 0.90494 1.20849 1.09545 1.00021 0.91398 1.20937 0.98229 0.94652 0.96989 1.21455 1.09040 0.95518 0.97220 1.17913 0.90451 0.93810 0.91062 1.19883 1.26569 0.98253 1.07724 0.89443 1.26880 0.93025 1.05456 0.93319 1.69886 1.20354 1.39726 1.15130 0.85196 0.80013 0.76058 0.78451 1.18053 1.20005 1.17701 1.21409 1.01382 0.94136 0.98009 0.91043 0.95228 0.91521 0.91670 0.91328 0.91114 0.90964 0.88769 0.93414 0.75629 0.73406 0.84343 0.83764 0.86927 0.90316 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.05 71.98 0.65 -2.66 16 2 C -0.08 -1.66 2.52 -10.79 -0.03 -1.69 16 3 C -0.14 -1.72 8.84 71.98 0.64 -1.08 16 4 C 0.05 1.14 2.22 30.59 0.07 1.21 16 5 H 0.11 1.87 7.94 -2.38 -0.02 1.85 16 6 C 0.05 0.93 6.42 71.98 0.46 1.39 16 7 O -0.59 -12.92 12.75 -144.40 -1.84 -14.76 16 8 O -0.16 -5.57 10.04 -16.48 -0.17 -5.74 16 9 N -0.58 -20.54 6.32 -175.57 -1.11 -21.65 16 10 C 0.57 27.10 7.92 86.80 0.69 27.79 16 11 O -0.58 -33.62 16.74 13.48 0.23 -33.40 16 12 C -0.13 -5.97 5.87 -20.13 -0.12 -6.09 16 13 C -0.20 -7.48 9.55 22.70 0.22 -7.26 16 14 C -0.09 -3.38 10.01 22.17 0.22 -3.16 16 15 C -0.21 -9.59 9.78 22.77 0.22 -9.37 16 16 C 0.07 3.76 5.57 -21.32 -0.12 3.64 16 17 C -0.50 -26.77 9.05 23.47 0.21 -26.56 16 18 H 0.09 4.41 7.90 -2.91 -0.02 4.39 16 19 C 0.03 1.48 5.14 85.26 0.44 1.92 16 20 N -0.83 -46.69 10.97 21.83 0.24 -46.45 16 21 Si 0.98 39.88 29.59 68.60 2.03 41.91 16 22 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 23 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 24 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 25 C -0.13 -7.20 8.23 23.01 0.19 -7.01 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.03 0.87 7.68 -2.39 -0.02 0.85 16 28 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.06 1.69 7.56 -2.39 -0.02 1.67 16 30 H 0.07 0.75 6.54 -2.39 -0.02 0.74 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 1.00 6.71 -2.39 -0.02 0.99 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.39 4.88 9.12 -74.06 -0.68 4.21 16 36 H 0.42 10.97 6.44 -92.71 -0.60 10.37 16 37 H 0.14 3.75 6.38 -2.91 -0.02 3.73 16 38 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 39 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 40 H 0.29 15.01 8.30 -92.71 -0.77 14.24 16 41 H 0.10 6.12 5.76 -2.91 -0.02 6.10 16 Total: -1.00 -77.84 345.06 2.91 -74.93 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: -0.21 Total: 34.09 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 3.74 Total: -28.93 kcal Atomic # 7 Polarization: -67.23 SS G_CDS: -0.87 Total: -68.11 kcal Atomic # 8 Polarization: -52.12 SS G_CDS: -1.78 Total: -53.90 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -77.84 2.91 -74.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836901461.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.934 kcal (2) G-P(sol) polarization free energy of solvation -77.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds