Wall clock time and date at job start Tue Mar 31 2020 06:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34513 * 125.78630 * 2 1 4 4 C 1.41384 * 106.84008 * 179.97438 * 3 2 1 5 5 C 1.34510 * 106.83896 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.79177 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.46837 * 0.02562 * 6 5 4 8 8 C 1.52995 * 109.47156 * 120.00170 * 6 5 4 9 9 C 1.50698 * 109.47663 * 240.00783 * 6 5 4 10 10 O 1.21276 * 119.99667 * 274.56213 * 9 6 5 11 11 N 1.34776 * 120.00173 * 94.55397 * 9 6 5 12 12 C 1.47020 * 125.64976 * 4.68290 * 11 9 6 13 13 C 1.54325 * 107.27263 * 178.98316 * 12 11 9 14 14 C 1.55157 * 102.93982 * 337.80885 * 13 12 11 15 15 O 1.42907 * 111.00233 * 277.42599 * 14 13 12 16 16 C 1.50698 * 111.00323 * 153.61397 * 14 13 12 17 17 H 1.08002 * 120.00062 * 1.43932 * 16 14 13 18 18 C 1.37872 * 120.00309 * 181.43270 * 16 14 13 19 19 N 1.31519 * 120.00490 * 186.78942 * 18 16 14 20 20 Si 1.86801 * 119.99842 * 6.79413 * 18 16 14 21 21 H 1.48496 * 109.47403 * 94.00421 * 20 18 16 22 22 H 1.48502 * 109.47219 * 214.00702 * 20 18 16 23 23 H 1.48500 * 109.47026 * 334.00888 * 20 18 16 24 24 C 1.47426 * 125.64876 * 184.73411 * 11 9 6 25 25 O 1.34305 * 125.78983 * 180.27556 * 2 1 3 26 26 H 1.08994 * 109.47249 * 89.99634 * 1 2 3 27 27 H 1.09003 * 109.47018 * 209.99891 * 1 2 3 28 28 H 1.08998 * 109.47045 * 329.99130 * 1 2 3 29 29 H 1.08006 * 126.58105 * 359.95588 * 3 2 1 30 30 H 1.08001 * 126.57824 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47392 * 55.02293 * 8 6 5 32 32 H 1.09004 * 109.47511 * 175.02320 * 8 6 5 33 33 H 1.09003 * 109.47291 * 295.02253 * 8 6 5 34 34 H 1.09006 * 109.87876 * 59.56469 * 12 11 9 35 35 H 1.08998 * 109.88048 * 298.40620 * 12 11 9 36 36 H 1.08997 * 110.71757 * 219.44560 * 13 12 11 37 37 H 1.08997 * 110.86903 * 96.23898 * 13 12 11 38 38 H 0.96701 * 113.99698 * 298.54475 * 15 14 13 39 39 H 0.97000 * 120.00103 * 179.97438 * 19 18 16 40 40 H 1.09000 * 110.36608 * 85.24484 * 24 11 9 41 41 H 1.09001 * 110.36284 * 322.92722 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6309 0.6321 0.0006 5 6 3.5814 -0.7121 0.0004 6 6 4.7706 -1.6378 0.0003 7 1 5.6886 -1.0500 0.0009 8 6 4.7299 -2.5204 1.2493 9 6 4.7309 -2.5066 -1.2304 10 8 4.0872 -3.5344 -1.2264 11 7 5.4106 -2.1414 -2.3354 12 6 6.3038 -0.9790 -2.4469 13 6 6.8748 -0.9757 -3.8806 14 6 6.7128 -2.4541 -4.3225 15 8 7.7922 -3.2550 -3.8370 16 6 6.5968 -2.5603 -5.8213 17 1 6.6555 -1.6713 -6.4317 18 6 6.4159 -3.7923 -6.4132 19 7 6.4482 -3.9036 -7.7233 20 14 6.1246 -5.3034 -5.3544 21 1 4.6646 -5.5312 -5.2077 22 1 6.7480 -6.4871 -5.9990 23 1 6.7298 -5.0933 -4.0147 24 6 5.3807 -2.8407 -3.6329 25 8 2.2925 -1.0894 -0.0052 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5140 29 1 1.9665 2.1205 -0.0007 30 1 4.5212 1.2435 0.0012 31 1 3.7737 -3.0417 1.2949 32 1 5.5393 -3.2492 1.2058 33 1 4.8477 -1.8992 2.1372 34 1 7.1158 -1.0649 -1.7246 35 1 5.7425 -0.0617 -2.2692 36 1 7.9260 -0.6874 -3.8764 37 1 6.2976 -0.3146 -4.5269 38 1 8.6607 -2.9860 -4.1665 39 1 6.3212 -4.7704 -8.1396 40 1 4.5330 -2.5007 -4.2277 41 1 5.3308 -3.9190 -3.4815 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844016269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:17 Heat of formation + Delta-G solvation = -88.560098 kcal Electronic energy + Delta-G solvation = -24381.080450 eV Core-core repulsion = 20840.939662 eV Total energy + Delta-G solvation = -3540.140788 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.64332 -41.24946 -39.26125 -36.22296 -35.26385 -34.54679 -34.12407 -32.08674 -31.71428 -30.27513 -27.63773 -27.13133 -24.99485 -23.73760 -22.78667 -21.62007 -21.40289 -20.23685 -19.36110 -18.60101 -17.65186 -17.37218 -17.09493 -16.54973 -16.28559 -16.17282 -15.67010 -15.27170 -14.93240 -14.56507 -14.49671 -14.09884 -13.98372 -13.94986 -13.72896 -13.71381 -13.53787 -13.25367 -13.13944 -12.95167 -12.72266 -12.55565 -12.54247 -12.38341 -12.16951 -11.88452 -11.13057 -11.03528 -10.85299 -10.76949 -10.26459 -9.66942 -9.25432 -8.45339 -6.56005 0.63812 1.25661 1.33590 1.39358 1.57032 1.65764 1.96400 2.02315 2.28674 2.92373 3.33563 3.53361 3.58630 3.78571 3.83063 4.04587 4.09181 4.19624 4.22828 4.26933 4.40761 4.54125 4.59448 4.66392 4.69030 4.75634 4.77243 4.82984 4.89871 4.97242 5.03822 5.08898 5.18255 5.21757 5.25165 5.36227 5.51078 5.64818 6.04199 6.21615 6.49143 6.58012 7.01168 7.14462 7.32232 8.68599 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021260 B = 0.004564 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.714165 B = 6133.584086 C = 6161.227376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.032 4.032 3 C -0.218 4.218 4 C -0.185 4.185 5 C -0.033 4.033 6 C -0.013 4.013 7 H 0.153 0.847 8 C -0.131 4.131 9 C 0.518 3.482 10 O -0.591 6.591 11 N -0.610 5.610 12 C 0.101 3.899 13 C -0.137 4.137 14 C 0.214 3.786 15 O -0.575 6.575 16 C -0.541 4.541 17 H 0.059 0.941 18 C 0.051 3.949 19 N -0.926 5.926 20 Si 0.912 3.088 21 H -0.301 1.301 22 H -0.294 1.294 23 H -0.219 1.219 24 C 0.108 3.892 25 O -0.200 6.200 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.176 0.824 30 H 0.181 0.819 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.380 0.620 39 H 0.268 0.732 40 H 0.061 0.939 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.649 13.521 19.170 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 C -0.236 4.236 4 C -0.203 4.203 5 C -0.083 4.083 6 C -0.034 4.034 7 H 0.171 0.829 8 C -0.189 4.189 9 C 0.307 3.693 10 O -0.472 6.472 11 N -0.342 5.342 12 C -0.020 4.020 13 C -0.175 4.175 14 C 0.173 3.827 15 O -0.383 6.383 16 C -0.579 4.579 17 H 0.077 0.923 18 C -0.151 4.151 19 N -0.565 5.565 20 Si 0.740 3.260 21 H -0.229 1.229 22 H -0.221 1.221 23 H -0.142 1.142 24 C -0.015 4.015 25 O -0.098 6.098 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.135 0.865 29 H 0.193 0.807 30 H 0.198 0.802 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.095 0.905 38 H 0.229 0.771 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.602 12.270 19.407 23.417 hybrid contribution -0.011 -1.000 -0.881 1.332 sum -4.613 11.271 18.526 22.170 Atomic orbital electron populations 1.20486 0.83101 1.05262 1.04236 1.23321 0.95656 0.84052 1.05127 1.21939 0.92283 1.00308 1.09105 1.21966 0.99765 0.92484 1.06120 1.21870 0.82392 0.94459 1.09552 1.19915 0.95487 0.95188 0.92773 0.82936 1.21678 1.02587 0.99359 0.95264 1.20966 0.78083 0.85826 0.84401 1.90654 1.44744 1.27793 1.83999 1.48776 1.45577 1.29391 1.10438 1.22343 0.93315 0.87521 0.98782 1.23126 1.03145 0.96622 0.94584 1.19921 0.83876 0.88789 0.90110 1.86502 1.18235 1.59677 1.73919 1.21526 1.51191 0.94100 0.91099 0.92301 1.25487 0.93043 1.01381 0.95162 1.70014 1.49813 1.25912 1.10720 0.86492 0.77208 0.79769 0.82546 1.22874 1.22083 1.14189 1.22654 0.99045 0.96299 0.83549 1.84010 1.17184 1.36708 1.71856 0.89723 0.90701 0.86484 0.80657 0.80183 0.93687 0.91333 0.88171 0.88481 0.88994 0.87636 0.90518 0.77115 0.92285 0.92073 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 10.42 71.24 0.74 -0.43 16 2 C -0.03 -0.76 7.32 24.83 0.18 -0.57 16 3 C -0.22 -4.39 10.81 22.19 0.24 -4.15 16 4 C -0.18 -3.84 10.78 22.19 0.24 -3.60 16 5 C -0.03 -0.89 5.81 24.83 0.14 -0.74 16 6 C -0.01 -0.34 2.83 -12.29 -0.03 -0.37 16 7 H 0.15 2.73 6.91 -2.39 -0.02 2.71 16 8 C -0.13 -3.14 8.75 71.98 0.63 -2.51 16 9 C 0.52 19.59 6.83 87.66 0.60 20.19 16 10 O -0.59 -28.20 16.60 -3.02 -0.05 -28.25 16 11 N -0.61 -22.81 3.33 -811.81 -2.70 -25.51 16 12 C 0.10 2.72 6.00 86.73 0.52 3.24 16 13 C -0.14 -4.32 6.13 31.78 0.19 -4.13 16 14 C 0.21 9.21 0.69 -10.15 -0.01 9.21 16 15 O -0.57 -23.90 10.31 -148.98 -1.54 -25.44 16 16 C -0.54 -28.70 8.85 25.60 0.23 -28.47 16 17 H 0.06 3.34 8.01 -2.91 -0.02 3.32 16 18 C 0.05 2.91 5.46 84.65 0.46 3.37 16 19 N -0.93 -56.29 13.96 21.45 0.30 -55.99 16 20 Si 0.91 47.41 24.47 68.60 1.68 49.08 16 21 H -0.30 -16.28 7.11 99.48 0.71 -15.57 16 22 H -0.29 -15.07 7.11 99.48 0.71 -14.36 16 23 H -0.22 -11.19 4.89 99.48 0.49 -10.71 16 24 C 0.11 4.95 4.96 86.85 0.43 5.38 16 25 O -0.20 -6.27 10.65 -2.52 -0.03 -6.29 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 30 H 0.18 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.04 1.30 8.02 -2.39 -0.02 1.28 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.10 2.02 7.91 -2.38 -0.02 2.00 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 36 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.08 2.49 8.02 -2.39 -0.02 2.47 16 38 H 0.38 12.89 9.11 -74.06 -0.67 12.21 16 39 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.06 2.97 8.03 -2.39 -0.02 2.95 16 41 H 0.04 2.20 4.69 -2.39 -0.01 2.19 16 Total: -1.00 -78.94 336.15 2.38 -76.56 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.14 Total: 19.43 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 4.57 Total: -3.60 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -2.40 Total: -81.49 kcal Atomic # 8 Polarization: -58.37 SS G_CDS: -1.61 Total: -59.98 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.68 Total: 49.08 kcal Total: -78.94 2.38 -76.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.999 kcal (2) G-P(sol) polarization free energy of solvation -78.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds