Wall clock time and date at job start Tue Mar 31 2020 07:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35748 * 116.99488 * 2 1 4 4 C 1.39203 * 120.81876 * 0.02562 * 3 2 1 5 5 C 1.38332 * 119.29700 * 179.97438 * 4 3 2 6 6 N 1.31596 * 120.97962 * 0.02562 * 5 4 3 7 7 C 1.32832 * 121.77339 * 359.69859 * 6 5 4 8 8 C 1.48081 * 119.70374 * 180.29595 * 7 6 5 9 9 O 1.21428 * 120.00644 * 180.28996 * 8 7 6 10 10 O 1.34685 * 119.99939 * 0.28845 * 8 7 6 11 11 C 1.45193 * 117.00078 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47186 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.46970 * 299.99748 * 12 11 10 14 14 C 1.53001 * 109.47378 * 59.99746 * 12 11 10 15 15 C 1.53001 * 109.47496 * 180.02562 * 12 11 10 16 16 C 1.50698 * 109.47358 * 180.02562 * 15 12 11 17 17 H 1.07997 * 120.00115 * 359.97438 * 16 15 12 18 18 C 1.37878 * 119.99895 * 179.97438 * 16 15 12 19 19 N 1.31511 * 119.99991 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99894 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47127 * 89.99678 * 20 18 16 22 22 H 1.48498 * 109.47141 * 209.99912 * 20 18 16 23 23 H 1.48501 * 109.46787 * 329.99855 * 20 18 16 24 24 C 1.39143 * 120.59894 * 0.58798 * 7 6 5 25 25 H 1.08999 * 109.47272 * 59.99790 * 1 2 3 26 26 H 1.08997 * 109.46873 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47168 * 299.99860 * 1 2 3 28 28 H 1.08004 * 120.35249 * 359.95564 * 4 3 2 29 29 H 1.08003 * 119.51333 * 179.97438 * 5 4 3 30 30 H 1.09001 * 109.47076 * 300.00101 * 11 10 8 31 31 H 1.09000 * 109.47332 * 59.99892 * 11 10 8 32 32 H 1.08999 * 109.47385 * 60.00049 * 13 12 11 33 33 H 1.08999 * 109.47468 * 179.97438 * 13 12 11 34 34 H 1.09000 * 109.47090 * 299.99975 * 13 12 11 35 35 H 1.09001 * 109.46847 * 60.00069 * 14 12 11 36 36 H 1.08999 * 109.47175 * 180.02562 * 14 12 11 37 37 H 1.09007 * 109.46757 * 300.00172 * 14 12 11 38 38 H 1.09001 * 109.46825 * 299.99991 * 15 12 11 39 39 H 1.09000 * 109.47273 * 59.99592 * 15 12 11 40 40 H 0.97006 * 119.99715 * 180.02562 * 19 18 16 41 41 H 1.08002 * 120.51524 * 179.70875 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 1.3037 2.3877 0.0005 5 6 1.9641 3.6032 0.0011 6 7 3.2789 3.6597 0.0006 7 6 4.0262 2.5616 0.0055 8 6 5.5024 2.6786 0.0113 9 8 6.1909 1.6784 0.0105 10 8 6.0815 3.8946 0.0175 11 6 7.5329 3.9335 0.0224 12 6 8.0040 5.3891 0.0297 13 6 7.4790 6.1013 -1.2185 14 6 7.4708 6.0916 1.2799 15 6 9.5335 5.4302 0.0342 16 6 9.9975 6.8639 0.0420 17 1 9.2740 7.6657 0.0432 18 6 11.3459 7.1521 0.0477 19 7 12.2269 6.1757 0.0468 20 14 11.9211 8.9293 0.0567 21 1 12.0687 9.3947 1.4591 22 1 13.2294 9.0297 -0.6386 23 1 10.9222 9.7763 -0.6434 24 6 3.4346 1.3022 -0.0009 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.2242 2.3531 0.0002 29 1 1.3923 4.5194 0.0011 30 1 7.9069 3.4264 0.9118 31 1 7.9128 3.4327 -0.8681 32 1 6.3894 6.0722 -1.2223 33 1 7.8143 7.1385 -1.2131 34 1 7.8589 5.6009 -2.1092 35 1 7.8448 5.5841 2.1692 36 1 7.8061 7.1287 1.2849 37 1 6.3811 6.0623 1.2762 38 1 9.9079 4.9226 0.9232 39 1 9.9130 4.9299 -0.8567 40 1 13.1755 6.3785 0.0511 41 1 4.0436 0.4102 -0.0016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842786186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:01 Heat of formation + Delta-G solvation = -118.220677 kcal Electronic energy + Delta-G solvation = -22925.377413 eV Core-core repulsion = 19383.950446 eV Total energy + Delta-G solvation = -3541.426967 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.09702 -41.17101 -39.33234 -38.67308 -36.95489 -34.40359 -32.83719 -32.65612 -29.35084 -28.65054 -28.01567 -27.95122 -25.90816 -24.67588 -24.51027 -22.22499 -20.09052 -19.70301 -18.75150 -18.33766 -17.60881 -17.57460 -17.24792 -16.84672 -16.76928 -16.47994 -15.66957 -15.45378 -15.25028 -14.84186 -14.72544 -14.64445 -14.07731 -13.94390 -13.84463 -13.38626 -12.97100 -12.73891 -12.65966 -12.55335 -12.38098 -12.30933 -12.24758 -12.02634 -11.91096 -11.86867 -11.37773 -11.06763 -10.90652 -10.74016 -10.51286 -10.47951 -10.03963 -8.14348 -6.21943 -0.68109 0.15505 1.25499 1.32619 1.43980 1.44378 1.55298 2.16511 2.45308 2.66725 3.02996 3.20085 3.52309 3.70269 3.84507 3.90627 3.92816 4.02080 4.22226 4.33615 4.40390 4.40712 4.49122 4.59281 4.62957 4.74886 4.77325 4.86621 5.03539 5.06577 5.14839 5.25179 5.31565 5.43498 5.45957 5.50083 5.55346 5.74976 5.88287 6.10531 6.28485 6.42027 6.81694 6.91398 7.45332 8.98329 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.044282 B = 0.002719 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.164668 B =10296.933788 C =10727.422761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.324 6.324 3 C 0.160 3.840 4 C -0.212 4.212 5 C 0.133 3.867 6 N -0.484 5.484 7 C 0.111 3.889 8 C 0.514 3.486 9 O -0.526 6.526 10 O -0.322 6.322 11 C 0.084 3.916 12 C -0.053 4.053 13 C -0.118 4.118 14 C -0.119 4.119 15 C 0.040 3.960 16 C -0.514 4.514 17 H 0.071 0.929 18 C -0.004 4.004 19 N -0.937 5.937 20 Si 0.961 3.039 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.261 1.261 24 C -0.150 4.150 25 H 0.077 0.923 26 H 0.122 0.878 27 H 0.077 0.923 28 H 0.190 0.810 29 H 0.206 0.794 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.057 0.943 37 H 0.062 0.938 38 H -0.009 1.009 39 H -0.009 1.009 40 H 0.261 0.739 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.500 -8.583 -0.101 30.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.236 6.236 3 C 0.106 3.894 4 C -0.232 4.232 5 C -0.026 4.026 6 N -0.199 5.199 7 C -0.023 4.023 8 C 0.358 3.642 9 O -0.416 6.416 10 O -0.237 6.237 11 C 0.010 3.990 12 C -0.053 4.053 13 C -0.176 4.176 14 C -0.176 4.176 15 C 0.003 3.997 16 C -0.552 4.552 17 H 0.089 0.911 18 C -0.201 4.201 19 N -0.578 5.578 20 Si 0.786 3.214 21 H -0.200 1.200 22 H -0.214 1.214 23 H -0.185 1.185 24 C -0.172 4.172 25 H 0.096 0.904 26 H 0.140 0.860 27 H 0.096 0.904 28 H 0.207 0.793 29 H 0.222 0.778 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.010 0.990 39 H 0.010 0.990 40 H 0.069 0.931 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -28.568 -8.324 -0.109 29.757 hybrid contribution 0.799 -0.400 0.015 0.894 sum -27.769 -8.724 -0.094 29.108 Atomic orbital electron populations 1.23586 0.74819 1.06471 1.03389 1.86102 1.24749 1.25262 1.87448 1.19127 0.91103 0.86347 0.92853 1.22926 1.03930 0.91534 1.04830 1.23384 0.88306 0.99454 0.91431 1.67709 1.09025 1.30610 1.12544 1.19543 0.89904 0.89992 1.02862 1.21255 0.88862 0.81678 0.72392 1.90824 1.64970 1.38833 1.46950 1.86642 1.24373 1.30416 1.82250 1.23295 0.74956 0.99223 1.01528 1.20615 0.96155 0.90833 0.97682 1.21632 0.99929 1.00545 0.95453 1.21635 0.99905 1.00606 0.95425 1.18990 0.89243 0.96640 0.94813 1.21523 0.91756 0.92856 1.49044 0.91056 1.25948 0.97343 1.01512 0.95331 1.70117 1.01657 1.33648 1.52418 0.85497 0.77612 0.79958 0.78301 1.20050 1.21354 1.18461 1.21321 0.93874 0.98215 1.03769 0.90443 0.86024 0.90437 0.79256 0.77781 0.92038 0.92033 0.91877 0.92403 0.94249 0.94248 0.92360 0.91873 0.99042 0.99025 0.93070 0.83429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.84 113.37 1.12 1.16 16 2 O -0.32 -4.72 10.51 -90.73 -0.95 -5.67 16 3 C 0.16 2.73 6.73 22.74 0.15 2.88 16 4 C -0.21 -2.36 9.12 22.52 0.21 -2.15 16 5 C 0.13 1.99 11.17 84.75 0.95 2.93 16 6 N -0.48 -12.16 10.12 -185.18 -1.87 -14.03 16 7 C 0.11 3.15 6.74 41.82 0.28 3.44 16 8 C 0.51 17.99 7.95 70.43 0.56 18.55 16 9 O -0.53 -20.47 16.11 20.07 0.32 -20.15 16 10 O -0.32 -11.86 8.69 -55.94 -0.49 -12.35 16 11 C 0.08 3.34 4.33 71.98 0.31 3.66 16 12 C -0.05 -2.24 0.61 -52.18 -0.03 -2.27 16 13 C -0.12 -4.66 8.08 71.98 0.58 -4.08 16 14 C -0.12 -4.66 8.08 71.98 0.58 -4.08 16 15 C 0.04 2.13 4.04 29.85 0.12 2.25 16 16 C -0.51 -28.44 7.65 25.60 0.20 -28.25 16 17 H 0.07 3.74 5.68 -2.91 -0.02 3.73 16 18 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 19 N -0.94 -57.56 13.29 21.45 0.28 -57.28 16 20 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 24 C -0.15 -3.58 9.60 22.73 0.22 -3.36 16 25 H 0.08 0.08 7.71 -2.39 -0.02 0.06 16 26 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 27 H 0.08 0.08 7.71 -2.39 -0.02 0.06 16 28 H 0.19 0.38 6.45 -2.91 -0.02 0.36 16 29 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 30 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.06 2.22 7.68 -2.39 -0.02 2.20 16 33 H 0.06 2.35 6.62 -2.39 -0.02 2.33 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 2.35 6.62 -2.39 -0.02 2.34 16 37 H 0.06 2.22 7.68 -2.38 -0.02 2.20 16 38 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 41 H 0.15 3.67 7.64 -2.91 -0.02 3.64 16 Total: -1.00 -73.26 346.09 6.05 -67.21 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: 1.03 Total: 4.94 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 5.70 Total: -9.12 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -1.59 Total: -71.30 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -1.12 Total: -38.17 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -73.26 6.05 -67.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842786186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.012 kcal (2) G-P(sol) polarization free energy of solvation -73.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds