Wall clock time and date at job start Tue Mar 31 2020 07:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46823 * 2 1 4 4 C 1.52998 * 109.47167 * 119.99511 * 2 1 3 5 5 N 1.46510 * 109.46950 * 65.00364 * 4 2 1 6 6 C 1.34776 * 120.00084 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99751 * 0.02562 * 6 5 4 8 8 C 1.50692 * 119.99955 * 180.02562 * 6 5 4 9 9 O 1.42898 * 109.47083 * 180.02562 * 8 6 5 10 10 C 1.35902 * 116.99948 * 179.97438 * 9 8 6 11 11 C 1.38831 * 120.02368 * 0.02618 * 10 9 8 12 12 C 1.38182 * 120.08190 * 179.97438 * 11 10 9 13 13 C 1.38150 * 120.12616 * 359.76607 * 12 11 10 14 14 C 1.38898 * 120.03893 * 0.50689 * 13 12 11 15 15 O 1.35751 * 120.03862 * 179.74507 * 14 13 12 16 16 C 1.34829 * 116.99660 * 174.18943 * 15 14 13 17 17 H 1.08001 * 120.00139 * 5.05352 * 16 15 14 18 18 C 1.38657 * 119.99856 * 185.05736 * 16 15 14 19 19 N 1.31554 * 119.99932 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00075 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.46981 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47233 * 119.99508 * 20 18 16 23 23 H 1.48493 * 109.47365 * 239.99909 * 20 18 16 24 24 C 1.38575 * 120.01962 * 179.97438 * 10 9 8 25 25 H 1.09008 * 109.46495 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47373 * 299.99698 * 1 2 3 27 27 H 1.08998 * 109.47254 * 60.00278 * 1 2 3 28 28 H 1.09000 * 109.47373 * 240.00301 * 2 1 3 29 29 H 1.08999 * 109.47009 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.46979 * 299.99890 * 3 2 1 31 31 H 1.09008 * 109.46749 * 59.99741 * 3 2 1 32 32 H 1.09005 * 109.47707 * 305.00779 * 4 2 1 33 33 H 1.08997 * 109.47310 * 184.99903 * 4 2 1 34 34 H 0.96998 * 119.99831 * 0.02562 * 5 4 2 35 35 H 1.09006 * 109.47474 * 60.00123 * 8 6 5 36 36 H 1.08996 * 109.47270 * 300.00466 * 8 6 5 37 37 H 1.08006 * 119.95329 * 359.97228 * 11 10 9 38 38 H 1.08002 * 119.93383 * 180.02562 * 12 11 10 39 39 H 1.08006 * 119.98231 * 180.25958 * 13 12 11 40 40 H 0.96998 * 119.99974 * 180.02562 * 19 18 16 41 41 H 1.07991 * 120.05985 * 0.04906 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6525 -2.1328 1.1906 6 6 1.9965 -2.9682 2.1908 7 8 2.6264 -2.5512 3.1395 8 6 1.5984 -4.4203 2.1302 9 8 2.0746 -5.0939 3.2970 10 6 1.7977 -6.4204 3.3998 11 6 1.0824 -7.0605 2.3969 12 6 0.8007 -8.4094 2.4999 13 6 1.2339 -9.1263 3.5985 14 6 1.9451 -8.4898 4.6077 15 8 2.3664 -9.1931 5.6897 16 6 3.1530 -8.5452 6.5725 17 1 3.3537 -7.4917 6.4452 18 6 3.7043 -9.2315 7.6438 19 7 3.4594 -10.5147 7.7990 20 14 4.7935 -8.3338 8.8673 21 1 4.9101 -6.9070 8.4723 22 1 4.1940 -8.4240 10.2229 23 1 6.1416 -8.9562 8.8798 24 6 2.2303 -7.1353 4.5054 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.6053 -0.2617 2.1371 33 1 3.1263 -0.6442 1.2952 34 1 1.1490 -2.4664 0.4316 35 1 2.0331 -4.8796 1.2423 36 1 0.5121 -4.4976 2.0843 37 1 0.7456 -6.5034 1.5350 38 1 0.2444 -8.9050 1.7181 39 1 1.0161 -10.1814 3.6747 40 1 3.8448 -10.9948 8.5487 41 1 2.7869 -6.6390 5.2865 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842109011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:34 Heat of formation + Delta-G solvation = -110.309271 kcal Electronic energy + Delta-G solvation = -22373.039224 eV Core-core repulsion = 18831.955321 eV Total energy + Delta-G solvation = -3541.083903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.48052 -40.72567 -39.60958 -37.70859 -37.18138 -34.39969 -34.30120 -31.71746 -30.37336 -29.61338 -28.04082 -27.36859 -26.58217 -23.57010 -22.99955 -21.78180 -21.17925 -19.99943 -19.61289 -18.17632 -17.71424 -17.44081 -16.94178 -16.79756 -16.52026 -16.18574 -16.02832 -15.60008 -15.29998 -15.11222 -14.65968 -14.47620 -14.22373 -13.99647 -13.92579 -13.46124 -13.37604 -13.09944 -12.91772 -12.71847 -12.61154 -12.21164 -12.12022 -12.02561 -11.86807 -11.81829 -11.64757 -11.42837 -10.98857 -10.81786 -10.21834 -9.40784 -8.96680 -8.51570 -6.20071 0.57266 0.67001 1.32367 1.39864 1.44071 1.50351 1.54080 2.15263 2.66047 2.78393 3.12206 3.48953 3.61274 3.77577 3.93711 4.00366 4.11205 4.12635 4.14784 4.29381 4.45105 4.57386 4.57540 4.65988 4.76046 4.80502 4.84083 5.00332 5.02392 5.04035 5.09004 5.22744 5.26866 5.39652 5.40688 5.47283 5.60735 5.65534 5.90887 6.00223 6.37479 6.56004 6.93543 7.12630 7.70608 8.71153 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021022 B = 0.002829 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.591566 B = 9894.492746 C =11121.298486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.147 4.147 4 C 0.121 3.879 5 N -0.705 5.705 6 C 0.512 3.488 7 O -0.577 6.577 8 C 0.035 3.965 9 O -0.325 6.325 10 C 0.165 3.835 11 C -0.267 4.267 12 C -0.025 4.025 13 C -0.234 4.234 14 C 0.149 3.851 15 O -0.222 6.222 16 C -0.416 4.416 17 H 0.093 0.907 18 C -0.017 4.017 19 N -0.914 5.914 20 Si 1.015 2.985 21 H -0.262 1.262 22 H -0.263 1.263 23 H -0.263 1.263 24 C -0.288 4.288 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.421 0.579 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.170 0.830 38 H 0.171 0.829 39 H 0.121 0.879 40 H 0.275 0.725 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.434 19.678 -21.433 30.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.002 4.002 5 N -0.360 5.360 6 C 0.298 3.702 7 O -0.456 6.456 8 C -0.042 4.042 9 O -0.239 6.239 10 C 0.120 3.880 11 C -0.286 4.286 12 C -0.042 4.042 13 C -0.253 4.253 14 C 0.098 3.902 15 O -0.128 6.128 16 C -0.492 4.492 17 H 0.110 0.890 18 C -0.215 4.215 19 N -0.552 5.552 20 Si 0.834 3.166 21 H -0.186 1.186 22 H -0.187 1.187 23 H -0.187 1.187 24 C -0.308 4.308 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.259 0.741 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.188 0.812 38 H 0.188 0.812 39 H 0.139 0.861 40 H 0.084 0.916 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.875 19.722 -20.421 29.211 hybrid contribution 0.444 -0.017 0.767 0.887 sum -6.431 19.705 -19.654 28.564 Atomic orbital electron populations 1.21903 0.93911 1.02551 1.02428 1.21319 0.96960 0.96886 0.96497 1.21792 1.01273 0.94713 1.02734 1.21542 0.99638 0.79645 0.99408 1.45666 1.57684 1.09527 1.23165 1.20541 0.79022 0.88209 0.82451 1.90756 1.41131 1.78520 1.35167 1.22777 1.02924 0.89306 0.89229 1.86085 1.74758 1.19784 1.43245 1.18695 0.93775 0.81689 0.93869 1.21257 1.09289 0.96645 1.01432 1.21005 0.94807 0.93055 0.95381 1.20523 1.08158 1.00927 0.95720 1.19606 0.92732 0.90131 0.87775 1.83952 1.60139 1.39471 1.29216 1.21777 1.27178 0.95132 1.05100 0.89002 1.26499 0.98883 0.96694 0.99406 1.70161 1.44312 1.09438 1.31272 0.84592 0.77263 0.77925 0.76818 1.18591 1.18743 1.18723 1.20314 1.14176 0.94385 1.01930 0.91823 0.93235 0.91106 0.88944 0.92506 0.90786 0.92767 0.92746 0.92571 0.74063 0.85553 0.85558 0.81230 0.81188 0.86069 0.91595 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.07 71.98 0.65 -0.34 16 2 C -0.10 -0.77 2.96 -10.79 -0.03 -0.80 16 3 C -0.15 -1.15 9.19 71.98 0.66 -0.49 16 4 C 0.12 1.79 5.06 86.38 0.44 2.23 16 5 N -0.71 -10.18 5.28 -463.05 -2.45 -12.62 16 6 C 0.51 12.59 7.91 87.65 0.69 13.28 16 7 O -0.58 -21.52 16.50 16.01 0.26 -21.26 16 8 C 0.04 0.76 5.22 71.23 0.37 1.13 16 9 O -0.33 -11.84 9.67 -73.41 -0.71 -12.54 16 10 C 0.16 6.37 6.68 22.49 0.15 6.52 16 11 C -0.27 -7.74 9.04 22.40 0.20 -7.54 16 12 C -0.02 -0.75 10.03 22.24 0.22 -0.53 16 13 C -0.23 -9.76 9.99 22.41 0.22 -9.54 16 14 C 0.15 7.73 6.65 22.56 0.15 7.88 16 15 O -0.22 -13.82 9.76 -22.73 -0.22 -14.04 16 16 C -0.42 -25.69 9.49 67.92 0.64 -25.04 16 17 H 0.09 5.49 5.20 -2.91 -0.02 5.47 16 18 C -0.02 -0.98 5.49 84.83 0.47 -0.52 16 19 N -0.91 -57.19 13.67 21.61 0.30 -56.90 16 20 Si 1.01 45.62 29.55 68.60 2.03 47.65 16 21 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 22 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 23 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 24 C -0.29 -14.13 9.10 22.49 0.20 -13.93 16 25 H 0.06 0.32 7.18 -2.38 -0.02 0.31 16 26 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.42 2.59 7.66 -92.71 -0.71 1.88 16 35 H 0.13 1.82 7.66 -2.38 -0.02 1.80 16 36 H 0.13 1.81 7.66 -2.39 -0.02 1.79 16 37 H 0.17 2.96 6.29 -2.91 -0.02 2.95 16 38 H 0.17 3.42 8.06 -2.91 -0.02 3.39 16 39 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 40 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 41 H 0.11 5.72 5.64 -2.92 -0.02 5.71 16 Total: -1.00 -86.10 348.48 4.59 -81.51 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.33 Total: 15.89 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 5.05 Total: -27.68 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -2.15 Total: -69.52 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -0.67 Total: -47.84 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -86.10 4.59 -81.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842109011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.804 kcal (2) G-P(sol) polarization free energy of solvation -86.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds