Wall clock time and date at job start Tue Mar 31 2020 06:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34519 * 125.78985 * 2 1 4 4 C 1.41381 * 106.84289 * 179.77177 * 3 2 1 5 5 C 1.34515 * 106.84057 * 0.22811 * 4 3 2 6 6 C 1.50694 * 125.79058 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.46889 * 359.97438 * 6 5 4 8 8 C 1.52998 * 109.47466 * 240.00027 * 6 5 4 9 9 C 1.50700 * 109.47239 * 119.99734 * 6 5 4 10 10 O 1.21277 * 120.00175 * 17.89593 * 9 6 5 11 11 N 1.34778 * 120.00096 * 197.89729 * 9 6 5 12 12 C 1.47021 * 125.64839 * 185.53193 * 11 9 6 13 13 C 1.54327 * 107.27119 * 181.01963 * 12 11 9 14 14 C 1.55150 * 102.94079 * 22.19635 * 13 12 11 15 15 O 1.42905 * 111.00854 * 82.56929 * 14 13 12 16 16 C 1.50699 * 111.00409 * 206.38549 * 14 13 12 17 17 H 1.07997 * 120.00010 * 24.70672 * 16 14 13 18 18 C 1.37880 * 120.00009 * 204.71527 * 16 14 13 19 19 N 1.31515 * 120.00134 * 169.87681 * 18 16 14 20 20 Si 1.86800 * 119.99968 * 349.86619 * 18 16 14 21 21 H 1.48507 * 109.46772 * 89.03039 * 20 18 16 22 22 H 1.48500 * 109.47378 * 209.02800 * 20 18 16 23 23 H 1.48494 * 109.47498 * 329.03123 * 20 18 16 24 24 C 1.47419 * 125.64786 * 5.22402 * 11 9 6 25 25 O 1.34303 * 125.79124 * 180.16166 * 2 1 3 26 26 H 1.09007 * 109.47487 * 90.00012 * 1 2 3 27 27 H 1.08998 * 109.47174 * 209.99964 * 1 2 3 28 28 H 1.09000 * 109.47458 * 330.00134 * 1 2 3 29 29 H 1.08004 * 126.57614 * 0.03440 * 3 2 1 30 30 H 1.08001 * 126.57811 * 180.19182 * 4 3 2 31 31 H 1.08994 * 109.47779 * 185.50141 * 8 6 5 32 32 H 1.09007 * 109.46839 * 305.50122 * 8 6 5 33 33 H 1.08996 * 109.47210 * 65.49732 * 8 6 5 34 34 H 1.08998 * 109.88645 * 300.43796 * 12 11 9 35 35 H 1.09001 * 109.88223 * 61.44960 * 12 11 9 36 36 H 1.09005 * 110.71469 * 140.55826 * 13 12 11 37 37 H 1.08995 * 110.71816 * 263.83162 * 13 12 11 38 38 H 0.96701 * 113.99582 * 55.95393 * 15 14 13 39 39 H 0.97001 * 119.99957 * 179.97438 * 19 18 16 40 40 H 1.09000 * 110.36687 * 274.74657 * 24 11 9 41 41 H 1.09002 * 110.36752 * 37.07048 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 0.0054 5 6 3.5814 -0.7121 0.0032 6 6 4.7705 -1.6377 0.0067 7 1 5.6884 -1.0499 0.0109 8 6 4.7351 -2.5184 -1.2439 9 6 4.7256 -2.5086 1.2358 10 8 3.6895 -2.6325 1.8537 11 7 5.8370 -3.1499 1.6483 12 6 5.9084 -4.1151 2.7550 13 6 7.3796 -4.5653 2.8762 14 6 8.1551 -3.4041 2.1998 15 8 8.3551 -2.3221 3.1117 16 6 9.4691 -3.8856 1.6409 17 1 9.5950 -4.9250 1.3762 18 6 10.5108 -2.9990 1.4676 19 7 11.7119 -3.4455 1.1715 20 14 10.2161 -1.1638 1.6531 21 1 10.4180 -0.7709 3.0709 22 1 11.1705 -0.4196 0.7925 23 1 8.8255 -0.8418 1.2434 24 6 7.1811 -3.0045 1.0604 25 8 2.2924 -1.0894 -0.0031 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.9664 2.1205 0.0005 30 1 4.5211 1.2435 0.0097 31 1 5.5386 -3.2531 -1.1938 32 1 3.7755 -3.0325 -1.2992 33 1 4.8658 -1.8969 -2.1297 34 1 5.5885 -3.6401 3.6825 35 1 5.2721 -4.9736 2.5398 36 1 7.6678 -4.6635 3.9228 37 1 7.5419 -5.5008 2.3409 38 1 8.8051 -2.5749 3.9293 39 1 12.4447 -2.8217 1.0492 40 1 7.2965 -3.6733 0.2076 41 1 7.3537 -1.9712 0.7594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844016270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:19 Heat of formation + Delta-G solvation = -70.124712 kcal Electronic energy + Delta-G solvation = -24284.497347 eV Core-core repulsion = 20745.155978 eV Total energy + Delta-G solvation = -3539.341369 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.52068 -39.76433 -37.70046 -34.69041 -34.19246 -33.06287 -32.45274 -31.28858 -30.12660 -28.54275 -26.50506 -25.19400 -24.18492 -22.21736 -21.66952 -20.24842 -19.92721 -18.86431 -17.58505 -16.94962 -16.49698 -15.99999 -15.38059 -15.33738 -14.90998 -14.56992 -14.29947 -13.75906 -13.65041 -13.21496 -13.14722 -13.07035 -12.76141 -12.69394 -12.61187 -12.31803 -12.13119 -12.03330 -11.88563 -11.56701 -11.43296 -11.34167 -10.84730 -10.63911 -10.38096 -10.28517 -9.80302 -9.56910 -9.31469 -8.72839 -8.56870 -8.20097 -8.15096 -6.29323 -4.41155 1.78010 2.64025 2.84853 3.03972 3.36038 3.40598 3.46930 3.58883 4.39989 4.51385 4.73810 4.86089 4.89088 5.03387 5.04765 5.10373 5.16920 5.31961 5.34545 5.38549 5.57217 5.60344 5.66788 5.73359 5.74765 5.88749 5.98293 6.01836 6.05180 6.10675 6.22155 6.31906 6.46030 6.58460 6.60258 6.70595 6.89252 7.30074 7.36241 7.92344 8.04777 8.47202 8.54977 8.74308 9.33041 10.79338 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.023523 B = 0.004484 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.056839 B = 6242.855038 C = 6774.156771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.019 4.019 3 C -0.214 4.214 4 C -0.209 4.209 5 C 0.018 3.982 6 C -0.029 4.029 7 H 0.121 0.879 8 C -0.141 4.141 9 C 0.529 3.471 10 O -0.545 6.545 11 N -0.609 5.609 12 C 0.113 3.887 13 C -0.149 4.149 14 C 0.221 3.779 15 O -0.561 6.561 16 C -0.554 4.554 17 H 0.082 0.918 18 C 0.077 3.923 19 N -0.883 5.883 20 Si 0.943 3.057 21 H -0.289 1.289 22 H -0.322 1.322 23 H -0.271 1.271 24 C 0.100 3.900 25 O -0.153 6.153 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.373 0.627 39 H 0.268 0.732 40 H 0.084 0.916 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.237 4.926 -2.984 16.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.070 4.070 3 C -0.233 4.233 4 C -0.228 4.228 5 C -0.033 4.033 6 C -0.050 4.050 7 H 0.139 0.861 8 C -0.199 4.199 9 C 0.317 3.683 10 O -0.423 6.423 11 N -0.342 5.342 12 C -0.009 4.009 13 C -0.187 4.187 14 C 0.180 3.820 15 O -0.369 6.369 16 C -0.592 4.592 17 H 0.100 0.900 18 C -0.129 4.129 19 N -0.517 5.517 20 Si 0.778 3.222 21 H -0.217 1.217 22 H -0.253 1.253 23 H -0.197 1.197 24 C -0.022 4.022 25 O -0.049 6.049 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.163 0.837 30 H 0.165 0.835 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.221 0.779 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.071 4.924 -3.188 17.108 hybrid contribution 0.530 0.862 0.547 1.151 sum -15.541 5.786 -2.641 16.792 Atomic orbital electron populations 1.20255 0.85414 1.03922 1.03152 1.22416 0.94017 0.84426 1.06094 1.21471 0.92590 0.99161 1.10107 1.21535 0.98365 0.93539 1.09334 1.21598 0.82761 0.93413 1.05563 1.19894 0.94117 0.95414 0.95597 0.86091 1.21752 1.03532 0.99606 0.94997 1.19923 0.82690 0.80290 0.85436 1.90682 1.30559 1.64002 1.57014 1.48631 1.08941 1.42812 1.33834 1.21894 0.98078 0.91252 0.89712 1.23297 0.92689 1.00893 1.01815 1.20207 0.93325 0.82446 0.86001 1.86100 1.80733 1.37901 1.32132 1.21148 0.94151 0.97732 1.46123 0.89959 1.25133 0.94381 1.00622 0.92729 1.69977 1.00354 1.36021 1.45387 0.85800 0.76553 0.82875 0.76963 1.21675 1.25310 1.19711 1.23205 0.79116 1.02104 0.97731 1.84002 1.15935 1.34465 1.70496 0.90366 0.90581 0.89600 0.83716 0.83510 0.90605 0.91605 0.90907 0.92135 0.92428 0.90672 0.90165 0.77884 0.92294 0.89807 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.42 36.00 0.37 -0.27 16 2 C -0.02 -0.26 7.32 -35.63 -0.26 -0.52 16 3 C -0.21 -2.84 10.81 -39.70 -0.43 -3.27 16 4 C -0.21 -3.06 10.78 -39.70 -0.43 -3.49 16 5 C 0.02 0.29 5.38 -35.63 -0.19 0.10 16 6 C -0.03 -0.46 2.55 -92.93 -0.24 -0.69 16 7 H 0.12 1.78 6.92 -51.93 -0.36 1.43 16 8 C -0.14 -1.86 9.16 37.16 0.34 -1.52 16 9 C 0.53 9.98 7.01 -10.98 -0.08 9.90 16 10 O -0.54 -11.87 16.07 -6.79 -0.11 -11.98 16 11 N -0.61 -11.29 3.32 -170.38 -0.57 -11.86 16 12 C 0.11 1.97 6.87 -3.06 -0.02 1.95 16 13 C -0.15 -2.61 6.11 -24.90 -0.15 -2.76 16 14 C 0.22 4.56 0.70 -89.51 -0.06 4.50 16 15 O -0.56 -11.64 8.78 -35.23 -0.31 -11.94 16 16 C -0.55 -13.73 8.86 -34.44 -0.31 -14.04 16 17 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 18 C 0.08 2.03 5.45 -17.82 -0.10 1.93 16 19 N -0.88 -24.98 13.96 55.43 0.77 -24.20 16 20 Si 0.94 22.20 24.98 -169.99 -4.25 17.95 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.32 -7.80 7.11 56.52 0.40 -7.39 16 23 H -0.27 -6.19 5.30 56.52 0.30 -5.89 16 24 C 0.10 1.92 5.21 -2.41 -0.01 1.91 16 25 O -0.15 -2.57 10.09 -6.66 -0.07 -2.64 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16 30 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.08 0.97 7.39 -51.93 -0.38 0.58 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 37 H 0.08 1.39 7.98 -51.93 -0.41 0.98 16 38 H 0.37 6.70 9.06 45.56 0.41 7.11 16 39 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.08 1.53 7.67 -51.93 -0.40 1.13 16 41 H 0.08 1.48 5.24 -51.93 -0.27 1.21 16 LS Contribution 335.15 15.07 5.05 5.05 Total: -1.00 -32.23 335.15 -6.33 -38.57 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.30 Total: 7.32 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.56 Total: -6.27 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.21 Total: -36.06 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.49 Total: -26.56 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.25 Total: 17.95 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.23 -6.33 -38.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.558 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds