Wall clock time and date at job start Tue Mar 31 2020 07:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47050 * 2 1 4 4 C 1.50698 * 109.47501 * 239.99470 * 2 1 3 5 5 H 1.07993 * 120.00017 * 240.00497 * 4 2 1 6 6 C 1.37882 * 119.99892 * 60.00026 * 4 2 1 7 7 N 1.31515 * 120.00032 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46880 * 90.00075 * 8 6 4 10 10 H 1.48493 * 109.47080 * 210.00261 * 8 6 4 11 11 H 1.48503 * 109.46801 * 330.00434 * 8 6 4 12 12 C 1.53004 * 109.46783 * 119.99547 * 2 1 3 13 13 N 1.46900 * 109.47069 * 300.00422 * 12 2 1 14 14 C 1.46904 * 111.00039 * 180.02562 * 13 12 2 15 15 C 1.50692 * 109.47249 * 179.97438 * 14 13 12 16 16 C 1.38265 * 119.95988 * 105.00148 * 15 14 13 17 17 C 1.38479 * 120.09880 * 180.28039 * 16 15 14 18 18 C 1.39307 * 119.91951 * 359.50626 * 17 16 15 19 19 C 1.38481 * 119.87875 * 0.49104 * 18 17 16 20 20 C 1.38661 * 119.95831 * 285.02257 * 15 14 13 21 21 O 1.35975 * 119.98394 * 359.97425 * 20 15 14 22 22 O 1.36510 * 108.64147 * 180.28585 * 18 17 16 23 23 C 1.43986 * 105.49808 * 17.53138 * 22 18 17 24 24 O 1.36611 * 131.47014 * 180.36416 * 17 16 15 25 25 H 1.08995 * 109.47415 * 300.00595 * 1 2 3 26 26 H 1.09002 * 109.46955 * 60.00467 * 1 2 3 27 27 H 1.08996 * 109.47344 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47248 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47384 * 299.99616 * 3 2 1 30 30 H 1.08995 * 109.47497 * 59.99456 * 3 2 1 31 31 H 0.96993 * 120.00269 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.46820 * 180.02562 * 12 2 1 33 33 H 1.09000 * 109.47272 * 59.99941 * 12 2 1 34 34 H 1.00903 * 111.00268 * 56.04479 * 13 12 2 35 35 H 1.08995 * 109.46945 * 59.99445 * 14 13 12 36 36 H 1.09005 * 109.46943 * 300.00074 * 14 13 12 37 37 H 1.08002 * 119.94632 * 359.97438 * 16 15 14 38 38 H 1.08007 * 120.00496 * 179.72711 * 19 18 17 39 39 H 0.96702 * 114.00098 * 90.00465 * 21 20 15 40 40 H 1.09006 * 110.56855 * 91.41402 * 23 22 18 41 41 H 1.09000 * 110.56734 * 214.27832 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6532 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8300 -2.6035 8 14 2.3227 -1.1198 -4.0078 9 1 1.3450 -2.1618 -4.4122 10 1 2.4875 -0.1405 -5.1119 11 1 3.6310 -1.7568 -3.7116 12 6 2.0399 -0.7212 1.2494 13 7 1.5501 -0.0286 2.4487 14 6 2.0216 -0.6943 3.6704 15 6 1.5009 0.0430 4.8771 16 6 0.4610 -0.4899 5.6163 17 6 -0.0236 0.1881 6.7223 18 6 0.5447 1.4037 7.0962 19 6 1.5862 1.9355 6.3543 20 6 2.0649 1.2552 5.2445 21 8 3.0876 1.7774 4.5162 22 8 -0.0990 1.8624 8.2092 23 6 -0.7865 0.7206 8.7540 24 8 -1.0181 -0.1186 7.6072 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 0.7097 1.1616 -3.4845 32 1 3.1299 -0.7208 1.2496 33 1 1.6766 -1.7488 1.2494 34 1 0.5436 0.0415 2.4401 35 1 3.1114 -0.6938 3.6870 36 1 1.6585 -1.7220 3.6875 37 1 0.0227 -1.4339 5.3277 38 1 2.0254 2.8800 6.6398 39 1 2.8020 2.3540 3.7943 40 1 -0.1592 0.2079 9.4833 41 1 -1.7318 1.0222 9.2051 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839162871.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:42 Heat of formation + Delta-G solvation = -97.736426 kcal Electronic energy + Delta-G solvation = -23542.203742 eV Core-core repulsion = 20001.665039 eV Total energy + Delta-G solvation = -3540.538703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.15666 -40.29604 -38.49361 -37.32655 -36.88835 -35.51226 -33.17338 -31.42481 -30.20524 -27.45754 -27.41493 -27.17990 -26.16583 -24.59101 -23.95884 -22.69742 -20.31504 -19.84841 -18.69310 -18.53868 -17.93613 -17.58312 -17.11393 -16.74975 -16.23537 -15.76108 -15.62922 -15.45129 -15.12457 -14.91258 -14.80173 -14.27689 -13.99840 -13.88897 -13.80629 -13.46624 -13.03925 -12.99665 -12.75399 -12.73948 -12.49691 -12.38034 -12.08239 -12.02051 -11.57249 -11.47415 -11.25437 -10.90317 -10.55611 -10.30862 -9.88599 -9.17303 -8.94858 -7.93984 -6.10325 -0.02358 0.10312 1.43405 1.46260 1.54086 1.73746 2.31914 2.45540 2.49481 3.28396 3.39627 3.43899 3.58065 3.78915 3.84923 4.04299 4.08397 4.24280 4.44618 4.55875 4.61233 4.72958 4.78529 4.88409 4.93598 4.98137 5.08554 5.09096 5.20534 5.23489 5.34675 5.43767 5.49045 5.59683 5.73848 5.82784 6.03458 6.19261 6.28803 6.38849 6.52961 6.65610 6.85795 6.99995 7.57286 9.03797 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.033886 B = 0.003117 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.098714 B = 8980.540377 C = 9199.541924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.061 3.939 3 C -0.105 4.105 4 C -0.526 4.526 5 H 0.045 0.955 6 C 0.023 3.977 7 N -0.903 5.903 8 Si 0.941 3.059 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.091 3.909 13 N -0.676 5.676 14 C 0.110 3.890 15 C -0.099 4.099 16 C -0.081 4.081 17 C 0.009 3.991 18 C 0.038 3.962 19 C -0.136 4.136 20 C 0.144 3.856 21 O -0.493 6.493 22 O -0.322 6.322 23 C 0.205 3.795 24 O -0.323 6.323 25 H 0.034 0.966 26 H 0.053 0.947 27 H 0.015 0.985 28 H 0.012 0.988 29 H 0.045 0.955 30 H 0.039 0.961 31 H 0.256 0.744 32 H 0.052 0.948 33 H 0.010 0.990 34 H 0.338 0.662 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.411 0.589 40 H 0.105 0.895 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 0.385 21.358 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.060 3.940 3 C -0.163 4.163 4 C -0.565 4.565 5 H 0.063 0.937 6 C -0.176 4.176 7 N -0.542 5.542 8 Si 0.768 3.232 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.038 4.038 13 N -0.308 5.308 14 C -0.019 4.019 15 C -0.101 4.101 16 C -0.100 4.100 17 C -0.035 4.035 18 C -0.007 4.007 19 C -0.155 4.155 20 C 0.098 3.902 21 O -0.306 6.306 22 O -0.238 6.238 23 C 0.094 3.906 24 O -0.240 6.240 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.028 0.972 34 H 0.157 0.843 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.167 0.833 38 H 0.170 0.830 39 H 0.270 0.730 40 H 0.123 0.877 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.416 0.707 21.687 21.745 hybrid contribution -0.647 -0.938 -1.253 1.694 sum -2.062 -0.232 20.435 20.540 Atomic orbital electron populations 1.21671 0.98337 0.97977 0.99948 1.18132 0.92211 0.93089 0.90568 1.21456 0.97175 0.98138 0.99489 1.21470 1.31094 1.11860 0.92035 0.93719 1.25504 0.95419 0.95622 1.01074 1.69962 1.37540 1.23544 1.23173 0.85822 0.78725 0.78433 0.80179 1.20655 1.21231 1.19792 1.21820 0.98509 0.93939 0.89510 1.60513 1.16280 1.53550 1.00466 1.20666 1.00536 0.94339 0.86338 1.19892 0.96219 0.96586 0.97369 1.19961 0.96069 1.00686 0.93279 1.19813 0.91601 0.95604 0.96515 1.19629 0.96187 0.93466 0.91380 1.20351 0.95472 1.02824 0.96863 1.17735 0.88833 0.92076 0.91584 1.84696 1.29787 1.67944 1.48131 1.87328 1.62920 1.34813 1.38758 1.26151 1.00024 0.77230 0.87172 1.87345 1.46278 1.62305 1.28081 0.94690 0.92766 0.96587 0.96896 0.93641 0.94185 0.93419 0.92965 0.97163 0.84264 0.90075 0.93859 0.83349 0.82952 0.72965 0.87714 0.82043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 7.92 71.98 0.57 -4.96 16 2 C 0.06 2.80 0.57 -52.93 -0.03 2.77 16 3 C -0.10 -4.84 8.09 71.98 0.58 -4.26 16 4 C -0.53 -27.82 8.01 25.60 0.21 -27.62 16 5 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 6 C 0.02 1.22 5.15 84.66 0.44 1.66 16 7 N -0.90 -49.80 9.35 21.45 0.20 -49.60 16 8 Si 0.94 42.97 29.54 68.60 2.03 44.99 16 9 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 10 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 C 0.09 3.53 4.59 86.30 0.40 3.93 16 13 N -0.68 -21.30 5.70 -517.93 -2.95 -24.26 16 14 C 0.11 2.94 5.42 85.55 0.46 3.40 16 15 C -0.10 -2.46 5.41 -19.76 -0.11 -2.57 16 16 C -0.08 -1.89 9.67 22.33 0.22 -1.68 16 17 C 0.01 0.21 7.16 22.58 0.16 0.37 16 18 C 0.04 0.91 7.14 22.59 0.16 1.07 16 19 C -0.14 -3.13 10.00 22.44 0.22 -2.91 16 20 C 0.14 3.53 6.67 22.48 0.15 3.68 16 21 O -0.49 -12.07 12.82 -93.27 -1.20 -13.27 16 22 O -0.32 -6.87 11.40 -76.16 -0.87 -7.74 16 23 C 0.20 2.97 8.89 113.37 1.01 3.98 16 24 O -0.32 -7.04 11.40 -77.36 -0.88 -7.92 16 25 H 0.03 1.38 6.57 -2.39 -0.02 1.36 16 26 H 0.05 2.80 6.07 -2.39 -0.01 2.78 16 27 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.04 2.36 6.07 -2.39 -0.01 2.35 16 30 H 0.04 1.63 7.60 -2.39 -0.02 1.61 16 31 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.34 10.72 6.76 -89.69 -0.61 10.12 16 35 H 0.08 2.27 8.00 -2.39 -0.02 2.25 16 36 H 0.04 1.09 7.95 -2.38 -0.02 1.07 16 37 H 0.15 3.03 8.00 -2.91 -0.02 3.01 16 38 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 39 H 0.41 8.31 9.06 -74.06 -0.67 7.63 16 40 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.16 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -60.92 335.28 0.55 -60.37 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -0.21 Total: 20.55 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 4.44 Total: -23.13 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -2.75 Total: -73.85 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -2.95 Total: -28.93 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -60.92 0.55 -60.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839162871.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.368 kcal (2) G-P(sol) polarization free energy of solvation -60.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds