Wall clock time and date at job start Tue Mar 31 2020 06:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34513 * 125.78630 * 2 1 4 4 C 1.41384 * 106.84008 * 179.97438 * 3 2 1 5 5 C 1.34510 * 106.83896 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.79177 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46837 * 0.02562 * 6 5 4 8 8 C 1.52995 * 109.47156 * 120.00170 * 6 5 4 9 9 C 1.50698 * 109.47663 * 240.00783 * 6 5 4 10 10 O 1.21276 * 119.99667 * 274.56213 * 9 6 5 11 11 N 1.34776 * 120.00173 * 94.55397 * 9 6 5 12 12 C 1.47020 * 125.64976 * 4.68290 * 11 9 6 13 13 C 1.54325 * 107.27263 * 178.98316 * 12 11 9 14 14 C 1.55157 * 102.93982 * 337.80885 * 13 12 11 15 15 O 1.42907 * 111.00233 * 277.42599 * 14 13 12 16 16 C 1.50698 * 111.00323 * 153.61397 * 14 13 12 17 17 H 1.08002 * 120.00062 * 1.43932 * 16 14 13 18 18 C 1.37872 * 120.00309 * 181.43270 * 16 14 13 19 19 N 1.31519 * 120.00490 * 186.78942 * 18 16 14 20 20 Si 1.86801 * 119.99842 * 6.79413 * 18 16 14 21 21 H 1.48496 * 109.47403 * 94.00421 * 20 18 16 22 22 H 1.48502 * 109.47219 * 214.00702 * 20 18 16 23 23 H 1.48500 * 109.47026 * 334.00888 * 20 18 16 24 24 C 1.47426 * 125.64876 * 184.73411 * 11 9 6 25 25 O 1.34305 * 125.78983 * 180.27556 * 2 1 3 26 26 H 1.08994 * 109.47249 * 89.99634 * 1 2 3 27 27 H 1.09003 * 109.47018 * 209.99891 * 1 2 3 28 28 H 1.08998 * 109.47045 * 329.99130 * 1 2 3 29 29 H 1.08006 * 126.58105 * 359.95588 * 3 2 1 30 30 H 1.08001 * 126.57824 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47392 * 55.02293 * 8 6 5 32 32 H 1.09004 * 109.47511 * 175.02320 * 8 6 5 33 33 H 1.09003 * 109.47291 * 295.02253 * 8 6 5 34 34 H 1.09006 * 109.87876 * 59.56469 * 12 11 9 35 35 H 1.08998 * 109.88048 * 298.40620 * 12 11 9 36 36 H 1.08997 * 110.71757 * 219.44560 * 13 12 11 37 37 H 1.08997 * 110.86903 * 96.23898 * 13 12 11 38 38 H 0.96701 * 113.99698 * 298.54475 * 15 14 13 39 39 H 0.97000 * 120.00103 * 179.97438 * 19 18 16 40 40 H 1.09000 * 110.36608 * 85.24484 * 24 11 9 41 41 H 1.09001 * 110.36284 * 322.92722 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 0.0006 5 6 3.5814 -0.7121 0.0004 6 6 4.7706 -1.6378 0.0003 7 1 5.6886 -1.0500 0.0009 8 6 4.7299 -2.5204 1.2493 9 6 4.7309 -2.5066 -1.2304 10 8 4.0872 -3.5344 -1.2264 11 7 5.4106 -2.1414 -2.3354 12 6 6.3038 -0.9790 -2.4469 13 6 6.8748 -0.9757 -3.8806 14 6 6.7128 -2.4541 -4.3225 15 8 7.7922 -3.2550 -3.8370 16 6 6.5968 -2.5603 -5.8213 17 1 6.6555 -1.6713 -6.4317 18 6 6.4159 -3.7923 -6.4132 19 7 6.4482 -3.9036 -7.7233 20 14 6.1246 -5.3034 -5.3544 21 1 4.6646 -5.5312 -5.2077 22 1 6.7480 -6.4871 -5.9990 23 1 6.7298 -5.0933 -4.0147 24 6 5.3807 -2.8407 -3.6329 25 8 2.2925 -1.0894 -0.0052 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5140 29 1 1.9665 2.1205 -0.0007 30 1 4.5212 1.2435 0.0012 31 1 3.7737 -3.0417 1.2949 32 1 5.5393 -3.2492 1.2058 33 1 4.8477 -1.8992 2.1372 34 1 7.1158 -1.0649 -1.7246 35 1 5.7425 -0.0617 -2.2692 36 1 7.9260 -0.6874 -3.8764 37 1 6.2976 -0.3146 -4.5269 38 1 8.6607 -2.9860 -4.1665 39 1 6.3212 -4.7704 -8.1396 40 1 4.5330 -2.5007 -4.2277 41 1 5.3308 -3.9190 -3.4815 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844016269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:17 Heat of formation + Delta-G solvation = -62.704032 kcal Electronic energy + Delta-G solvation = -24379.959246 eV Core-core repulsion = 20840.939662 eV Total energy + Delta-G solvation = -3539.019585 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.68021 -39.74988 -37.65367 -34.58130 -34.11867 -33.20739 -32.42895 -31.16543 -30.21951 -28.64299 -26.60692 -25.48942 -23.55842 -22.45158 -21.84280 -20.42992 -19.81436 -18.92051 -17.44545 -17.18891 -16.50391 -16.21400 -15.48554 -15.15897 -14.74118 -14.43629 -14.36921 -13.89890 -13.55742 -13.28139 -13.14730 -13.02735 -12.84407 -12.76421 -12.59246 -12.29805 -12.10037 -12.04014 -11.82841 -11.55287 -11.47365 -11.36882 -10.86572 -10.67792 -10.34172 -10.10886 -9.95072 -9.56874 -9.01987 -8.72577 -8.48368 -8.29711 -8.11789 -6.24967 -4.37568 1.62102 2.49535 2.69590 3.07339 3.31306 3.39142 3.48982 3.66920 4.43206 4.49156 4.64918 4.74524 4.93370 4.94786 5.06053 5.10416 5.14965 5.24427 5.26925 5.28632 5.49564 5.52220 5.63019 5.67360 5.68603 5.80270 5.88038 5.95914 6.06639 6.09258 6.16882 6.44429 6.46436 6.52512 6.64929 6.65240 7.02639 7.14299 7.45572 7.94412 8.15812 8.47729 8.70049 8.88562 9.39125 10.84860 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021260 B = 0.004564 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.714165 B = 6133.584086 C = 6161.227376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.014 4.014 3 C -0.213 4.213 4 C -0.200 4.200 5 C 0.003 3.997 6 C -0.025 4.025 7 H 0.115 0.885 8 C -0.134 4.134 9 C 0.527 3.473 10 O -0.538 6.538 11 N -0.607 5.607 12 C 0.102 3.898 13 C -0.146 4.146 14 C 0.217 3.783 15 O -0.568 6.568 16 C -0.552 4.552 17 H 0.081 0.919 18 C 0.092 3.908 19 N -0.884 5.884 20 Si 0.862 3.138 21 H -0.284 1.284 22 H -0.294 1.294 23 H -0.222 1.222 24 C 0.109 3.891 25 O -0.162 6.162 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.363 0.637 39 H 0.268 0.732 40 H 0.080 0.920 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 10.620 16.698 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.065 4.065 3 C -0.232 4.232 4 C -0.219 4.219 5 C -0.048 4.048 6 C -0.047 4.047 7 H 0.133 0.867 8 C -0.192 4.192 9 C 0.314 3.686 10 O -0.415 6.415 11 N -0.339 5.339 12 C -0.021 4.021 13 C -0.184 4.184 14 C 0.176 3.824 15 O -0.375 6.375 16 C -0.590 4.590 17 H 0.099 0.901 18 C -0.114 4.114 19 N -0.519 5.519 20 Si 0.690 3.310 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.145 1.145 24 C -0.012 4.012 25 O -0.058 6.058 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.165 0.835 30 H 0.167 0.833 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.210 0.790 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.598 9.330 16.916 20.113 hybrid contribution 0.347 -0.177 -0.103 0.403 sum -5.251 9.152 16.813 19.850 Atomic orbital electron populations 1.20300 0.85206 1.03851 1.03637 1.22497 0.94120 0.84255 1.05589 1.21511 0.92550 0.99277 1.09900 1.21535 0.98398 0.93291 1.08665 1.21693 0.82758 0.93554 1.06782 1.19865 0.93652 0.95569 0.95580 0.86658 1.21669 1.04104 0.99075 0.94342 1.19911 0.79481 0.85942 0.83275 1.90687 1.42729 1.25216 1.82917 1.48673 1.44863 1.28694 1.11711 1.22064 0.92670 0.87911 0.99436 1.23195 1.00965 1.00715 0.93499 1.20081 0.84010 0.85335 0.92929 1.86563 1.17441 1.59199 1.74266 1.21181 1.53731 0.95525 0.88540 0.90105 1.24950 0.92426 0.99264 0.94739 1.69931 1.47085 1.25431 1.09498 0.87237 0.78553 0.81654 0.83584 1.21067 1.22062 1.14473 1.23000 0.99129 0.97784 0.81316 1.84029 1.16038 1.34807 1.70942 0.90025 0.90565 0.89427 0.83471 0.83298 0.90998 0.91259 0.91524 0.91886 0.92165 0.90652 0.90130 0.78997 0.92280 0.90161 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.42 36.01 0.38 -0.26 16 2 C -0.01 -0.18 7.32 -35.62 -0.26 -0.44 16 3 C -0.21 -2.51 10.81 -39.70 -0.43 -2.94 16 4 C -0.20 -2.48 10.78 -39.70 -0.43 -2.91 16 5 C 0.00 0.04 5.81 -35.63 -0.21 -0.16 16 6 C -0.03 -0.36 2.83 -92.93 -0.26 -0.63 16 7 H 0.12 1.32 6.91 -51.93 -0.36 0.97 16 8 C -0.13 -1.72 8.75 37.16 0.32 -1.39 16 9 C 0.53 10.18 6.83 -10.99 -0.08 10.10 16 10 O -0.54 -12.46 16.60 5.56 0.09 -12.37 16 11 N -0.61 -11.84 3.33 -170.52 -0.57 -12.41 16 12 C 0.10 1.59 6.00 -3.06 -0.02 1.57 16 13 C -0.15 -2.54 6.13 -24.90 -0.15 -2.69 16 14 C 0.22 4.80 0.69 -89.63 -0.06 4.74 16 15 O -0.57 -12.36 10.31 -35.23 -0.36 -12.72 16 16 C -0.55 -14.58 8.85 -34.44 -0.30 -14.88 16 17 H 0.08 2.27 8.01 -52.49 -0.42 1.85 16 18 C 0.09 2.59 5.46 -17.82 -0.10 2.49 16 19 N -0.88 -26.23 13.96 55.43 0.77 -25.46 16 20 Si 0.86 22.18 24.47 -169.99 -4.16 18.02 16 21 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 22 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 23 H -0.22 -5.68 4.89 56.52 0.28 -5.40 16 24 C 0.11 2.50 4.96 -2.53 -0.01 2.48 16 25 O -0.16 -2.58 10.65 5.70 0.06 -2.52 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 30 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.07 1.03 8.02 -51.93 -0.42 0.62 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.85 7.91 -51.93 -0.41 0.44 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.08 1.42 8.02 -51.93 -0.42 1.00 16 38 H 0.36 6.63 9.11 45.56 0.41 7.05 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.08 1.89 8.03 -51.93 -0.42 1.47 16 41 H 0.07 1.87 4.69 -51.93 -0.24 1.63 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -34.38 336.15 -6.04 -40.42 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -5.33 Total: 6.89 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -1.61 Total: -4.91 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.21 Total: -37.87 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.21 Total: -27.61 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.16 Total: 18.02 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.38 -6.04 -40.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.288 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds