Wall clock time and date at job start Tue Mar 31 2020 07:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47452 * 2 1 4 4 C 1.52997 * 109.47205 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47168 * 180.02562 * 4 3 2 6 6 C 1.34776 * 120.00286 * 179.97438 * 5 4 3 7 7 O 1.21282 * 119.99600 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00243 * 180.27347 * 6 5 4 9 9 O 1.42898 * 109.46862 * 179.72780 * 8 6 5 10 10 C 1.35900 * 116.99824 * 180.02562 * 9 8 6 11 11 C 1.38826 * 120.02014 * 359.72611 * 10 9 8 12 12 C 1.38191 * 120.08341 * 179.71798 * 11 10 9 13 13 C 1.38157 * 120.12033 * 0.55637 * 12 11 10 14 14 C 1.38902 * 120.04056 * 359.71617 * 13 12 11 15 15 O 1.35743 * 120.04100 * 179.97438 * 14 13 12 16 16 C 1.34826 * 117.00194 * 174.48960 * 15 14 13 17 17 H 1.08003 * 119.99800 * 5.06088 * 16 15 14 18 18 C 1.38653 * 120.00448 * 185.05719 * 16 15 14 19 19 N 1.31557 * 119.99661 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00322 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47021 * 90.00009 * 20 18 16 22 22 H 1.48503 * 109.47039 * 210.00530 * 20 18 16 23 23 H 1.48502 * 109.46778 * 329.99837 * 20 18 16 24 24 C 1.38573 * 120.02041 * 179.97438 * 10 9 8 25 25 H 1.09001 * 109.46891 * 59.99715 * 1 2 3 26 26 H 1.08996 * 109.47629 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46894 * 300.00625 * 1 2 3 28 28 H 1.09001 * 109.46894 * 239.99375 * 2 1 3 29 29 H 1.09004 * 109.46476 * 119.99645 * 2 1 3 30 30 H 1.09000 * 109.47106 * 59.99559 * 3 2 1 31 31 H 1.09001 * 109.47305 * 300.00031 * 3 2 1 32 32 H 1.08994 * 109.47188 * 60.00131 * 4 3 2 33 33 H 1.08995 * 109.47181 * 299.99526 * 4 3 2 34 34 H 0.96999 * 120.00256 * 359.97438 * 5 4 3 35 35 H 1.09004 * 109.46920 * 299.72590 * 8 6 5 36 36 H 1.08998 * 109.46749 * 59.72534 * 8 6 5 37 37 H 1.08008 * 119.95975 * 359.97438 * 11 10 9 38 38 H 1.07992 * 119.94461 * 180.25083 * 12 11 10 39 39 H 1.07999 * 119.97948 * 179.70096 * 13 12 11 40 40 H 0.97004 * 120.00535 * 179.97438 * 19 18 16 41 41 H 1.07993 * 120.06181 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 5.3836 3.0698 0.0001 7 8 6.1716 2.1479 -0.0008 8 6 5.8860 4.4906 0.0069 9 8 7.3149 4.4905 0.0121 10 6 7.9320 5.7013 0.0192 11 6 7.1764 6.8659 0.0154 12 6 7.8024 8.0978 0.0284 13 6 9.1819 8.1745 0.0337 14 6 9.9429 7.0125 0.0319 15 8 11.2982 7.0878 0.0365 16 6 11.9754 5.9275 0.1498 17 1 11.4417 4.9885 0.1492 18 6 13.3569 5.9395 0.2668 19 7 14.0070 7.0832 0.2679 20 14 14.2952 4.3318 0.4230 21 1 14.6624 3.8396 -0.9291 22 1 15.5279 4.5535 1.2209 23 1 13.4410 3.3241 1.1015 24 6 9.3158 5.7742 0.0250 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6768 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9338 0.9285 0.8891 34 1 3.4282 3.5609 0.0003 35 1 5.5259 5.0076 -0.8826 36 1 5.5194 5.0012 0.8974 37 1 6.0979 6.8091 0.0064 38 1 7.2124 9.0023 0.0295 39 1 9.6688 9.1385 0.0391 40 1 14.9735 7.0918 0.3502 41 1 9.9052 4.8693 0.0243 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842108721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:32 Heat of formation + Delta-G solvation = -113.194715 kcal Electronic energy + Delta-G solvation = -22080.199089 eV Core-core repulsion = 18538.990064 eV Total energy + Delta-G solvation = -3541.209025 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.46891 -40.69305 -39.58109 -37.38658 -37.03923 -34.76370 -34.29916 -31.82888 -30.56308 -30.28067 -28.47895 -27.36537 -24.45062 -23.56255 -22.87890 -22.32503 -21.39919 -20.01208 -19.61121 -18.16691 -17.65640 -17.48785 -16.88189 -16.79523 -16.65605 -16.33441 -16.03271 -15.68698 -15.29644 -15.18258 -14.64008 -14.50884 -14.24406 -14.21913 -13.98538 -13.46018 -13.28163 -13.12755 -12.72591 -12.61315 -12.47825 -12.24510 -12.14602 -12.06692 -11.97638 -11.81486 -11.50545 -11.42816 -10.97561 -10.81366 -10.22318 -9.40643 -8.96586 -8.51165 -6.19781 0.57353 0.67189 1.32279 1.40929 1.43699 1.49381 1.53868 2.15408 2.65683 2.78585 3.12436 3.48967 3.61170 3.85706 4.00392 4.00694 4.12232 4.15155 4.18323 4.29573 4.43289 4.45191 4.57433 4.63477 4.66982 4.80037 4.92380 4.93979 5.02485 5.05154 5.08884 5.25789 5.34531 5.36051 5.39951 5.47174 5.60807 5.65577 5.90969 6.00216 6.38082 6.56364 6.93670 7.13017 7.70700 8.71202 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021427 B = 0.002610 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.467047 B =10723.914661 C =11990.944250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.119 4.119 4 C 0.116 3.884 5 N -0.707 5.707 6 C 0.511 3.489 7 O -0.577 6.577 8 C 0.035 3.965 9 O -0.325 6.325 10 C 0.165 3.835 11 C -0.267 4.267 12 C -0.025 4.025 13 C -0.234 4.234 14 C 0.149 3.851 15 O -0.222 6.222 16 C -0.416 4.416 17 H 0.093 0.907 18 C -0.017 4.017 19 N -0.914 5.914 20 Si 1.015 2.985 21 H -0.262 1.262 22 H -0.263 1.263 23 H -0.262 1.262 24 C -0.288 4.288 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.423 0.577 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.171 0.829 38 H 0.171 0.829 39 H 0.121 0.879 40 H 0.275 0.725 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.573 -7.273 -0.297 30.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.007 4.007 5 N -0.362 5.362 6 C 0.297 3.703 7 O -0.456 6.456 8 C -0.042 4.042 9 O -0.239 6.239 10 C 0.120 3.880 11 C -0.286 4.286 12 C -0.043 4.043 13 C -0.254 4.254 14 C 0.098 3.902 15 O -0.128 6.128 16 C -0.492 4.492 17 H 0.110 0.890 18 C -0.215 4.215 19 N -0.551 5.551 20 Si 0.834 3.166 21 H -0.186 1.186 22 H -0.187 1.187 23 H -0.186 1.186 24 C -0.308 4.308 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.261 0.739 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.188 0.812 38 H 0.188 0.812 39 H 0.139 0.861 40 H 0.084 0.916 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -28.580 -7.864 -0.299 29.643 hybrid contribution 0.767 -0.418 0.040 0.874 sum -27.812 -8.282 -0.259 29.020 Atomic orbital electron populations 1.21751 0.94678 1.02076 1.02314 1.21460 0.96752 0.95818 1.02329 1.21765 0.91255 0.98507 1.04152 1.21471 0.95794 0.81952 1.01493 1.45658 1.05416 1.10306 1.74821 1.20564 0.83244 0.90675 0.75798 1.90756 1.56910 1.47702 1.50251 1.22781 0.79622 0.94759 1.07056 1.86083 1.21142 1.27734 1.88931 1.18693 0.90646 0.84464 0.94237 1.21258 1.00999 0.90580 1.15785 1.21008 0.91802 0.98637 0.92811 1.20524 0.94765 0.95621 1.14445 1.19606 0.84136 0.94054 0.92453 1.83947 1.13863 1.34050 1.80931 1.21734 0.90249 0.84279 1.52977 0.88994 1.26502 0.96194 1.03115 0.95695 1.70157 1.09223 1.27574 1.48161 0.84653 0.77524 0.75142 0.79304 1.18633 1.18750 1.18610 1.20315 0.93409 0.97738 1.19347 0.92209 0.92548 0.92223 0.92002 0.92016 0.89837 0.89831 0.92682 0.92712 0.73912 0.85504 0.85537 0.81212 0.81192 0.86078 0.91604 0.87528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 71.98 0.71 -0.27 16 2 C -0.13 -1.03 5.93 30.59 0.18 -0.85 16 3 C -0.12 -0.86 5.33 30.59 0.16 -0.70 16 4 C 0.12 1.67 5.67 86.38 0.49 2.16 16 5 N -0.71 -10.00 5.56 -463.07 -2.57 -12.57 16 6 C 0.51 12.53 7.91 87.66 0.69 13.23 16 7 O -0.58 -21.52 16.50 16.00 0.26 -21.26 16 8 C 0.04 0.76 5.22 71.24 0.37 1.13 16 9 O -0.33 -11.82 9.67 -73.38 -0.71 -12.53 16 10 C 0.16 6.36 6.68 22.49 0.15 6.51 16 11 C -0.27 -7.73 9.04 22.40 0.20 -7.53 16 12 C -0.02 -0.75 10.03 22.24 0.22 -0.53 16 13 C -0.23 -9.78 9.99 22.41 0.22 -9.55 16 14 C 0.15 7.72 6.65 22.56 0.15 7.87 16 15 O -0.22 -13.84 9.76 -22.62 -0.22 -14.06 16 16 C -0.42 -25.71 9.49 67.92 0.64 -25.06 16 17 H 0.09 5.48 5.20 -2.91 -0.02 5.46 16 18 C -0.02 -0.99 5.49 84.83 0.47 -0.53 16 19 N -0.91 -57.13 13.67 21.61 0.30 -56.84 16 20 Si 1.01 45.59 29.55 68.60 2.03 47.62 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 24 C -0.29 -14.12 9.10 22.49 0.20 -13.92 16 25 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.42 2.29 8.47 -92.71 -0.79 1.51 16 35 H 0.13 1.80 7.65 -2.38 -0.02 1.78 16 36 H 0.13 1.80 7.67 -2.39 -0.02 1.78 16 37 H 0.17 2.96 6.29 -2.91 -0.02 2.94 16 38 H 0.17 3.42 8.06 -2.91 -0.02 3.39 16 39 H 0.12 4.90 8.06 -2.91 -0.02 4.87 16 40 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 41 H 0.11 5.72 5.64 -2.91 -0.02 5.71 16 Total: -1.00 -86.30 351.10 4.22 -82.08 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.26 Total: 15.58 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 4.88 Total: -28.03 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -2.28 Total: -69.41 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -0.67 Total: -47.84 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -86.30 4.22 -82.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842108721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.110 kcal (2) G-P(sol) polarization free energy of solvation -86.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds