Wall clock time and date at job start Tue Mar 31 2020 07:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46823 * 2 1 4 4 C 1.52998 * 109.47167 * 119.99511 * 2 1 3 5 5 N 1.46510 * 109.46950 * 65.00364 * 4 2 1 6 6 C 1.34776 * 120.00084 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99751 * 0.02562 * 6 5 4 8 8 C 1.50692 * 119.99955 * 180.02562 * 6 5 4 9 9 O 1.42898 * 109.47083 * 180.02562 * 8 6 5 10 10 C 1.35902 * 116.99948 * 179.97438 * 9 8 6 11 11 C 1.38831 * 120.02368 * 0.02618 * 10 9 8 12 12 C 1.38182 * 120.08190 * 179.97438 * 11 10 9 13 13 C 1.38150 * 120.12616 * 359.76607 * 12 11 10 14 14 C 1.38898 * 120.03893 * 0.50689 * 13 12 11 15 15 O 1.35751 * 120.03862 * 179.74507 * 14 13 12 16 16 C 1.34829 * 116.99660 * 174.18943 * 15 14 13 17 17 H 1.08001 * 120.00139 * 5.05352 * 16 15 14 18 18 C 1.38657 * 119.99856 * 185.05736 * 16 15 14 19 19 N 1.31554 * 119.99932 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00075 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46981 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47233 * 119.99508 * 20 18 16 23 23 H 1.48493 * 109.47365 * 239.99909 * 20 18 16 24 24 C 1.38575 * 120.01962 * 179.97438 * 10 9 8 25 25 H 1.09008 * 109.46495 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47373 * 299.99698 * 1 2 3 27 27 H 1.08998 * 109.47254 * 60.00278 * 1 2 3 28 28 H 1.09000 * 109.47373 * 240.00301 * 2 1 3 29 29 H 1.08999 * 109.47009 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46979 * 299.99890 * 3 2 1 31 31 H 1.09008 * 109.46749 * 59.99741 * 3 2 1 32 32 H 1.09005 * 109.47707 * 305.00779 * 4 2 1 33 33 H 1.08997 * 109.47310 * 184.99903 * 4 2 1 34 34 H 0.96998 * 119.99831 * 0.02562 * 5 4 2 35 35 H 1.09006 * 109.47474 * 60.00123 * 8 6 5 36 36 H 1.08996 * 109.47270 * 300.00466 * 8 6 5 37 37 H 1.08006 * 119.95329 * 359.97228 * 11 10 9 38 38 H 1.08002 * 119.93383 * 180.02562 * 12 11 10 39 39 H 1.08006 * 119.98231 * 180.25958 * 13 12 11 40 40 H 0.96998 * 119.99974 * 180.02562 * 19 18 16 41 41 H 1.07991 * 120.05985 * 0.04906 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6525 -2.1328 1.1906 6 6 1.9965 -2.9682 2.1908 7 8 2.6264 -2.5512 3.1395 8 6 1.5984 -4.4203 2.1302 9 8 2.0746 -5.0939 3.2970 10 6 1.7977 -6.4204 3.3998 11 6 1.0824 -7.0605 2.3969 12 6 0.8007 -8.4094 2.4999 13 6 1.2339 -9.1263 3.5985 14 6 1.9451 -8.4898 4.6077 15 8 2.3664 -9.1931 5.6897 16 6 3.1530 -8.5452 6.5725 17 1 3.3537 -7.4917 6.4452 18 6 3.7043 -9.2315 7.6438 19 7 3.4594 -10.5147 7.7990 20 14 4.7935 -8.3338 8.8673 21 1 4.9101 -6.9070 8.4723 22 1 4.1940 -8.4240 10.2229 23 1 6.1416 -8.9562 8.8798 24 6 2.2303 -7.1353 4.5054 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6053 -0.2617 2.1371 33 1 3.1263 -0.6442 1.2952 34 1 1.1490 -2.4664 0.4316 35 1 2.0331 -4.8796 1.2423 36 1 0.5121 -4.4976 2.0843 37 1 0.7456 -6.5034 1.5350 38 1 0.2444 -8.9050 1.7181 39 1 1.0161 -10.1814 3.6747 40 1 3.8448 -10.9948 8.5487 41 1 2.7869 -6.6390 5.2865 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842109011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:34 Heat of formation + Delta-G solvation = -85.974904 kcal Electronic energy + Delta-G solvation = -22371.984006 eV Core-core repulsion = 18831.955321 eV Total energy + Delta-G solvation = -3540.028685 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.21310 -39.31168 -38.02465 -36.90993 -35.58653 -33.59409 -32.25076 -30.29093 -28.72660 -28.40149 -27.66274 -25.79551 -25.32866 -21.90818 -21.53252 -20.97506 -20.32049 -18.32686 -17.95677 -16.99852 -16.49880 -16.33175 -15.65686 -15.39972 -15.21605 -14.93066 -14.37628 -14.27329 -14.11676 -13.76833 -13.54818 -13.27125 -13.10533 -12.78279 -12.60469 -12.50923 -12.34412 -11.71170 -11.62405 -11.59773 -11.39908 -11.20431 -11.05908 -10.98947 -10.60910 -10.38605 -10.35559 -9.91132 -9.42042 -9.35331 -8.82850 -7.73490 -7.27811 -6.44489 -4.03480 2.19620 2.30313 2.46453 2.55247 3.16822 3.19212 3.25674 3.79818 4.00826 4.26082 4.39672 4.52572 4.53941 4.58385 4.97755 5.03008 5.05262 5.10656 5.15918 5.22619 5.25095 5.34708 5.40107 5.48808 5.52058 5.63357 5.72181 5.77280 5.82715 6.10091 6.13296 6.26087 6.32975 6.64973 6.99014 7.08835 7.17832 7.19525 7.43207 7.54068 7.97746 8.02053 8.04547 9.01633 9.68074 10.73061 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021022 B = 0.002829 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.591566 B = 9894.492746 C =11121.298486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.146 4.146 4 C 0.124 3.876 5 N -0.732 5.732 6 C 0.514 3.486 7 O -0.512 6.512 8 C 0.046 3.954 9 O -0.295 6.295 10 C 0.164 3.836 11 C -0.300 4.300 12 C -0.044 4.044 13 C -0.219 4.219 14 C 0.184 3.816 15 O -0.170 6.170 16 C -0.392 4.392 17 H 0.096 0.904 18 C 0.040 3.960 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.264 1.264 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.260 4.260 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.400 0.600 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.270 0.730 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.852 18.039 -17.551 25.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.127 4.127 3 C -0.204 4.204 4 C 0.001 3.999 5 N -0.387 5.387 6 C 0.299 3.701 7 O -0.386 6.386 8 C -0.033 4.033 9 O -0.208 6.208 10 C 0.120 3.880 11 C -0.320 4.320 12 C -0.062 4.062 13 C -0.238 4.238 14 C 0.129 3.871 15 O -0.072 6.072 16 C -0.468 4.468 17 H 0.113 0.887 18 C -0.164 4.164 19 N -0.496 5.496 20 Si 0.765 3.235 21 H -0.188 1.188 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.280 4.280 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.235 0.765 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.080 0.920 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.238 18.044 -16.429 24.958 hybrid contribution 0.134 0.264 -0.039 0.299 sum -5.104 18.307 -16.467 25.147 Atomic orbital electron populations 1.21888 0.94582 1.02024 1.02271 1.21367 0.96554 0.97034 0.97772 1.21769 1.01373 0.94867 1.02343 1.21452 1.00311 0.79893 0.98259 1.45842 1.59147 1.09817 1.23889 1.20274 0.79759 0.87491 0.82570 1.90767 1.37895 1.77453 1.32462 1.22279 1.00555 0.90241 0.90251 1.86120 1.74219 1.20418 1.40030 1.18674 0.94078 0.80909 0.94386 1.20599 1.13151 0.96685 1.01543 1.20384 0.96679 0.92966 0.96170 1.20173 1.08174 1.00233 0.95258 1.19025 0.91408 0.89319 0.87371 1.83998 1.57900 1.38053 1.27255 1.21467 1.26266 0.94924 1.04148 0.88664 1.25308 0.97591 0.95785 0.97722 1.70049 1.42038 1.07678 1.29828 0.85636 0.79048 0.79370 0.79417 1.18827 1.20095 1.20083 1.20336 1.12883 0.94205 1.00592 0.92545 0.92271 0.92307 0.90433 0.92239 0.92091 0.92221 0.91249 0.91291 0.76515 0.89261 0.89280 0.87149 0.86669 0.86287 0.92014 0.84592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.07 37.16 0.34 -0.39 16 2 C -0.11 -0.57 2.96 -90.62 -0.27 -0.84 16 3 C -0.15 -0.70 9.19 37.16 0.34 -0.36 16 4 C 0.12 1.01 5.06 -4.04 -0.02 0.99 16 5 N -0.73 -6.35 5.28 -60.29 -0.32 -6.67 16 6 C 0.51 6.85 7.91 -10.99 -0.09 6.77 16 7 O -0.51 -9.47 16.50 -14.35 -0.24 -9.71 16 8 C 0.05 0.59 5.22 36.00 0.19 0.78 16 9 O -0.29 -5.61 9.67 -39.34 -0.38 -5.99 16 10 C 0.16 3.32 6.68 -39.24 -0.26 3.05 16 11 C -0.30 -5.17 9.04 -39.38 -0.36 -5.53 16 12 C -0.04 -0.77 10.03 -39.63 -0.40 -1.16 16 13 C -0.22 -4.65 9.99 -39.37 -0.39 -5.04 16 14 C 0.18 4.57 6.65 -39.13 -0.26 4.31 16 15 O -0.17 -4.91 9.76 0.05 0.00 -4.91 16 16 C -0.39 -11.27 9.49 30.89 0.29 -10.98 16 17 H 0.10 2.61 5.20 -52.49 -0.27 2.33 16 18 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 19 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 20 Si 0.94 21.23 29.55 -169.99 -5.02 16.21 16 21 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 C -0.26 -6.14 9.10 -39.25 -0.36 -6.49 16 25 H 0.06 0.25 7.18 -51.92 -0.37 -0.12 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.40 2.16 7.66 -40.82 -0.31 1.85 16 35 H 0.09 0.93 7.66 -51.93 -0.40 0.53 16 36 H 0.09 0.92 7.66 -51.93 -0.40 0.52 16 37 H 0.11 1.46 6.29 -52.48 -0.33 1.13 16 38 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.14 3.36 5.64 -52.49 -0.30 3.06 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -35.03 348.48 -7.03 -42.06 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.74 Total: 2.36 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -1.34 Total: -13.86 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: 0.44 Total: -31.42 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.62 Total: -20.61 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.03 -7.03 -42.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842109011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.911 kcal (2) G-P(sol) polarization free energy of solvation -35.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds