Wall clock time and date at job start Tue Mar 31 2020 07:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47452 * 2 1 4 4 C 1.52997 * 109.47205 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47168 * 180.02562 * 4 3 2 6 6 C 1.34776 * 120.00286 * 179.97438 * 5 4 3 7 7 O 1.21282 * 119.99600 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00243 * 180.27347 * 6 5 4 9 9 O 1.42898 * 109.46862 * 179.72780 * 8 6 5 10 10 C 1.35900 * 116.99824 * 180.02562 * 9 8 6 11 11 C 1.38826 * 120.02014 * 359.72611 * 10 9 8 12 12 C 1.38191 * 120.08341 * 179.71798 * 11 10 9 13 13 C 1.38157 * 120.12033 * 0.55637 * 12 11 10 14 14 C 1.38902 * 120.04056 * 359.71617 * 13 12 11 15 15 O 1.35743 * 120.04100 * 179.97438 * 14 13 12 16 16 C 1.34826 * 117.00194 * 174.48960 * 15 14 13 17 17 H 1.08003 * 119.99800 * 5.06088 * 16 15 14 18 18 C 1.38653 * 120.00448 * 185.05719 * 16 15 14 19 19 N 1.31557 * 119.99661 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00322 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47021 * 90.00009 * 20 18 16 22 22 H 1.48503 * 109.47039 * 210.00530 * 20 18 16 23 23 H 1.48502 * 109.46778 * 329.99837 * 20 18 16 24 24 C 1.38573 * 120.02041 * 179.97438 * 10 9 8 25 25 H 1.09001 * 109.46891 * 59.99715 * 1 2 3 26 26 H 1.08996 * 109.47629 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46894 * 300.00625 * 1 2 3 28 28 H 1.09001 * 109.46894 * 239.99375 * 2 1 3 29 29 H 1.09004 * 109.46476 * 119.99645 * 2 1 3 30 30 H 1.09000 * 109.47106 * 59.99559 * 3 2 1 31 31 H 1.09001 * 109.47305 * 300.00031 * 3 2 1 32 32 H 1.08994 * 109.47188 * 60.00131 * 4 3 2 33 33 H 1.08995 * 109.47181 * 299.99526 * 4 3 2 34 34 H 0.96999 * 120.00256 * 359.97438 * 5 4 3 35 35 H 1.09004 * 109.46920 * 299.72590 * 8 6 5 36 36 H 1.08998 * 109.46749 * 59.72534 * 8 6 5 37 37 H 1.08008 * 119.95975 * 359.97438 * 11 10 9 38 38 H 1.07992 * 119.94461 * 180.25083 * 12 11 10 39 39 H 1.07999 * 119.97948 * 179.70096 * 13 12 11 40 40 H 0.97004 * 120.00535 * 179.97438 * 19 18 16 41 41 H 1.07993 * 120.06181 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 5.3836 3.0698 0.0001 7 8 6.1716 2.1479 -0.0008 8 6 5.8860 4.4906 0.0069 9 8 7.3149 4.4905 0.0121 10 6 7.9320 5.7013 0.0192 11 6 7.1764 6.8659 0.0154 12 6 7.8024 8.0978 0.0284 13 6 9.1819 8.1745 0.0337 14 6 9.9429 7.0125 0.0319 15 8 11.2982 7.0878 0.0365 16 6 11.9754 5.9275 0.1498 17 1 11.4417 4.9885 0.1492 18 6 13.3569 5.9395 0.2668 19 7 14.0070 7.0832 0.2679 20 14 14.2952 4.3318 0.4230 21 1 14.6624 3.8396 -0.9291 22 1 15.5279 4.5535 1.2209 23 1 13.4410 3.3241 1.1015 24 6 9.3158 5.7742 0.0250 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6768 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9338 0.9285 0.8891 34 1 3.4282 3.5609 0.0003 35 1 5.5259 5.0076 -0.8826 36 1 5.5194 5.0012 0.8974 37 1 6.0979 6.8091 0.0064 38 1 7.2124 9.0023 0.0295 39 1 9.6688 9.1385 0.0391 40 1 14.9735 7.0918 0.3502 41 1 9.9052 4.8693 0.0243 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842108721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:32 Heat of formation + Delta-G solvation = -88.802226 kcal Electronic energy + Delta-G solvation = -22079.141351 eV Core-core repulsion = 18538.990064 eV Total energy + Delta-G solvation = -3540.151287 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.18170 -39.27200 -37.98148 -36.50086 -35.58269 -34.04428 -32.25033 -30.57062 -29.47199 -28.66409 -27.53064 -25.33034 -23.79268 -21.90473 -21.79088 -21.43715 -20.37560 -18.32560 -17.95947 -16.92746 -16.53933 -16.33621 -15.94412 -15.46642 -15.21464 -14.87177 -14.58643 -14.26616 -14.09528 -13.83802 -13.67438 -13.34357 -13.11214 -12.82769 -12.60310 -12.34247 -12.03988 -11.67293 -11.63351 -11.60622 -11.59040 -11.11456 -11.04026 -10.99079 -10.62334 -10.39349 -10.36162 -9.91205 -9.42422 -9.36953 -8.82276 -7.73493 -7.27778 -6.44280 -4.03353 2.19627 2.30424 2.45610 2.53841 3.17725 3.18903 3.24544 3.78507 4.00841 4.33497 4.44633 4.48720 4.53925 4.64651 4.90153 4.97640 5.04231 5.06363 5.11044 5.17677 5.24986 5.30773 5.40784 5.51303 5.54759 5.63175 5.72211 5.76238 5.83071 6.09804 6.11841 6.25976 6.32962 6.64967 6.98973 7.08581 7.17252 7.19525 7.43040 7.54049 7.97543 8.01942 8.03973 9.01645 9.68040 10.73122 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021427 B = 0.002610 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.467047 B =10723.914661 C =11990.944250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.132 4.132 4 C 0.119 3.881 5 N -0.733 5.733 6 C 0.514 3.486 7 O -0.512 6.512 8 C 0.046 3.954 9 O -0.295 6.295 10 C 0.164 3.836 11 C -0.300 4.300 12 C -0.044 4.044 13 C -0.219 4.219 14 C 0.184 3.816 15 O -0.169 6.169 16 C -0.392 4.392 17 H 0.095 0.905 18 C 0.041 3.959 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.265 1.265 24 C -0.260 4.260 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.401 0.599 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.270 0.730 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.124 -7.757 -0.333 26.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.169 4.169 4 C -0.004 4.004 5 N -0.388 5.388 6 C 0.299 3.701 7 O -0.386 6.386 8 C -0.033 4.033 9 O -0.208 6.208 10 C 0.119 3.881 11 C -0.320 4.320 12 C -0.062 4.062 13 C -0.238 4.238 14 C 0.129 3.871 15 O -0.072 6.072 16 C -0.468 4.468 17 H 0.113 0.887 18 C -0.164 4.164 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.190 1.190 24 C -0.280 4.280 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.235 0.765 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.080 0.920 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -24.001 -8.373 -0.330 25.421 hybrid contribution -0.120 -0.275 0.067 0.308 sum -24.121 -8.648 -0.263 25.625 Atomic orbital electron populations 1.21766 0.95459 1.01863 1.01894 1.21441 0.96124 0.95837 1.02686 1.21835 0.93986 0.98230 1.02892 1.21388 0.93684 0.82591 1.02741 1.45829 1.06609 1.09149 1.77238 1.20290 0.82336 0.90939 0.76535 1.90768 1.55031 1.45967 1.46799 1.22281 0.82954 0.94437 1.03640 1.86118 1.17342 1.28109 1.89231 1.18672 0.91703 0.82668 0.95007 1.20599 0.98281 0.92423 1.20687 1.20387 0.93416 0.96206 0.96190 1.20172 0.92900 0.96767 1.14009 1.19024 0.84968 0.92120 0.91012 1.83994 1.11696 1.33861 1.77630 1.21412 0.89412 0.83949 1.52068 0.88724 1.25307 0.95671 0.99108 0.96310 1.70042 1.08779 1.25138 1.45615 0.85697 0.78937 0.80031 0.78773 1.19784 1.20233 1.18979 1.20333 0.91224 0.99112 1.17353 0.92660 0.92551 0.92664 0.91557 0.91556 0.91159 0.91168 0.91319 0.91322 0.76492 0.89249 0.89237 0.87143 0.86666 0.86287 0.91967 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.30 16 2 C -0.12 -0.61 5.93 -26.73 -0.16 -0.77 16 3 C -0.13 -0.67 5.33 -26.73 -0.14 -0.81 16 4 C 0.12 0.96 5.67 -4.04 -0.02 0.93 16 5 N -0.73 -6.33 5.56 -60.30 -0.33 -6.67 16 6 C 0.51 6.86 7.91 -10.98 -0.09 6.77 16 7 O -0.51 -9.48 16.50 -14.35 -0.24 -9.72 16 8 C 0.05 0.59 5.22 36.01 0.19 0.78 16 9 O -0.30 -5.60 9.67 -39.33 -0.38 -5.98 16 10 C 0.16 3.32 6.68 -39.24 -0.26 3.05 16 11 C -0.30 -5.17 9.04 -39.38 -0.36 -5.53 16 12 C -0.04 -0.77 10.03 -39.63 -0.40 -1.16 16 13 C -0.22 -4.65 9.99 -39.37 -0.39 -5.04 16 14 C 0.18 4.57 6.65 -39.13 -0.26 4.31 16 15 O -0.17 -4.91 9.76 0.08 0.00 -4.91 16 16 C -0.39 -11.28 9.49 30.89 0.29 -10.99 16 17 H 0.10 2.58 5.20 -52.48 -0.27 2.31 16 18 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 19 N -0.86 -25.49 13.67 55.48 0.76 -24.73 16 20 Si 0.94 21.23 29.55 -169.99 -5.02 16.21 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 C -0.26 -6.14 9.10 -39.25 -0.36 -6.49 16 25 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.40 2.06 8.47 -40.82 -0.35 1.72 16 35 H 0.09 0.92 7.65 -51.93 -0.40 0.52 16 36 H 0.09 0.93 7.67 -51.93 -0.40 0.53 16 37 H 0.11 1.46 6.29 -52.48 -0.33 1.13 16 38 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.14 3.35 5.64 -52.49 -0.30 3.05 16 LS Contribution 351.10 15.07 5.29 5.29 Total: -1.00 -35.12 351.10 -7.44 -42.56 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.83 Total: 2.15 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -1.68 Total: -14.20 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 0.42 Total: -31.39 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.62 Total: -20.61 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.12 -7.44 -42.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842108721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.247 kcal (2) G-P(sol) polarization free energy of solvation -35.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds