Wall clock time and date at job start Tue Mar 31 2020 07:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35748 * 116.99488 * 2 1 4 4 C 1.39203 * 120.81876 * 0.02562 * 3 2 1 5 5 C 1.38332 * 119.29700 * 179.97438 * 4 3 2 6 6 N 1.31596 * 120.97962 * 0.02562 * 5 4 3 7 7 C 1.32832 * 121.77339 * 359.69859 * 6 5 4 8 8 C 1.48081 * 119.70374 * 180.29595 * 7 6 5 9 9 O 1.21428 * 120.00644 * 180.28996 * 8 7 6 10 10 O 1.34685 * 119.99939 * 0.28845 * 8 7 6 11 11 C 1.45193 * 117.00078 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47186 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.46970 * 299.99748 * 12 11 10 14 14 C 1.53001 * 109.47378 * 59.99746 * 12 11 10 15 15 C 1.53001 * 109.47496 * 180.02562 * 12 11 10 16 16 C 1.50698 * 109.47358 * 180.02562 * 15 12 11 17 17 H 1.07997 * 120.00115 * 359.97438 * 16 15 12 18 18 C 1.37878 * 119.99895 * 179.97438 * 16 15 12 19 19 N 1.31511 * 119.99991 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99894 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47127 * 89.99678 * 20 18 16 22 22 H 1.48498 * 109.47141 * 209.99912 * 20 18 16 23 23 H 1.48501 * 109.46787 * 329.99855 * 20 18 16 24 24 C 1.39143 * 120.59894 * 0.58798 * 7 6 5 25 25 H 1.08999 * 109.47272 * 59.99790 * 1 2 3 26 26 H 1.08997 * 109.46873 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47168 * 299.99860 * 1 2 3 28 28 H 1.08004 * 120.35249 * 359.95564 * 4 3 2 29 29 H 1.08003 * 119.51333 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47076 * 300.00101 * 11 10 8 31 31 H 1.09000 * 109.47332 * 59.99892 * 11 10 8 32 32 H 1.08999 * 109.47385 * 60.00049 * 13 12 11 33 33 H 1.08999 * 109.47468 * 179.97438 * 13 12 11 34 34 H 1.09000 * 109.47090 * 299.99975 * 13 12 11 35 35 H 1.09001 * 109.46847 * 60.00069 * 14 12 11 36 36 H 1.08999 * 109.47175 * 180.02562 * 14 12 11 37 37 H 1.09007 * 109.46757 * 300.00172 * 14 12 11 38 38 H 1.09001 * 109.46825 * 299.99991 * 15 12 11 39 39 H 1.09000 * 109.47273 * 59.99592 * 15 12 11 40 40 H 0.97006 * 119.99715 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.51524 * 179.70875 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 1.3037 2.3877 0.0005 5 6 1.9641 3.6032 0.0011 6 7 3.2789 3.6597 0.0006 7 6 4.0262 2.5616 0.0055 8 6 5.5024 2.6786 0.0113 9 8 6.1909 1.6784 0.0105 10 8 6.0815 3.8946 0.0175 11 6 7.5329 3.9335 0.0224 12 6 8.0040 5.3891 0.0297 13 6 7.4790 6.1013 -1.2185 14 6 7.4708 6.0916 1.2799 15 6 9.5335 5.4302 0.0342 16 6 9.9975 6.8639 0.0420 17 1 9.2740 7.6657 0.0432 18 6 11.3459 7.1521 0.0477 19 7 12.2269 6.1757 0.0468 20 14 11.9211 8.9293 0.0567 21 1 12.0687 9.3947 1.4591 22 1 13.2294 9.0297 -0.6386 23 1 10.9222 9.7763 -0.6434 24 6 3.4346 1.3022 -0.0009 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2242 2.3531 0.0002 29 1 1.3923 4.5194 0.0011 30 1 7.9069 3.4264 0.9118 31 1 7.9128 3.4327 -0.8681 32 1 6.3894 6.0722 -1.2223 33 1 7.8143 7.1385 -1.2131 34 1 7.8589 5.6009 -2.1092 35 1 7.8448 5.5841 2.1692 36 1 7.8061 7.1287 1.2849 37 1 6.3811 6.0623 1.2762 38 1 9.9079 4.9226 0.9232 39 1 9.9130 4.9299 -0.8567 40 1 13.1755 6.3785 0.0511 41 1 4.0436 0.4102 -0.0016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842786186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:01 Heat of formation + Delta-G solvation = -98.222847 kcal Electronic energy + Delta-G solvation = -22924.510242 eV Core-core repulsion = 19383.950446 eV Total energy + Delta-G solvation = -3540.559796 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.17949 -40.01407 -38.55068 -37.12301 -35.35886 -32.32178 -32.02827 -31.85103 -28.20707 -27.32752 -26.51146 -26.31388 -24.68430 -23.76155 -22.84886 -21.10739 -18.97766 -18.13986 -17.82095 -16.62006 -16.45342 -16.35419 -16.08221 -16.05139 -15.89666 -14.98201 -14.50335 -14.22558 -14.17340 -13.61536 -13.42507 -13.07377 -12.89072 -12.32095 -12.27946 -12.08010 -12.00906 -11.79745 -11.19830 -10.91029 -10.81624 -10.72088 -10.52546 -10.29178 -10.24167 -10.16046 -9.90746 -9.70921 -9.63592 -9.34604 -9.15714 -8.89564 -8.32728 -5.97009 -3.97667 0.22211 0.90675 2.36371 2.39390 2.94808 3.34583 3.41078 3.44044 3.54324 4.00174 4.16092 4.38247 4.48840 4.57680 4.59848 4.66885 4.92993 4.96212 5.19582 5.37240 5.38769 5.53852 5.56224 5.57064 5.87421 5.94443 6.11721 6.26659 6.46933 6.62560 6.63695 6.66749 6.80114 6.82681 7.18788 7.20294 7.20932 7.45710 7.65678 7.77894 7.93295 8.02127 8.44397 9.06697 9.65099 11.14694 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.044282 B = 0.002719 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.164668 B =10296.933788 C =10727.422761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.307 6.307 3 C 0.160 3.840 4 C -0.239 4.239 5 C 0.135 3.865 6 N -0.453 5.453 7 C 0.136 3.864 8 C 0.516 3.484 9 O -0.499 6.499 10 O -0.321 6.321 11 C 0.075 3.925 12 C -0.057 4.057 13 C -0.127 4.127 14 C -0.126 4.126 15 C 0.034 3.966 16 C -0.507 4.507 17 H 0.061 0.939 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.274 1.274 24 C -0.141 4.141 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.060 0.940 28 H 0.146 0.854 29 H 0.169 0.831 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.260 0.740 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.813 -9.686 -0.100 27.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.107 3.893 4 C -0.260 4.260 5 C -0.025 4.025 6 N -0.167 5.167 7 C 0.001 3.999 8 C 0.358 3.642 9 O -0.388 6.388 10 O -0.235 6.235 11 C 0.002 3.998 12 C -0.057 4.057 13 C -0.184 4.184 14 C -0.184 4.184 15 C -0.003 4.003 16 C -0.546 4.546 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.199 1.199 24 C -0.163 4.163 25 H 0.079 0.921 26 H 0.124 0.876 27 H 0.079 0.921 28 H 0.163 0.837 29 H 0.186 0.814 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -24.845 -9.423 -0.108 26.572 hybrid contribution -0.143 0.070 0.015 0.160 sum -24.987 -9.352 -0.093 26.680 Atomic orbital electron populations 1.23193 0.77392 1.04691 1.01806 1.86103 1.22134 1.25779 1.87801 1.19097 0.91888 0.84977 0.93351 1.22503 1.01957 0.93204 1.08331 1.22721 0.89602 0.97323 0.92818 1.67798 1.06960 1.30766 1.11222 1.19964 0.91762 0.88753 0.99469 1.20613 0.87375 0.82634 0.73556 1.90852 1.63967 1.38351 1.45585 1.86665 1.25716 1.29345 1.81812 1.23635 0.73608 1.00464 1.02074 1.20799 0.99229 0.89424 0.96235 1.21719 0.98796 1.01482 0.96377 1.21720 0.98777 1.01507 0.96367 1.19137 0.85901 0.97773 0.97461 1.21159 0.91390 0.91954 1.50067 0.92044 1.25019 0.97019 0.96984 0.95575 1.69969 1.01352 1.31217 1.51024 0.86611 0.78104 0.85364 0.78036 1.20760 1.21372 1.19863 1.21362 0.92294 0.99354 1.03244 0.92127 0.87597 0.92118 0.83659 0.81389 0.91392 0.91385 0.93885 0.91619 0.93863 0.93861 0.91624 0.93881 0.96335 0.96323 0.93063 0.82422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.84 101.05 0.99 1.09 16 2 O -0.31 -2.60 10.51 -18.95 -0.20 -2.80 16 3 C 0.16 1.54 6.73 -38.85 -0.26 1.28 16 4 C -0.24 -1.81 9.12 -39.19 -0.36 -2.17 16 5 C 0.13 1.23 11.17 -17.62 -0.20 1.04 16 6 N -0.45 -6.02 10.12 -9.88 -0.10 -6.12 16 7 C 0.14 1.93 6.74 -83.06 -0.56 1.37 16 8 C 0.52 8.75 7.95 34.77 0.28 9.03 16 9 O -0.50 -9.24 16.11 -19.21 -0.31 -9.55 16 10 O -0.32 -5.83 8.69 -40.45 -0.35 -6.18 16 11 C 0.08 1.45 4.33 37.16 0.16 1.61 16 12 C -0.06 -1.19 0.61 -154.51 -0.09 -1.28 16 13 C -0.13 -2.51 8.08 37.16 0.30 -2.21 16 14 C -0.13 -2.51 8.08 37.16 0.30 -2.20 16 15 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 16 C -0.51 -13.86 7.65 -34.44 -0.26 -14.13 16 17 H 0.06 1.62 5.68 -52.49 -0.30 1.33 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 20 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 C -0.14 -1.69 9.60 -38.87 -0.37 -2.07 16 25 H 0.06 0.17 7.71 -51.93 -0.40 -0.23 16 26 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.17 7.71 -51.93 -0.40 -0.23 16 28 H 0.15 0.59 6.45 -52.48 -0.34 0.25 16 29 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.04 0.78 7.68 -51.93 -0.40 0.38 16 33 H 0.06 1.36 6.62 -51.93 -0.34 1.01 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 1.35 6.62 -51.93 -0.34 1.01 16 37 H 0.04 0.78 7.68 -51.92 -0.40 0.38 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.16 1.85 7.64 -52.49 -0.40 1.45 16 LS Contribution 346.09 15.07 5.22 5.22 Total: -1.00 -32.68 346.09 -6.15 -38.83 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -5.84 Total: -3.46 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -0.29 Total: -6.43 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.64 Total: -32.19 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.86 Total: -18.53 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.68 -6.15 -38.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842786186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.392 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds